Package: RCM
Type: Package
Title: Fit row-column association models with the negative binomial
        distribution for the microbiome
Version: 1.25.0
Authors@R: 
    c(person(given = "Stijn", family = "Hawinkel", 
    email = "stijn.hawinkel@psb.ugent.be", 
    role=c("cre", "aut"), comment = c(ORCID = "0000-0002-4501-5180")))
Description: Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis. In addition, diagnostic plot to detect lack of fit are available.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
Imports: RColorBrewer, alabama, edgeR, reshape2, tseries, stats, VGAM,
        ggplot2 (>= 2.2.1.9000), nleqslv, phyloseq, tensor, MASS,
        grDevices, graphics, methods
Depends: R (>= 4.0), DBI
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: Metagenomics, DimensionReduction, Microbiome, Visualization
BugReports: https://github.com/CenterForStatistics-UGent/RCM/issues
URL:
        https://bioconductor.org/packages/release/bioc/vignettes/RCM/inst/doc/RCMvignette.html/
git_url: https://git.bioconductor.org/packages/RCM
git_branch: devel
git_last_commit: fdd9fe5
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-05 01:31:56 UTC; biocbuild
Author: Stijn Hawinkel [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-4501-5180>)
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>
Built: R 4.5.0; ; 2025-06-05 13:46:43 UTC; windows
