Package: MoleculeExperiment
Title: Prioritising a molecule-level storage of Spatial Transcriptomics
        Data
Version: 1.9.0
Authors@R: c(
    person("Bárbara Zita", "Peters Couto", email = "barbara.zita.peters@couto.de", role = c("aut")),
    person("Nicholas","Robertson", email = "nicholas.robertson@sydney.edu.au", role = c("aut")),
    person("Ellis", "Patrick", email = "ellis.patrick@sydney.edu.au", role = c("aut")),
    person("Shila", "Ghazanfar", email = "shazanfar@gmail.com", role = c("aut", "cre")))
Description: MoleculeExperiment contains functions to create and work with
    objects from the new MoleculeExperiment class. We introduce this class for
    analysing molecule-based spatial transcriptomics data (e.g., Xenium by 10X,
    Cosmx SMI by Nanostring, and Merscope by Vizgen). This allows researchers
    to analyse spatial transcriptomics data at the molecule level, and to have
    standardised data formats accross vendors.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
URL: https://github.com/SydneyBioX/MoleculeExperiment
BugReports: https://github.com/SydneyBioX/MoleculeExperiment/issues
Imports: SpatialExperiment, Matrix, purrr, data.table, dplyr (>=
        1.1.1), magrittr, rjson, utils, methods, terra, ggplot2, rlang,
        cli, EBImage, rhdf5, BiocParallel, S4Vectors, stats
Suggests: knitr, BiocStyle, testthat (>= 3.0.0)
VignetteBuilder: knitr
biocViews: DataImport, DataRepresentation, Infrastructure, Software,
        Spatial, Transcriptomics
Config/testthat/edition: 3
Depends: R (>= 4.1.0)
git_url: https://git.bioconductor.org/packages/MoleculeExperiment
git_branch: devel
git_last_commit: 3dd8051
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-05 00:31:46 UTC; biocbuild
Author: Bárbara Zita Peters Couto [aut],
  Nicholas Robertson [aut],
  Ellis Patrick [aut],
  Shila Ghazanfar [aut, cre]
Maintainer: Shila Ghazanfar <shazanfar@gmail.com>
Built: R 4.5.0; ; 2025-06-05 13:26:57 UTC; windows
