Package: Glimma
Type: Package
Title: Interactive visualizations for gene expression analysis
Version: 2.19.2
Authors@R: 
    c(
        person(
            "Shian", "Su",
            role = c("aut", "cre"),
            email = "su.s@wehi.edu.au"
        ),
        person(
            "Hasaru", "Kariyawasam",
            role = c("aut")
        ),
        person(
            "Oliver", "Voogd",
            role = c("aut")
        ),
        person(
            "Matthew", "Ritchie",
            role = c("aut")
        ),
        person(
            "Charity", "Law",
            role = c("aut")
        ),
        person(
            "Stuart", "Lee",
            role = c("ctb")
        ),
        person(
            "Isaac", "Virshup",
            role = c("ctb")
        )
    )
Description: This package produces interactive visualizations for RNA-seq data analysis, utilizing output from limma, edgeR, or DESeq2. It produces interactive htmlwidgets versions of popular RNA-seq analysis plots to enhance the exploration of analysis results by overlaying interactive features. The plots can be viewed in a web browser or embedded in notebook documents.
Encoding: UTF-8
RoxygenNote: 7.3.2
biocViews: DifferentialExpression, GeneExpression, Microarray,
        ReportWriting, RNASeq, Sequencing, Visualization
Depends: R (>= 4.0.0)
Imports: htmlwidgets, edgeR, DESeq2, limma, SummarizedExperiment,
        stats, jsonlite, methods, S4Vectors
Suggests: testthat, knitr, rmarkdown, BiocStyle, IRanges,
        GenomicRanges, pryr, AnnotationHub, scRNAseq, scater, scran,
        scRNAseq,
License: GPL-3
URL: https://github.com/hasaru-k/GlimmaV2
BugReports: https://github.com/hasaru-k/GlimmaV2/issues
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/Glimma
git_branch: devel
git_last_commit: ffb4760
git_last_commit_date: 2025-06-10
Repository: Bioconductor 3.22
Date/Publication: 2025-06-11
NeedsCompilation: no
Packaged: 2025-06-11 23:26:59 UTC; biocbuild
Author: Shian Su [aut, cre],
  Hasaru Kariyawasam [aut],
  Oliver Voogd [aut],
  Matthew Ritchie [aut],
  Charity Law [aut],
  Stuart Lee [ctb],
  Isaac Virshup [ctb]
Maintainer: Shian Su <su.s@wehi.edu.au>
Built: R 4.5.0; ; 2025-06-12 12:56:46 UTC; windows
