GetDatExpr              Get expression data
PreservationPermutationTest
                        PreservationPermutationTest
PreservationScoreDistribution
                        PreservationScoreDistribution
TOMFlowPlot             TOMFlowPlot
WGCNA-class             The WGCNA Class
bidirectionalBestMatches
                        Best matching modules
cleanDatExpr            cleanDatExpr
coexpressionLineGraph   Coexpression Line Graph
computeOverlapsFromWGCNA
                        computeOverlapsFromWGCNA
constructNetworks       constructNetworks: Construct all the weighted
                        gene correlation networks
diffCoexpression        Differential co-expresison analysis
diffModuleExpression    Differential module expression
drawMultiWGCNAnetwork   Draw multiWGCNA network
getPreservation         getPreservation
iterate                 iterate: Iterate function across networks
makeTraitTable          Generate a trait table from a sample table
moduleComparisonPlot    Module comparison plot
moduleExpressionPlot    Plots an expression profile for a module
moduleToModuleHeatmap   Module to module heatmap
name                    name: Name of WGCNAobject
overlapComparisons      Overlap comparisons
performANOVA            Perform ANOVA
permutationTestResults
                        Permutation test results
preservationComparisonPlot
                        Preservation Comparison Scatterplot
preservationComparisons
                        Preservation comparisons
runDME                  Run differential module expression
summarizeResults        summarizeResults: Summarize results from a
                        results list object
topNGenes               topNGenes: Top N genes of a module
