HTqPCR-package          Analysis of High-Throughput qPCR data (HTqPCR)
cbind                   Combine qPCRset objects
changeCtLayout          Changing the dimensions (rows x columns) of
                        qPCRset objects
clusterCt               Clustering of qPCR Ct values
filterCategory          Filter Ct values based on their feature
                        categories.
filterCtData            Filter out features (genes) from qPCR data.
heatmapSig              Heatmap of deltadeltaCt values from qPCR data.
limmaCtData             Differentially expressed features with qPCR:
                        limma
mannwhitneyCtData       Differentially expressed features with qPCR:
                        Mann-Whitney
normalizeCtData         Normalization of Ct values from qPCR data.
plotCVBoxes             Boxplots of CV for qPCR Ct values.
plotCtArray             Image plot of qPCR Ct values from an array
                        format
plotCtBoxes             Boxplots for qPCR Ct values.
plotCtCard              Image plot of qPCR Ct values from a card format
plotCtCategory          Summarising the feature categories for Ct
                        values.
plotCtCor               Correlation between Ct values from qPCR data
plotCtDensity           Distribution plot for qPCR Ct values.
plotCtHeatmap           Heatmap of qPCR Ct values.
plotCtHistogram         Histrogram of Ct values from qPCR experiments.
plotCtLines             Plotting Ct values from qPCR across multiple
                        samples.
plotCtOverview          Overview plot of qPCR Ct values across multiple
                        conditions.
plotCtPCA               PCA for qPCR Ct values.
plotCtPairs             Pairwise scatterplot of multiple sets of Ct
                        values from qPCR data.
plotCtRQ                Plot the relative quantification of Ct values
                        from qPCR experiments.
plotCtReps              Scatter plot of features analysed twice during
                        each qPCR experiment.
plotCtScatter           Scatterplot of two sets of Ct values from qPCR
                        data.
plotCtSignificance      Barplot with Ct values between genes from qPCR.
plotCtVariation         Plot variation in Ct values across replicates
qPCRpros                Example processed qPCR data
qPCRraw                 Example raw qPCR data.
qPCRset-class           Class "qPCRset"
readCtData              Reading Ct values from qPCR experiments data
                        into a qPCRset
setCategory             Assign categories to Ct values from qPCR data.
ttestCtData             Differentially expressed features with qPCR:
                        t-test
