###########################
## Hisat2-Paired_end.yml ##
###########################

idx_basedir:
  class: Directory
  path: ./data

idx_basename: tair10.fasta

fq1:
  class: File
  path: _FASTQ_PATH1_
fq2:
  class: File
  path: _FASTQ_PATH2_
  
SampleName: _SampleName_

results_path:
  class: Directory
  path: ./results

thread: 4

ModulesToLoad: 
  module1: hisat2/2.1.0
  module2: samtools/1.14

