Package: VCFArray
Title: Representing on-disk / remote VCF files as array-like objects
Version: 1.25.0
Authors@R: c(
    person("Qian", "Liu", email = "qliu7@buffalo.edu", role = c("aut", "cre")),	
    person("Martin", "Morgan", role = "aut"))	       
Description: VCFArray extends the DelayedArray to represent VCF data entries
    as array-like objects with on-disk / remote VCF file as backend. Data
    entries from VCF files, including info fields, FORMAT fields, and the
    fixed columns (REF, ALT, QUAL, FILTER) could be converted into VCFArray
    instances with different dimensions. 
biocViews: Infrastructure, DataRepresentation, Sequencing,
        VariantAnnotation
Depends: R (>= 3.6), methods, BiocGenerics, DelayedArray (>= 0.7.28)
License: GPL-3
Encoding: UTF-8
URL: https://github.com/Liubuntu/VCFArray
BugReports: https://github.com/Liubuntu/VCFArray/issues
Imports: tools, GenomicRanges, VariantAnnotation (>= 1.29.3),
        GenomicFiles (>= 1.17.3), S4Vectors (>= 0.19.19), Rsamtools
RoxygenNote: 6.1.1
VignetteBuilder: knitr
Suggests: SeqArray, BiocStyle, BiocManager, testthat, knitr, rmarkdown
git_url: https://git.bioconductor.org/packages/VCFArray
git_branch: devel
git_last_commit: 6821552
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-05 02:45:56 UTC; biocbuild
Author: Qian Liu [aut, cre],
  Martin Morgan [aut]
Maintainer: Qian Liu <qliu7@buffalo.edu>
Built: R 4.5.0; ; 2025-06-05 14:17:28 UTC; windows
