#####################################
##   preprocessReads-PE_end.yml    ##
#####################################
results_path:
  class: Directory
  path: ./results

rscript_preprocessReads:
  class: File
  path: ./param/docopt.R/preprocessReads/preprocessReads.doc.R

fq1:
  class: File
  path: _FASTQ_PATH1_
  
fq2:
  class: File
  path: _FASTQ_PATH2_
  
SampleName: _SampleName_

Fct: '''trimbatch(fq, pattern="ACACGTCT", internalmatch=FALSE, minpatternlength=6, Nnumber=1, polyhomo=50, minreadlength=16, maxreadlength=101)'''

batchsize: 100000

overwrite: TRUE

compress: TRUE

