Package: GenomAutomorphism
Title: Compute the automorphisms between DNA's Abelian group
        representations
Version: 1.11.2
Authors@R: 
    person( given = "Robersy",
            family = "Sanchez",
            role = c("aut", "cre"),
            email = "genomicmath@gmail.com",
            comment = c(ORCID = "0000-0002-5246-1453"))
URL: https://github.com/genomaths/GenomAutomorphism
BugReports: https://github.com/genomaths/GenomAutomorphism/issues
Description: 
            This is a R package to compute the automorphisms between pairwise 
            aligned DNA sequences represented as elements from a Genomic 
            Abelian group. In a general scenario, from genomic regions till 
            the whole genomes from a given population (from any species or 
            close related species) can be algebraically represented as a 
            direct sum of cyclic groups or more specifically Abelian p-groups. 
            Basically, we propose the representation of multiple sequence 
            alignments of length N bp as element of a finite Abelian group 
            created by the direct sum of homocyclic Abelian group of 
            prime-power order.
Depends: R (>= 4.4.0),
License: Artistic-2.0
Encoding: UTF-8
biocViews: MathematicalBiology, ComparativeGenomics,
        FunctionalGenomics, MultipleSequenceAlignment, WholeGenome
Imports: Biostrings, BiocGenerics, BiocParallel, Seqinfo,
        GenomicRanges, IRanges, matrixStats, XVector, dplyr,
        data.table, parallel, doParallel, foreach, methods, S4Vectors,
        stats, numbers, utils
RoxygenNote: 7.3.2
Suggests: spelling, rmarkdown, BiocStyle, testthat (>= 3.0.0), knitr
Roxygen: list(markdown = TRUE)
Language: en-US
LazyData: false
Config/testthat/edition: 3
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/GenomAutomorphism
git_branch: devel
git_last_commit: 85d32ad
git_last_commit_date: 2025-07-28
Repository: Bioconductor 3.22
Date/Publication: 2025-07-29
NeedsCompilation: no
Packaged: 2025-07-29 23:26:06 UTC; biocbuild
Author: Robersy Sanchez [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5246-1453>)
Maintainer: Robersy Sanchez <genomicmath@gmail.com>
Built: R 4.5.1; ; 2025-07-30 13:21:40 UTC; windows
