Package: SpatialOmicsOverlay
Title: Spatial Overlay for Omic Data from Nanostring GeoMx Data
Description: Tools for NanoString Technologies GeoMx Technology. Package to 
              easily graph on top of an OME-TIFF image. Plotting annotations 
              can range from tissue segment to gene expression.
Version: 1.9.1
Encoding: UTF-8
Authors@R: c(person("Maddy", "Griswold", email = "mgriswold@nanostring.com", role = c("cre","aut")),
             person("Megan", "Vandenberg", email = "mvandenberg@nanostring.com", role = c("ctb")),
             person("Stephanie", "Zimmerman", role = c("ctb")))
Depends: R (>= 4.1.0)
Imports: S4Vectors, Biobase, base64enc, EBImage, ggplot2, XML,
        scattermore, dplyr, pbapply, data.table, readxl, magick,
        grDevices, stringr, plotrix, GeomxTools, BiocFileCache, stats,
        utils, methods, ggtext, tools, RBioFormats
Suggests: knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0), stringi,
        qpdf, pheatmap, viridis, cowplot, vdiffr, sf
License: MIT
Collate: addImage.R addPlottingFactor.R coordinateGeneration.R
        imageManipulation.R omeExtraction.R plottingBasics.R
        readSpatialOverlay.R removeSamples.R SpatialPosition-class.R
        SpatialOverlay-class.R utils.R xmlParsing.R
biocViews: GeneExpression, Transcription, CellBasedAssays, DataImport,
        Transcriptomics, Proteomics, ProprietaryPlatforms, RNASeq,
        Spatial, DataRepresentation, Visualization
VignetteEngine: knitr::rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/SpatialOmicsOverlay
git_branch: devel
git_last_commit: 33cf5fb
git_last_commit_date: 2025-07-11
Repository: Bioconductor 3.22
Date/Publication: 2025-07-13
NeedsCompilation: no
Packaged: 2025-07-14 02:32:07 UTC; biocbuild
Author: Maddy Griswold [cre, aut],
  Megan Vandenberg [ctb],
  Stephanie Zimmerman [ctb]
Maintainer: Maddy Griswold <mgriswold@nanostring.com>
Built: R 4.5.1; ; 2025-07-14 14:03:58 UTC; windows
