Package: OGRE
Type: Package
Title: Calculate, visualize and analyse overlap between genomic regions
Version: 1.13.1
Authors@R: c(
    person("Sven", "Berres", email="svenbioinf@gmail.com", role = c("aut","cre")),
    person("Jörg", "Gromoll", role = c("ctb")),
    person("Marius", "Wöste", role = c("ctb")),
    person("Sarah", "Sandmann", role = c("ctb")),
    person("Sandra", "Laurentino", role = c("ctb")))
Description: OGRE calculates overlap between user defined genomic region datasets. 
    Any regions can be supplied i.e. genes, SNPs, or reads from sequencing experiments. 
    Key numbers help analyse the extend of overlaps which can also be visualized at a genomic level.
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Imports: GenomicRanges, methods, data.table, assertthat, ggplot2, Gviz,
        IRanges, AnnotationHub, grDevices, stats, Seqinfo,
        GenomeInfoDb, shiny, shinyFiles, DT, rtracklayer,
        shinydashboard, shinyBS,tidyr
Depends: R (>= 4.2.0), S4Vectors
Suggests: testthat (>= 3.0.0), knitr (>= 1.36), rmarkdown (>= 2.11)
biocViews: Software, WorkflowStep, BiologicalQuestion, Annotation,
        Metagenomics, Visualization, Sequencing
BugReports: https://github.com/svenbioinf/OGRE/issues
URL: https://github.com/svenbioinf/OGRE/
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/OGRE
git_branch: devel
git_last_commit: e884207
git_last_commit_date: 2025-07-31
Repository: Bioconductor 3.22
Date/Publication: 2025-08-01
NeedsCompilation: no
Packaged: 2025-08-02 00:58:38 UTC; biocbuild
Author: Sven Berres [aut, cre],
  Jörg Gromoll [ctb],
  Marius Wöste [ctb],
  Sarah Sandmann [ctb],
  Sandra Laurentino [ctb]
Maintainer: Sven Berres <svenbioinf@gmail.com>
Built: R 4.5.1; ; 2025-08-02 14:17:59 UTC; windows
