Package: GrafGen
Title: Classification of Helicobacter Pylori Genomes
Version: 1.5.0
Date: 2024-12-16
Authors@R: c(person(given="William", family="Wheeler", role=c("aut", "cre"),
                email="wheelerb@imsweb.com"),
            person(given="Difei", family="Wang", role="aut",
                email="difei.wang2@nih.gov"),
            person(given="Isaac", family="Zhao", role="aut"),
            person(given="Yumi", family="Jin", role="aut"),
            person(given="Charles", family="Rabkin", role="aut", 
                email="rabkinc@exchange.nih.gov"))
Imports: stats, utils, graphics, ggplot2, plotly, scales, RColorBrewer,
        dplyr, grDevices, GenomicRanges, shiny, cowplot, ggpubr,
        stringr, rlang
Depends: R (>= 4.3.0)
Suggests: knitr, rmarkdown, RUnit, BiocManager, BiocGenerics,
        BiocStyle, devtools
Description: To classify Helicobacter pylori genomes according to genetic 
    distance from nine reference populations. The nine reference 
    populations are hpgpAfrica, hpgpAfrica-distant, hpgpAfroamerica, 
    hpgpEuroamerica, hpgpMediterranea, hpgpEurope, hpgpEurasia,
    hpgpAsia, and hpgpAklavik86-like.
    The vertex populations are Africa, Europe and Asia.
License: GPL-2
biocViews: Genetics, Software, GenomeAnnotation, Classification
NeedsCompilation: yes
BugReports: https://github.com/wheelerb/GrafGen/issues
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/GrafGen
git_branch: devel
git_last_commit: c26e7a8
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
Packaged: 2025-06-04 23:28:22 UTC; biocbuild
Author: William Wheeler [aut, cre],
  Difei Wang [aut],
  Isaac Zhao [aut],
  Yumi Jin [aut],
  Charles Rabkin [aut]
Maintainer: William Wheeler <wheelerb@imsweb.com>
Built: R 4.5.0; x86_64-w64-mingw32; 2025-06-05 13:07:51 UTC; windows
Archs: x64
