Package: AnnotationHub
Type: Package
Title: Client to access AnnotationHub resources
Version: 3.99.6
Authors@R: 
    c(person("Bioconductor Package", "Maintainer", email="maintainer@bioconductor.org",
             role="cre"),
      person("Martin", "Morgan", role="aut"),
      person("Marc", "Carlson", role="ctb"),
      person("Dan", "Tenenbaum", role="ctb"),
      person("Sonali", "Arora", role="ctb"),
      person("Valerie", "Oberchain", role="ctb"),
      person("Kayla", "Morrell", role="ctb"),
      person("Lori", "Shepherd", role="aut"))
biocViews: Infrastructure, DataImport, GUI, ThirdPartyClient
Description: This package provides a client for the Bioconductor
    AnnotationHub web resource. The AnnotationHub web resource
    provides a central location where genomic files (e.g., VCF, bed,
    wig) and other resources from standard locations (e.g., UCSC,
    Ensembl) can be discovered. The resource includes metadata about
    each resource, e.g., a textual description, tags, and date of
    modification. The client creates and manages a local cache of
    files retrieved by the user, helping with quick and reproducible
    access.
License: Artistic-2.0
Depends: BiocGenerics (>= 0.15.10), BiocFileCache (>= 2.99.3)
Imports: utils, methods, grDevices, RSQLite, BiocManager, BiocVersion,
        curl, rappdirs, AnnotationDbi (>= 1.31.19), S4Vectors, httr2,
        yaml, dplyr
Suggests: IRanges, Seqinfo, GenomeInfoDb, GenomicRanges,
        VariantAnnotation, Rsamtools, rtracklayer, BiocStyle, knitr,
        AnnotationForge, rBiopaxParser, RUnit, txdbmaker, MSnbase, mzR,
        Biostrings, CompoundDb, keras, ensembldb, SummarizedExperiment,
        ExperimentHub, gdsfmt, rmarkdown, HubPub
Enhances: AnnotationHubData
Collate: AnnotationHubOption.R AllGenerics.R Hub-class.R db-utils.R
        AnnotationHub-class.R AnnotationHubResource-class.R
        BEDResource-class.R ProteomicsResource-class.R
        EpigenomeResource-class.R EnsDbResource-class.R utilities.R
        sql-utils.R Hub-utils.R cache-utils.R zzz.R
VignetteBuilder: knitr
BugReports: https://github.com/Bioconductor/AnnotationHub/issues
NeedsCompilation: yes
RoxygenNote: 7.3.2
git_url: https://git.bioconductor.org/packages/AnnotationHub
git_branch: devel
git_last_commit: 21cf789
git_last_commit_date: 2025-06-20
Repository: Bioconductor 3.22
Date/Publication: 2025-06-22
Packaged: 2025-06-22 21:19:10 UTC; biocbuild
Author: Bioconductor Package Maintainer [cre],
  Martin Morgan [aut],
  Marc Carlson [ctb],
  Dan Tenenbaum [ctb],
  Sonali Arora [ctb],
  Valerie Oberchain [ctb],
  Kayla Morrell [ctb],
  Lori Shepherd [aut]
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
Built: R 4.5.1; ; 2025-06-23 11:40:57 UTC; windows
