Package: RgnTX
Title: Colocalization analysis of transcriptome elements in the
        presence of isoform heterogeneity and ambiguity
Version: 1.11.1
Authors@R: c(
    person("Yue", "Wang", , "yue.wang19@student.xjtlu.edu.cn", role = c("aut", "cre")),
    person("Jia", "Meng", , "jia.meng@xjtlu.edu.cn", role = c("aut")))
Description: RgnTX allows the integration of transcriptome annotations so as to model the complex alternative splicing patterns. It supports the testing of transcriptome elements without clear isoform association, which is often the real scenario due to technical limitations. It involves functions that do permutaion test for evaluating association between features and transcriptome regions. 
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.0
biocViews: AlternativeSplicing, Sequencing, RNASeq, MethylSeq,
        Transcription, SplicedAlignment
Imports: Seqinfo, GenomicFeatures, GenomicRanges, ggplot2, graphics,
        IRanges, methods, regioneR, S4Vectors, stats,
        TxDb.Hsapiens.UCSC.hg19.knownGene
Depends: R (>= 4.2.0)
Suggests: BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/RgnTX
git_branch: devel
git_last_commit: 8a121cf
git_last_commit_date: 2025-07-22
Repository: Bioconductor 3.22
Date/Publication: 2025-07-23
NeedsCompilation: no
Packaged: 2025-07-24 01:42:58 UTC; biocbuild
Author: Yue Wang [aut, cre],
  Jia Meng [aut]
Maintainer: Yue Wang <yue.wang19@student.xjtlu.edu.cn>
Built: R 4.5.1; ; 2025-07-24 13:58:58 UTC; windows
