{
    "pathwaycommons": [
        "http://www.pathwaycommons.org/archives/PC2/v12/",
        "PathwayCommons12.All.hgnc.sif.gz"
    ],
    "harmonizome": [
        "https://maayanlab.cloud/static/hdfs/harmonizome/data/",
        "%s/gene_attribute_edges.txt.gz"
    ],
    "vinayagam": [
        "https://www.science.org/action/downloadSupplement?",
        "doi=10.1126%%2Fscisignal.2001699&file=4_rs8_tables_s1_s2_and_s6.zip"
    ],
    "cpdb": [
        "http://cpdb.molgen.mpg.de/download/",
        "ConsensusPathDB_human_PPI.gz"
    ],
    "evex": [
        "http://evexdb.org/download/network-format/Metazoa/",
        "Homo_sapiens.tar.gz"
    ],
    "all_uniprots": [
        "https://%s.uniprot.org/uniprot/?",
        "query=*&format=tab&force=true&columns=%s&fil=",
        "organism:%d%s&compress=no"
    ],
    "uniprot_uploadlists": [
        "https://%s.uniprot.org/uploadlists/"
    ],
    "uniprot_idmapping_run": [
        "https://rest.uniprot.org/idmapping/run"
    ],
    "uniprot_idmapping_poll": [
        "https://rest.uniprot.org/idmapping/status/%s"
    ],
    "uniprot_idmapping_details": [
        "https://rest.uniprot.org/idmapping/details/%s"
    ],
    "uniprot_idmapping_fetch": [
        "https://rest.uniprot.org/idmapping/stream/%s"
    ],
    "uniprot_idmapping_id_types": [
        "https://rest.uniprot.org/configure/idmapping/fields"
    ],
    "new_uniprot" : [
        "https://rest.uniprot.org/uniprotkb/stream?",
        "format=tsv&fields=%s&query=organism_id:%d%s"
    ],
    "uniprot_backup": [
        "https://wwwdev.ebi.ac.uk/uniprot/api/uniprotkb/stream?",
        "format=tsv&fields=%s&query=organism_id:%d%s"
    ],
    "uniprot_organisms": [
        "https://ftp.expasy.org/databases/uniprot/current_release/",
        "knowledgebase/complete/docs/speclist.txt"
    ],
    "inbiomap": [
        "https://inbio-discover.com/api/data/map_public/",
        "2016_09_12/inBio_Map_core_2016_09_12.tar.gz"
    ],
    "inbiomap_login": [
        "https://inbio-discover.com/api/login_guest"
    ],
    "bioplex_1.0": [
        "https://bioplex.hms.harvard.edu/data/BioPlex_interactionList_v2.tsv"
    ],
    "bioplex_2.0": [
        "https://bioplex.hms.harvard.edu/data/BioPlex_interactionList_v4a.tsv"
    ],
    "bioplex_3.0": [
        "https://bioplex.hms.harvard.edu/data/",
        "BioPlex_293T_Network_10K_Dec_2019.tsv"
    ],
    "bioplex_HCT116_1.0": [
        "https://bioplex.hms.harvard.edu/data/",
        "BioPlex_HCT116_Network_5.5K_Dec_2019.tsv"
    ],
    "guide2pharma": [
        "https://www.guidetopharmacology.org/DATA/interactions.tsv"
    ],
    "ramilowski": [
        "https://static-content.springer.com/esm/",
        "art%%3A10.1038%%2Fncomms8866/MediaObjects/",
        "41467_2015_BFncomms8866_MOESM611_ESM.xlsx"
    ],
    "regnetwork": "https://regnetworkweb.org/download/%s.zip",
    "trrust": [
        "https://www.grnpedia.org/trrust/data/trrust_rawdata.%s.tsv"
    ],
    "htridb": "https://rescued.omnipathdb.org/HTRIdb.csv",
    "remap_dorothea": [
        "https://github.com/saezlab/dorothea/raw/master/inst/extdata/",
        "networks/chip_seq/remap/network.rds"
    ],
    "zenodo": "https://zenodo.org/record/%s/files/%s?download=1",
    "tfcensus": [
        "https://static-content.springer.com/esm/art%%3A10.1038%%2Fnrg2538/",
        "MediaObjects/41576_2009_BFnrg2538_MOESM6_ESM.txt"
    ],
    "nichenet_expression": [
        "https://zenodo.org/record/3260758/files/expression_settings.rds"
    ],
    "hpo": [
        "http://purl.obolibrary.org/obo/hp/hpoa/genes_to_phenotype.txt"
    ],
    "go_annot": [
        "http://current.geneontology.org/annotations/goa_%s.gaf.gz"
    ],
    "go_full": "http://purl.obolibrary.org/obo/go/%s.obo",
    "go_slim": [
        "http://current.geneontology.org/ontology/subsets/goslim_%s.obo"
    ],
    "kegg_list": "http://www.genome.jp/kegg/pathway.html",
    "kegg_kgml": [
        "https://www.kegg.jp/kegg-bin/download?entry=%s&format=kgml"
    ],
    "kegg_pathway": [
        "https://www.genome.jp/kegg-bin/show_pathway?",
        "map=%s&show_description=show"
    ],
    "kegg_pw_png": "https://www.genome.jp/kegg/pathway/%s/%s.png",
    "kegg_pw_info": "https://www.genome.jp/entry/pathway+%s",
    "kegg_rest": "https://rest.kegg.jp/%s",
    "preppi": [
        "https://honiglab.c2b2.columbia.edu/PrePPI/ref/",
        "preppi_final600.txt.tar.gz"
    ],
    "preppi_rescued": [
        "https://rescued.omnipathdb.org/",
        "preppi_final600.txt.tar.gz"
    ],
    "ensembl_organisms": [
        "https://www.ensembl.org/info/about/species.html"
    ],
    "biomart": [
        "http://www.ensembl.org/biomart/martservice?query=%s"
    ],
    "homologene": [
        "https://rescued.omnipathdb.org/homologene.data"
    ],
    "oma_species": ["https://omabrowser.org/All/oma-species.txt"],
    "oma_groups": ["https://omabrowser.org/All/oma-groups.txt.gz"],
    "oma_pairs": ["https://omabrowser.org/All/oma-pairs.txt.gz"],
    "oma_hogs": ["https://omabrowser.org/All/oma-hogs.orthoXML.gz"],
    "oma_pairwise_new" : [
        "https://omabrowser.org/api/pairs/%s/%s/?",
        "format=tsv&xrefs=%s&per_page=2000000"
    ],
    "omnipath_static": ["http://no-tls.static.omnipathdb.org/resources/"],
    "stitch_actions": [
      "http://stitch.embl.de/download/actions.v5.0/%s.actions.v5.0.tsv.gz"
    ],
    "stitch_links": [
      "http://stitch.embl.de/download/protein_chemical.links.detailed.v5.0/",
      "%s.protein_chemical.links.detailed.v5.0.tsv.gz"
    ],
    "chalmers_gem": [
        "https://raw.githubusercontent.com/SysBioChalmers/%s-GEM/main/model/%s"
    ],
    "hmdb": "https://hmdb.ca/system/downloads/current/%s.zip",
    "ramp": [
        "https://media.githubusercontent.com/media/ncats/RaMP-DB/",
        "main/db/RaMP_SQLite_v%s.sqlite.gz"
    ],
    "metalinksdb": [
        "https://rescued.omnipathdb.org/metalinks_v045.db"
    ]
}
