Package: MsBackendRawFileReader
Type: Package
Title: Mass Spectrometry Backend for Reading Thermo Fisher Scientific
        raw Files
Version: 1.15.1
Authors@R: c(person(given = "Christian",
    family = "Panse", email = "cp@fgcz.ethz.ch", role = c("aut", "cre"),
    comment = c(ORCID = "0000-0003-1975-3064")),
	person(given = "Tobias", family = "Kockmann",
	  email = "Tobias.Kockmann@fgcz.ethz.ch", role = "aut", 
      comment = c(ORCID = "0000-0002-1847-885X")),
    person(given = "Roger", family = "Gine Bertomeu",
      email = "roger.gine@iispv.cat", role = "ctb",
      comment = c(ORCID = "0000-0003-0288-9619")))
Depends: R (>= 4.1), methods, Spectra (>= 1.15.10)
Imports: ProtGenerics (>= 1.35.3), MsCoreUtils, S4Vectors, IRanges,
        rawrr (>= 1.17.2), utils, BiocParallel
Suggests: BiocStyle (>= 2.5), ExperimentHub, MsBackendMgf, knitr,
        lattice, mzR, protViz (>= 0.7), rmarkdown, tartare (>= 1.5),
        testthat
Description: implements a MsBackend for the Spectra package using
  Thermo Fisher Scientific's NewRawFileReader .Net libraries.
  The package is generalizing the functionality introduced by the rawrr package
  Methods defined in this package are supposed to extend the Spectra
  Bioconductor package. 
URL: https://github.com/fgcz/MsBackendRawFileReader
BugReports: https://github.com/fgcz/MsBackendRawFileReader/issues
Encoding: UTF-8
NeedsCompilation: yes
biocViews: MassSpectrometry, Proteomics, Metabolomics
RoxygenNote: 7.3.2
License: GPL-3
SystemRequirements: mono-runtime 4.x or higher (including System.Data
        library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft
        Windows.
VignetteBuilder: knitr
Collate: 'hidden_aliases.R' 'AllGenerics.R'
        'MsBackendRawFileReader-functions.R' 'MsBackendRawFileReader.R'
        'benchmark.R' 'zzz.R'
git_url: https://git.bioconductor.org/packages/MsBackendRawFileReader
git_branch: devel
git_last_commit: 1998d81
git_last_commit_date: 2025-06-12
Repository: Bioconductor 3.22
Date/Publication: 2025-06-12
Packaged: 2025-06-13 00:39:10 UTC; biocbuild
Author: Christian Panse [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1975-3064>),
  Tobias Kockmann [aut] (ORCID: <https://orcid.org/0000-0002-1847-885X>),
  Roger Gine Bertomeu [ctb] (ORCID:
    <https://orcid.org/0000-0003-0288-9619>)
Maintainer: Christian Panse <cp@fgcz.ethz.ch>
Built: R 4.5.0; ; 2025-06-13 13:30:31 UTC; windows
