# Generated by roxygen2: do not edit by hand

export(KRnorm)
export(MA_norm)
export(MD.plot1)
export(MD.plot2)
export(SCN)
export(cooler2bedpe)
export(cooler2sparse)
export(create.hic.table)
export(filter_params)
export(full2sparse)
export(hic_compare)
export(hic_diff)
export(hic_loess)
export(hic_simulate)
export(hicpro2bedpe)
export(make_InteractionSet)
export(manhattan_plot)
export(remove_centromere)
export(sim.other.methods)
export(sim_matrix)
export(sparse2full)
export(split_centromere)
export(total_sum)
export(visualize_pvals)
import(InteractionSet)
import(KernSmooth)
import(data.table)
import(ggplot2)
import(mgcv)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpmapply)
importFrom(BiocParallel,bpparam)
importFrom(BiocParallel,register)
importFrom(BiocParallel,registered)
importFrom(GenomicRanges,GRanges)
importFrom(IRanges,IRanges)
importFrom(IRanges,pintersect)
importFrom(IRanges,width)
importFrom(data.table,":=")
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,frank)
importFrom(data.table,is.data.table)
importFrom(data.table,rbindlist)
importFrom(data.table,setDF)
importFrom(data.table,setDT)
importFrom(data.table,setDTthreads)
importFrom(data.table,setkey)
importFrom(dplyr,"%>%")
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,right_join)
importFrom(dplyr,select)
importFrom(graphics,abline)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,persp)
importFrom(graphics,points)
importFrom(graphics,smoothScatter)
importFrom(gridExtra,grid.arrange)
importFrom(gtools,mixedorder)
importFrom(methods,is)
importFrom(pheatmap,pheatmap)
importFrom(rhdf5,h5dump)
importFrom(stats,approxfun)
importFrom(stats,density)
importFrom(stats,loess)
importFrom(stats,loess.control)
importFrom(stats,optim)
importFrom(stats,optimize)
importFrom(stats,p.adjust)
importFrom(stats,predict)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,rnbinom)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,t.test)
importFrom(stats,update)
importFrom(utils,read.table)
importFrom(utils,write.table)
