Package: HiLDA
Type: Package
Title: Conducting statistical inference on comparing the mutational
        exposures of mutational signatures by using hierarchical latent
        Dirichlet allocation
Depends: R(>= 4.1), ggplot2
Imports: R2jags, abind, cowplot, grid, forcats, stringr, GenomicRanges,
        S4Vectors, XVector, Biostrings, GenomicFeatures,
        BSgenome.Hsapiens.UCSC.hg19, BiocGenerics, tidyr, grDevices,
        stats, TxDb.Hsapiens.UCSC.hg19.knownGene, utils, methods, Rcpp
Suggests: knitr, rmarkdown, testthat, BiocStyle
Version: 1.23.0
Date: 2021-10-13
Authors@R: c(person("Zhi", "Yang", email = "zyang895@gmail.com", 
             role = c("aut", "cre")),
             person("Yuichi", "Shiraishi", email = "friend1ws@gmail.com", 
             role = "ctb"))
Description: A package built under the Bayesian framework of applying 
    hierarchical latent Dirichlet allocation. It statistically tests whether the 
    mutational exposures of mutational signatures (Shiraishi-model signatures) 
    are different between two groups. The package also provides inference and visualization. 
License: GPL-3
URL: https://github.com/USCbiostats/HiLDA,
        https://doi.org/10.1101/577452
BugReports: https://github.com/USCbiostats/HiLDA/issues
SystemRequirements: JAGS 4.0.0
biocViews: Software, SomaticMutation, Sequencing, StatisticalMethod,
        Bayesian
RoxygenNote: 7.1.2
LinkingTo: Rcpp
VignetteBuilder: knitr
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/HiLDA
git_branch: devel
git_last_commit: 3f1663e
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: yes
Packaged: 2025-06-04 23:43:49 UTC; biocbuild
Author: Zhi Yang [aut, cre],
  Yuichi Shiraishi [ctb]
Maintainer: Zhi Yang <zyang895@gmail.com>
Built: R 4.5.0; x86_64-w64-mingw32; 2025-06-05 13:10:48 UTC; windows
Archs: x64
