Package: Chicago
Type: Package
Title: CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Version: 1.37.1
Author: Jonathan Cairns, Paula Freire Pritchett, Steven Wingett, Mikhail Spivakov
Maintainer: Mikhail Spivakov <mikhail.spivakov@lms.mrc.ac.uk>
Description: A pipeline for analysing Capture Hi-C data.
License: Artistic-2.0
Depends: R (>= 3.3.1), data.table
Imports: matrixStats, MASS, Hmisc, Delaporte, methods, grDevices,
        graphics, stats, utils
Suggests: argparser, BiocStyle, knitr, rmarkdown, PCHiCdata, testthat,
        GenomeInfoDb, Rsamtools, GenomicInteractions, GenomicRanges,
        IRanges, AnnotationHub
VignetteBuilder: knitr
biocViews: Epigenetics, HiC, Sequencing, Software
git_url: https://git.bioconductor.org/packages/Chicago
git_branch: devel
git_last_commit: 75f4a3b
git_last_commit_date: 2025-07-01
Repository: Bioconductor 3.22
Date/Publication: 2025-07-01
NeedsCompilation: no
Packaged: 2025-07-01 21:59:22 UTC; biocbuild
Built: R 4.5.1; ; 2025-07-02 12:32:48 UTC; windows
