"ID","Header","Ref","Group","Country","Year","Strain","Accession","Identifier","Sequence_Length","Allowed_Start_fw","Allowed_End_fw","Allowed_Start_rev","Allowed_End_rev","Allowed_fw","Allowed_rev","Allowed_Start_fw_ali","Allowed_End_fw_ali","Allowed_Start_fw_initial","Allowed_End_fw_initial","Allowed_Start_fw_initial_ali","Allowed_End_fw_initial_ali","Allowed_Start_rev_ali","Allowed_End_rev_ali","Allowed_Start_rev_initial","Allowed_End_rev_initial","Allowed_Start_rev_initial_ali","Allowed_End_rev_initial_ali","Sequence","InputSequence","Run","Covered_By_Primers","Covered_By_Primers_fw","Covered_By_Primers_rev","primer_coverage","primer_coverage_fw","primer_coverage_rev"
"DQ676872",">Ref.A1.AU.03.PS1044_Day0.DQ676872","Ref","A1","AU","03","PS1044_Day0","DQ676872",1,2013,1,30,1471,1500,"atgggtgcgagagcgtcaatattaagcggg","ctctttggcaacgacccatcgtcacagtaa",1,30,1,30,1,30,1984,2013,1471,1500,1984,2013,"atgggtgcgagagcgtcaatattaagcgggggaagattagatgcatgggagaaaattcggctaaggccagggggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctggagagattcgcacttaaycctrgccttttagaatcagcagaaggatgtcaacaaataatggaacagttacaaccagctctyaagacaggawcagaagaaattaaatcattatttaatacagtagcaaccctctattgtgtacatcaaaggatagatgtaaaagacaccaaggaagctytagataaaatagaggaaataaaaaataagagcaagcaaaggactcaacaggcagcagctgacacaggaaacagcggcaaggtcagccaaaattaccctatagtgcaaaatgcacaggggcaaatgatacaycaaaacttgtcacctagaactttaaatgcatgggtaaaagtaatagaagaaaaggcttttagtccagaagtgatacccatgttctcagcattatcagaaggagccaccccacaagatttaaatgtaatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagacaccatcaatgaagaagctgcagaatgggacaggttacatccagtacatgcagggcctattccaccaggccagataagagaaccaaggggaagtgacatagcaggagctactagtacccctcaagaacaattacaatggatgacaggcaacccacctatcccagtgggagacatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctactagcattttggatataagacaagggccaaaagaatccttcagagactatgtagataggttctttaaagctcttagagctgagcaagctacacaggaggtaaaaagttggatgacagagacattactggtccaaaatgcaaatccagattgtaagtccattctaaaagcattaggatcaggagctacattagaagaaatgatgacagcatgccagggagtgggaggacccagccataaggcaagggttttggctgaagcaatgagtcaagcacaacaaacaagcataatgatgcagagaggcaactttaggggcggccagaaaaggattaagtgttttaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggagggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccagcaaggggaggccaggaaatttccctcagagcagaccagagccaacagccccaccagcggagctctttgggatgggggaagagataacctcccctccgaagcaggagcagaaggacaaggaacaggtcccacccttagtttccctcaaatcactctttggcaacgacccatcgtcacagtaa","atgggtgcgagagcgtcaatattaagcgggggaagattagatgcatgggagaaaattcggctaaggccagggggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctggagagattcgcacttaaycctrgccttttagaatcagcagaaggatgtcaacaaataatggaacagttacaaccagctctyaagacaggawcagaagaaattaaatcattatttaatacagtagcaaccctctattgtgtacatcaaaggatagatgtaaaagacaccaaggaagctytagataaaatagaggaaataaaa------------aat---------------------aag---------------agcaag------caaagg---------------------------------actcaacaggcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------aacagcggcaag------------------gtcagccaaaattaccctatagtgcaaaatgcacaggggcaaatgatacaycaaaacttgtcacctagaactttaaatgcatgggtaaaagtaatagaa---gaaaaggcttttagtccagaagtgatacccatgttctcagcattatcagaaggagccaccccacaagatttaaatgtaatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagacaccatcaatgaagaagctgcagaatgggacaggttacatccagtacatgcagggcctattccaccaggccagataagagaaccaaggggaagtgacatagcaggagctactagtacccctcaagaacaattacaatggatgaca---------ggcaacccacctatc---ccagtgggagacatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctactagcattttggatataagacaagggccaaaagaatccttcagagactatgtagataggttctttaaagctcttagagctgagcaagctacacaggaggtaaaaagttggatgacagagacattactggtc---caaaatgcaaatccagattgtaagtccattctaaaagcattaggatcaggagctacattagaagaaatgatgacagcatgccagggagtgggaggacccagccataaggcaagggttttggctgaagcaatg------------agtcaagcacaa------------------------caaacaagcataatgatgcagaga---ggcaac---tttaggggcggccagaaa---agg---attaagtgttttaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggagggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccagcaag---------ggg---aggccaggaaatttccctcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagcg---gagctctttgggatgggg---------------gaagagata---acctcccct------------------------ccgaagcaggagcag------------------------aaggacaag---------------------gaacaggtc------ccaccc---tta---gtttccctcaaatcactctttggcaacgacccatcgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"AB253421",">Ref.A1.RW.92.92RW008.AB253421","Ref","A1","RW","92","92RW008","AB253421",2,2013,1,30,1468,1497,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgaccccttgtcacagtaa",1,30,1,30,1,30,1984,2013,1468,1497,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagaatgaaacatctagtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagaaacaacagaaggatgtcaaaaaataatagaacagttacaaccatctgtcaagacaggaacagaagaacttaaatcattatttaatacagtagcaaccctctattgcgtacatcaacggatagatgtaaaagacaccaaggaagccctagataaaatagaggaaatgcaaaataagagcaagcaaaagacacaacaggcagcagctgacataggaaatagcagcaaggtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatgatatatcagtccatgtcacctaggactttgaatgcatgggtgaaagtaatagaagaaaagggtttcaacccagaagtaatacccatgttctcagcattatcagaaggagccaccccacaagatttaaatatgatgctaaacatagtggggggacatcaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagactgggacaggttacatccagtacaggcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccctcaagaacaaataggatggatgacaagcaacccacctatcccagtgggagacatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggatgtaaaacaagggccaaaagaaccctttagagattatgtagataggttctttaaaattctcagagctgaacaagctacacaggatgtaaaacattggatgacagaaacattgctgatccaaaatgcaaatccagattgtaagtccattttaagagcattaggaacaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagggttttagctgaggcaatgagtcaagtacaacatccaaacataatgatgcagagaggcaattttaggggccagaaaaggattaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccagcaaggggaggccaggaaattttcctcagagcagaccggagccatcagccccaccagcagagatctttgggataggggaagagatagcctcccctccgaagcaggagcagaaagacagggaaccggcccaacctttagtttccctcaaatcactctttggcaacgaccccttgtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagaatgaaacatctagtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagaaacaacagaaggatgtcaaaaaataatagaacagttacaaccatctgtcaagacaggaacagaagaacttaaatcattatttaatacagtagcaaccctctattgcgtacatcaacggatagatgtaaaagacaccaaggaagccctagataaaatagaggaaatgcaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------acacaacaggcagcagct---------------------------------gacatagga------------------------------------------------------------------------------------------aatagcagcaag------------------gtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatgatatatcagtccatgtcacctaggactttgaatgcatgggtgaaagtaatagaa---gaaaagggtttcaacccagaagtaatacccatgttctcagcattatcagaaggagccaccccacaagatttaaatatgatgctaaacatagtggggggacatcaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagactgggacaggttacatccagtacaggcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccctcaagaacaaataggatggatgaca---------agcaacccacctatc---ccagtgggagacatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggatgtaaaacaagggccaaaagaaccctttagagattatgtagataggttctttaaaattctcagagctgaacaagctacacaggatgtaaaacattggatgacagaaacattgctgatc---caaaatgcaaatccagattgtaagtccattttaagagcattaggaacaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagggttttagctgaggcaatg------------agtcaagtacaa------------------------catccaaacataatgatgcagaga---ggcaat---tttaggggc---cagaaa---agg---attaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccagcaag---------ggg---aggccaggaaattttcctcagagc------------------------------agaccg------gagccatcagcc---------------------------------------------------ccaccagca---gagatctttgggataggg---------------gaagagata---gcctcccct------------------------ccgaagcaggagcag------------------------aaagacagg---------------------gaaccggcc------caacct---tta---gtttccctcaaatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,11fw,12rev","1fw,11fw","4rev,7rev,12rev",5,2,3
