"Title","Description","BiocVersion","Genome","SourceType","SourceUrl","SourceVersion","Species","TaxonomyId","Coordinate_1_based","DataProvider","Maintainer","RDataClass","DispatchClass","RDataPath","Tags"
"chip_atlas_meta","Metadata associated with chip_atlas_promoters_f5","3.15",NA,"BED","https://www.chip-atlas.org","7/2021",NA,NA,NA,"ChIP-Atlas","Maciej Migdal <mcjmigdal@gmail.com>","data.table","Rda","xcoredata/chip_atlas_meta.rda",NA
"remap_meta","Metadata associated with remap_promoters_f5","3.15",NA,"BED","https://remap.univ-amu.fr/storage/remap2020/hg38/MACS2/remap2020_all_macs2_hg38_v1_0.bed.gz","ReMap2020",NA,NA,NA,"ReMap","Maciej Migdal <mcjmigdal@gmail.com>","data.table","Rda","xcoredata/remap_meta.rda",NA
"chip_atlas_promoters_f5","An intersection matrix describing overlaps between ChIP-Atlas's ChIP-seq tracks and promoters_f5. To find overlapping regions promoters were extended by 500bp in both directions.","3.15","GRCh38","BED","https://www.chip-atlas.org","7/2021","Homo sapiens","9606",NA,"ChIP-Atlas","Maciej Migdal <mcjmigdal@gmail.com>","dgCMatrix","Rda","xcoredata/chip_atlas_promoters_f5.rda",NA
"remap_promoters_f5","An intersection matrix describing overlaps between ReMap2020's ChIP-seq tracks and promoters_f5. To find overlapping regions promoters were extended by 500bp in both directions.","3.15","GRCh38","BED","https://remap.univ-amu.fr/storage/remap2020/hg38/MACS2/remap2020_all_macs2_hg38_v1_0.bed.gz","ReMap2020","Homo sapiens","9606",NA,"ReMap","Maciej Migdal <mcjmigdal@gmail.com>","dgCMatrix","Rda","xcoredata/remap_promoters_f5.rda",NA
"promoters_f5","FANTOM5's hg38 promoters annotated with nearest features in GENCODE ver. 38 annotation and UCSC hg38 knownGene annotation ver. 3.13.0.","3.15","GRCh38","BED","https://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v8/extra/CAGE_peaks/hg38_fair+new_CAGE_peaks_phase1and2.bed.gz","v8","Homo sapiens","9606",TRUE,"RIKEN","Maciej Migdal <mcjmigdal@gmail.com>","GRanges","Rda","xcoredata/promoters_f5.rda",NA
"promoters_f5_core","Core promoters selected from promoters_f5. Selection criteria were GENCODE confirmation and ENCODE ROADMAP confirmation. Further for each gene single promoter with highest FANTOM5 score was selected.","3.15","GRCh38","BED","https://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v8/extra/CAGE_peaks/hg38_fair+new_CAGE_peaks_phase1and2.bed.gz","v8","Homo sapiens","9606",TRUE,"RIKEN","Maciej Migdal <mcjmigdal@gmail.com>","GRanges","Rda","xcoredata/promoters_f5_core.rda",NA
"entrez2fantom","Vector mapping ENTREZ IDs to FANTOM5 core promoters names","3.15",NA,"BED","https://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v8/extra/CAGE_peaks/hg38_fair+new_CAGE_peaks_phase1and2.bed.gz",NA,"Homo sapiens","9606",NA,NA,"Maciej Migdal <mcjmigdal@gmail.com>","character","Rda","xcoredata/entrez2fantom.rda",NA
"symbol2fantom","Vector mapping gene symbols to FANTOM5 core promoters names","3.15",NA,"BED","https://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v8/extra/CAGE_peaks/hg38_fair+new_CAGE_peaks_phase1and2.bed.gz",NA,"Homo sapiens","9606",NA,NA,"Maciej Migdal <mcjmigdal@gmail.com>","character","Rda","xcoredata/symbol2fantom.rda",NA
