Package: BSgenome.Drerio.UCSC.danRer5.masked
Title: Full masked genome sequences for Danio rerio (UCSC version
        danRer5)
Description: Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Drerio.UCSC.danRer5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
Version: 1.3.99
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
        <maintainer@bioconductor.org>
Depends: BSgenome (>= 1.31.8), BSgenome.Drerio.UCSC.danRer5
Imports: BSgenome, BSgenome.Drerio.UCSC.danRer5
License: Artistic-2.0
organism: Danio rerio
species: Zebrafish
provider: UCSC
provider_version: danRer5
release_date: Jul. 2007
release_name: Sanger Institute Zv7
source_url: http://hgdownload.cse.ucsc.edu/goldenPath/danRer5/bigZips/
biocViews: AnnotationData, Genetics, BSgenome, Danio_rerio
Packaged: 2014-01-08 20:13:45 UTC; hpages