"AB253429",">Ref.A1.UG.92.92UG037.AB253429","Ref","A1","UG","92","92UG037","AB253429",3,2013,1,30,1471,1500,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgacctcttgtcacagtaa",1,30,1,30,1,30,1984,2013,1471,1500,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattcggttaaggccagggggaaagaaaaaatatagattaaaacatctagtatgggcaagcagggagctggaaagatttgcacttaaccctagccttttagaaacaacagaaggatgtcaacaaataatggaacaattacaatcagctctcagaacaggaacagaagaacttagatcattatataatacagtagcaaccctctattgcgtacatcaacggatagaggtaaaagacaccaaggaagctctagataaaatagaggagatacaaaagaaaagcaagcaaaagacacagcaggcagcagctgacacaggaagtagcagcaaggtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatgatccaccagtccttgtcacctaggactttgaatgcatgggtgaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttctcagcattatcagaaggagccaccccacaagatttgaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggctacatccagtacatgcagggcctgttgcaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccctcaagaacaaatagcatggatgacaggcaacccacctatcccagtgggagacatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttagatataaaacaagggccaaaagaacccttcagagactatgtagataggttttttaaaactctcagagctgagcaagctacacaggaggtaaaaggttggatgacagaaacattactgatccaaaatgcaaatccagattgtaaatccatcctaagagcattaggagcaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacccggccataaagcaagagttttggctgaggcaatgagtcaagtacaacatacaaacataatgatgcagagaggcaattttaagggccagaaaaggattaagtgtttcaactgtggcaaagaaggacatctagccaaaaattgcagggctcctagaaaaaagggctgttggaaatgtggaagggaagggcaccaaatgaaggactgcactgagagacaggctaattttttagggaaaatctggccttccagcaaagggaggccaggaaattttcctcagagcagaccagaaccaacagccccaccagcagcagagatctttgggatgagggaagagatagtctcccctccgaagcaggagcagaacgacagggaccagaacccaccttcagtttccctcaaatcactctttggcaacgacctcttgtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattcggttaaggccagggggaaagaaaaaatatagattaaaacatctagtatgggcaagcagggagctggaaagatttgcacttaaccctagccttttagaaacaacagaaggatgtcaacaaataatggaacaattacaatcagctctcagaacaggaacagaagaacttagatcattatataatacagtagcaaccctctattgcgtacatcaacggatagaggtaaaagacaccaaggaagctctagataaaatagaggagatacaa------------aag---------------------aaa---------------agcaag------caaaag---------------------------------acacagcaggcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------agtagcagcaag------------------gtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatgatccaccagtccttgtcacctaggactttgaatgcatgggtgaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttctcagcattatcagaaggagccaccccacaagatttgaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggctacatccagtacatgcagggcctgttgcaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccctcaagaacaaatagcatggatgaca---------ggcaacccacctatc---ccagtgggagacatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttagatataaaacaagggccaaaagaacccttcagagactatgtagataggttttttaaaactctcagagctgagcaagctacacaggaggtaaaaggttggatgacagaaacattactgatc---caaaatgcaaatccagattgtaaatccatcctaagagcattaggagcaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacccggccataaagcaagagttttggctgaggcaatg------------agtcaagtacaa------------------------catacaaacataatgatgcagaga---ggcaat---tttaagggc---cagaaa---agg---attaagtgtttcaactgtggcaaagaaggacatctagccaaaaattgcagggctcctagaaaaaagggctgttggaaatgtggaagggaagggcaccaaatgaaggactgcact---------gag---agacaggctaattttttagggaaaatctgg---cct---tccagcaaa---------ggg---aggccaggaaattttcctcagagc------------------------------agacca------gaaccaacagcc---------------------------------------------------ccaccagcagcagagatctttgggatgagg---------------gaagagata---gtctcccct------------------------ccgaagcaggagcag------------------------aacgacagg---------------------gaccagaac------ccacct---tca---gtttccctcaaatcactctttggcaacgacctcttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,6rev,10rev,11fw,12rev","1fw,11fw","4rev,6rev,10rev,12rev",6,2,4
