Package: GNOSIS
Type: Package
Title: Genomics explorer using statistical and survival analysis in R
Version: 1.7.0
Description: GNOSIS incorporates a range of R packages enabling users to 
    efficiently explore and visualise clinical and genomic data obtained
    from cBioPortal. GNOSIS uses an intuitive GUI and multiple tab panels 
    supporting a range of functionalities. These include data upload and initial 
    exploration, data recoding and subsetting, multiple visualisations, 
    survival analysis, statistical analysis and mutation analysis, in addition 
    to facilitating reproducible research.
Authors@R: c( 
    person("Lydia", "King", ,"l.king18@universityofgalway.ie",
      c("aut", "cre"), c(ORCID = "0000-0002-0696-9811")
    ),
    person("Marcel", "Ramos", ,"marcel.ramos@roswellpark.org", "ctb")
  )
License: MIT + file LICENSE
Imports: DT, fontawesome, shinycssloaders, cBioPortalData, shinyjs,
        reshape2, RColorBrewer, survival, survminer, stats,
        compareGroups, rpart, partykit, DescTools, car, rstatix,
        fabricatr, shinylogs, magrittr
Depends: R (>= 4.3.0), shiny, shinydashboard, shinydashboardPlus,
        dashboardthemes, shinyWidgets, shinymeta, tidyverse,
        operator.tools, maftools
Suggests: BiocStyle, knitr, rmarkdown
biocViews: Software, ShinyApps, Survival, GUI
BugReports: https://github.com/Lydia-King/GNOSIS/issues
URL: https://github.com/Lydia-King/GNOSIS/
Video: https://doi.org/10.5281/zenodo.5788544
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
git_url: https://git.bioconductor.org/packages/GNOSIS
git_branch: devel
git_last_commit: ad81715
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-04 23:27:16 UTC; biocbuild
Author: Lydia King [aut, cre] (ORCID: <https://orcid.org/0000-0002-0696-9811>),
  Marcel Ramos [ctb]
Maintainer: Lydia King <l.king18@universityofgalway.ie>
Built: R 4.5.0; ; 2025-06-05 13:07:09 UTC; windows
