Package: MMUPHin
Type: Package
Title: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in
        Microbiome Studies
Version: 1.23.0
Author: Siyuan Ma
Maintainer: Siyuan MA <syma.research@gmail.com>
Description: MMUPHin is an R package for meta-analysis tasks of microbiome 
    cohorts. It has function interfaces for:
    a) covariate-controlled batch- and cohort effect adjustment, 
    b) meta-analysis differential abundance testing, 
    c) meta-analysis unsupervised discrete structure (clustering) discovery, and 
    d) meta-analysis unsupervised continuous structure discovery.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.1
VignetteBuilder: knitr
SystemRequirements: glpk (>= 4.57)
Depends: R (>= 3.6)
Imports: Maaslin2, metafor, fpc, igraph, ggplot2, dplyr, tidyr,
        stringr, cowplot, utils, stats, grDevices
Suggests: testthat, BiocStyle, knitr, rmarkdown, magrittr, vegan,
        phyloseq, curatedMetagenomicData, genefilter
biocViews: Metagenomics, Microbiome, BatchEffect
git_url: https://git.bioconductor.org/packages/MMUPHin
git_branch: devel
git_last_commit: 5f25fe9
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-05 00:26:30 UTC; biocbuild
Built: R 4.5.0; ; 2025-06-05 13:26:38 UTC; windows
