CHANGES IN VERSION 1.2.0
------------------------

NEW FEATURES

  o It's now possible to set custom scoring and isogroup tables through
    triplex.search interface.

  o New triplex.score.table and triplex.group.table functions for getting
    default scoring and isogroup tables to make the customization process
    almost effortless.

  o Dynamic algorithm optimization technique implemented as a computational
    reduction based on minimal score option.

  o Optimized usage of processor data cache - the computation was divided
    into smaller pieces to prevent cache misses.


CHANGES IN VERSION 1.0.0
------------------------

BUG FIXES

  o Fixed P-value definition, Fixed P-value definition, now it depends on
    sequence length. See vignette for details.

  o Fixed splitting sequence into smaller computational pieces. The end
    of larger sequences was not searched properly.

  o Fixed handling of special IUPAC symbols (R, M, W, D, etc.). These are
    now cut off as N and - symbols.

  o Fixed scoring matrices for matches and geometrical compatibility. They
    were combined with wrong types of triplexes. Among other things this
    caused the output of the program to be slightly innaccurate for certain
    types of triplexes.
