Package: InterCellar
Title: InterCellar: an R-Shiny app for interactive analysis and
        exploration of cell-cell communication in single-cell
        transcriptomics
Version: 2.15.0
Authors@R: person('Marta', 'Interlandi', email = 'marta.interlandi01@gmail.com', role = c('cre', 'aut'), comment = c(ORCID = "0000-0002-6863-2552") )
Description: InterCellar is implemented as an R/Bioconductor Package
  containing a Shiny app that allows users to interactively analyze cell-cell 
  communication from scRNA-seq data. Starting from precomputed ligand-receptor
  interactions, InterCellar provides filtering options, annotations and multiple visualizations
  to explore clusters, genes and functions. Finally, based on functional annotation from Gene 
  Ontology and pathway databases, InterCellar implements data-driven analyses to investigate
  cell-cell communication in one or multiple conditions.
License: MIT + file LICENSE
Imports: config, golem, shiny, DT, shinydashboard, shinyFiles,
        shinycssloaders, data.table, fs, dplyr, tidyr, circlize,
        colourpicker, dendextend, factoextra, ggplot2, plotly, plyr,
        shinyFeedback, shinyalert, tibble, umap, visNetwork,
        wordcloud2, readxl, htmlwidgets, colorspace, signal, scales,
        htmltools, ComplexHeatmap, grDevices, stats, tools, utils,
        biomaRt, rlang, fmsb, igraph
Encoding: UTF-8
RoxygenNote: 7.1.1
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, glue, graphite,
        processx, attempt, BiocStyle, httr
Config/testthat/edition: 3
URL: https://github.com/martaint/InterCellar
BugReports: https://github.com/martaint/InterCellar/issues
VignetteBuilder: knitr
biocViews: Software, SingleCell, Visualization, GO, Transcriptomics
Depends: R (>= 4.1)
git_url: https://git.bioconductor.org/packages/InterCellar
git_branch: devel
git_last_commit: 02bb84b
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-04 23:49:03 UTC; biocbuild
Author: Marta Interlandi [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-6863-2552>)
Maintainer: Marta Interlandi <marta.interlandi01@gmail.com>
Built: R 4.5.0; ; 2025-06-05 13:13:49 UTC; windows
