Package: netSmooth
Type: Package
Title: Network smoothing for scRNAseq
Version: 1.30.0
Authors@R: c(person("Jonathan", "Ronen", role = c("aut", "cre"),
                     email = "yablee@gmail.com"),
              person("Altuna", "Akalin", role = c("aut")))
Description: netSmooth is an R package for network smoothing of single cell RNA
    sequencing data. Using bio networks such as protein-protein interactions as
    priors for gene co-expression, netsmooth improves cell type identification
    from noisy, sparse scRNAseq data.
biocViews: Network, GraphAndNetwork, SingleCell, RNASeq,
        GeneExpression, Sequencing, Transcriptomics, Normalization,
        Preprocessing, Clustering, DimensionReduction
URL: https://github.com/BIMSBbioinfo/netSmooth
BugReports: https://github.com/BIMSBbioinfo/netSmooth/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5), scater (>= 1.15.11), clusterExperiment (>= 2.1.6)
Imports: entropy, SummarizedExperiment, SingleCellExperiment, Matrix,
        cluster, data.table, stats, methods, DelayedArray, HDF5Array
        (>= 1.15.13)
Suggests: knitr, testthat, Rtsne, biomaRt, igraph, STRINGdb, NMI,
        pheatmap, ggplot2, BiocStyle, rmarkdown, BiocParallel, uwot
VignetteBuilder: knitr
RoxygenNote: 7.0.2
git_url: https://git.bioconductor.org/packages/netSmooth
git_branch: RELEASE_3_22
git_last_commit: e53eba9
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 04:42:52 UTC; biocbuild
Author: Jonathan Ronen [aut, cre],
  Altuna Akalin [aut]
Maintainer: Jonathan Ronen <yablee@gmail.com>
Built: R 4.5.1; ; 2025-10-30 12:28:33 UTC; unix