"AF286238",">Ref.A2.CD.97.97CDKTB48.AF286238","Ref","A2","CD","97","97CDKTB48","AF286238",4,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattgagcggc","ctctttggcaacgacctcttgtcacagtga",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattgagcggcggaaaattagaagcttgggagaaaattcggttaaggccagggggaaagaaaaaatatagactgaaacatttagtatgggcaagcagggagctggaaaaattctcaatcaaccccagccttttagaaacagaaacaggatgtagacgaatatttgggcaattacaaccagctctcgagacaggaacagaagaacttagatcattatataatacaatagcagtcctctactttgttcatcaaaagatagaggtaaaagacaccaaggaagctctagataaaatagaggaagaacaaaacaaatgcaagcagaagacacagcaggcagcagctgacacaggaagcagcagcagtcaaaattacagaggtagcagcagtcaaaattaccctatagtgcaaaatgcacaagggcaaatggtacaccaggccgtgtcacctaggactttgaatgcatgggtcaaagtagttgaagagaaggcttttagcccagaagtaatacccatgtttacagcattatcagaaggagccaccccacaagacttaaatactatgctaaacacagtggggggacatcaagcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggttacatccagtacaggcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcgggagctactagtaaccttcaggaacaaataggatggatgaccagcaacccacctattccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagataggttctttaaaactctcagagctgagcaagctacacaggaggtaaaaaattggatgacagacaccttgctggtccaaaatgcaaacccagattgtaaatccatcttgagggcattaggaccaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccggccataaagcaagggttttagctgaagcaatgagccaagtacaaaatacaaacataatgatacagagaggcaattttaagggtcaaaaaagaattaagtgtttcaactgtggcaaggaaggacacctagctagaaattgcagggcccctaggaaaaagggctgctggaaatgtgggaaggaaggacatcaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggccttccaacaaagggaggccagggaattttcctcagagcaggacagagccaacagccccaccaatggaggaagagataacctcctcgctgaagcaggagaacagggagccgtccacccctgcaatttccctcaaatcactctttggcaacgacctcttgtcacagtga","atgggtgcgagagcgtcagtattgagcggcggaaaattagaagcttgggagaaaattcggttaaggccagggggaaagaaaaaatatagactgaaacatttagtatgggcaagcagggagctggaaaaattctcaatcaaccccagccttttagaaacagaaacaggatgtagacgaatatttgggcaattacaaccagctctcgagacaggaacagaagaacttagatcattatataatacaatagcagtcctctactttgttcatcaaaagatagaggtaaaagacaccaaggaagctctagataaaatagaggaagaacaa------------aac---------------------aaa---------------tgcaag------cagaag---------------------------------acacagcaggcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------agcagcagcagtcaaaattacagaggtagcagcagtcaaaattaccctatagtgcaaaatgcacaagggcaaatggtacaccaggccgtgtcacctaggactttgaatgcatgggtcaaagtagttgaa---gagaaggcttttagcccagaagtaatacccatgtttacagcattatcagaaggagccaccccacaagacttaaatactatgctaaacacagtggggggacatcaagcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggttacatccagtacaggcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcgggagctactagtaaccttcaggaacaaataggatggatgacc---------agcaacccacctatt---ccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagataggttctttaaaactctcagagctgagcaagctacacaggaggtaaaaaattggatgacagacaccttgctggtc---caaaatgcaaacccagattgtaaatccatcttgagggcattaggaccaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccggccataaagcaagggttttagctgaagcaatg------------agccaagtacaa------------------------aatacaaacataatgatacagaga---ggcaat---tttaagggt---caaaaa---aga---attaagtgtttcaactgtggcaaggaaggacacctagctagaaattgcagggcccctaggaaaaagggctgctggaaatgtgggaaggaaggacatcaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaaa---------ggg---aggccagggaattttcctcagagc------------------------------aggaca------gagccaacagcc---------------------------------------------------ccaccaatg------------------gag---------------gaagagata---acctcctcg------------------------ctgaagcaggag------------------------------aacagg---------------------gagccgtcc------acccct---gca---atttccctcaaatcactctttggcaacgacctcttgtcacagtga","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"GU201516",">Ref.A2.CM.01.01CM_1445MV.GU201516","Ref","A2","CM","01","01CM_1445MV","GU201516",5,2013,0,23,1462,1491,"gcgagagcgtcagtattaagcgg","ctctttggcaacgaccccttgtcacagtaa",1,30,0,23,1,30,1984,2013,1462,1491,1984,2013,"gcgagagcgtcagtattaagcgggggaaaattagatgcttgggagaaaattcggttaaggccagggggaaggaaaaaatatagaatgaaacatttagtatgggcaagcagggagctggaaaaatactcaatcaaccctggtcttttagaaacatcggaaggatgtaaacaaataataaggcagttacattcagctctcccagtaggaacagaagaacttaaatcactatataatacaatagcagtcctctactatgtacatcaaaaaatagaggtaaaagacaccaaggaagccctagataaattagaggaggagcaaaacaaatacaagcagaagacacagcaggcagcagctgccacaggaaatagcagcagtcagaattatcccatagtgcaaaatgcacaagggcaaatggtgcaccaggccatatcgcctaggactttgaatgcatgggtcaaagtagtagaagaaaaagctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaatactatgctaaacacagtggggggacatcaagcagctatgcaaatgttaaaggataccatcaatgaggaagctgcagaatgggacagggtacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggatggatgaccagcaacccacctatcccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggcccaaagaaccctttagagactatgtagataggttctttaaaactctcagagctgaacaagctacacaggatgtaaaaaattggatgacagacaccttgctggtccaaaatgcgaacccagattgtaaaactatcctgagagcgttaggaccagcggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccggccataaagcaagggtcttggctgaagcaatgagccaaatacacagtacaaatcaaaatgtaatgatgcagagaggcaattttagaggtccaaaaagaattaagtgtttcaactgtggcaaggaaggacacctagccagaaattgcagggcccctaggaaaaagggttgctggaaatgtgggaaggaaggacatcaaatgaaagattgcactgagagacaggctaattttttagggaaaatctggcctcccaacaaagggaggccaggaaactttccccagagcagaacagagccaacagccccgccagcagagaacgttggaatgggggaagagatagcttcctcgtcgaagcaggaactgagaaacagggaacaacacactcctacaatttccctcagatcactctttggcaacgaccccttgtcacagtaa","------gcgagagcgtcagtattaagcgggggaaaattagatgcttgggagaaaattcggttaaggccagggggaaggaaaaaatatagaatgaaacatttagtatgggcaagcagggagctggaaaaatactcaatcaaccctggtcttttagaaacatcggaaggatgtaaacaaataataaggcagttacattcagctctcccagtaggaacagaagaacttaaatcactatataatacaatagcagtcctctactatgtacatcaaaaaatagaggtaaaagacaccaaggaagccctagataaattagaggaggagcaa------------aac---------------------aaa---------------tacaag------cagaag---------------------------------acacagcaggcagcagct---------------------------------gccacagga------------------------------------------------------------------------------------------aatagcagc------------------------agtcagaattatcccatagtgcaaaatgcacaagggcaaatggtgcaccaggccatatcgcctaggactttgaatgcatgggtcaaagtagtagaa---gaaaaagctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaatactatgctaaacacagtggggggacatcaagcagctatgcaaatgttaaaggataccatcaatgaggaagctgcagaatgggacagggtacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggatggatgacc---------agcaacccacctatc---ccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggcccaaagaaccctttagagactatgtagataggttctttaaaactctcagagctgaacaagctacacaggatgtaaaaaattggatgacagacaccttgctggtc---caaaatgcgaacccagattgtaaaactatcctgagagcgttaggaccagcggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccggccataaagcaagggtcttggctgaagcaatg------------agccaaatacacagtaca------------------aatcaaaatgtaatgatgcagaga---ggcaat---tttagaggt---ccaaaa---aga---attaagtgtttcaactgtggcaaggaaggacacctagccagaaattgcagggcccctaggaaaaagggttgctggaaatgtgggaaggaaggacatcaaatgaaagattgcact---------gag---agacaggctaattttttagggaaaatctgg---cct---cccaacaaa---------ggg---aggccaggaaactttccccagagc------------------------------agaaca------gagccaacagcc---------------------------------------------------ccgccagca---gagaacgttggaatgggg---------------gaagagata---gcttcctcg------------------------tcgaagcaggaactg------------------------agaaacagg---------------------gaacaacac------actcct---aca---atttccctcagatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","4rev,11fw,12rev","11fw","4rev,12rev",3,1,2
"AF286237",">Ref.A2.CY.94.94CY017_41.AF286237","Ref","A2","CY","94","94CY017_41","AF286237",6,2013,1,30,1462,1491,"atgggtgcgagagcgtcaatattaagcggg","ctctttggcaacgaccccttgttacagtaa",1,30,1,30,1,30,1984,2013,1462,1491,1984,2013,"atgggtgcgagagcgtcaatattaagcgggggaaaattagatgcttgggagaaaattcggttaaggccagggggaaagaaaaaatatagactgaaacatttggtatgggcaagcagggagctggagaaattctcaattaaccctggccttttagaaacaccagagggatgtagacaaataataaggcagttacaaccagctctccaaacaggaacagaagaacttaaatcattatataatacagtagtagtcctctactgggtacatcaaagggtagatgtaaaagacaccaaggaagctctagataaaatagaggaagaacaaaacaagcagaaaacacagcatgcagcagctgacacagggaacagcagcagtcaaaattatcccatagtgcaaaatgcacaagggcaaatggtacaccaggctatatcacctaggacgttgaatgcctgggtcaaagtagtagaagaaaaggctttcagcccagaagtaatacctatgtttacagcattatcagaaggagccaccccacaagacttaaatactatgctaaacacagtggggggacatcaagcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagggtacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggttggatgaccagcgatccacccatcccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagattatgtggataggttctttaaaactctaagagctgagcaagccacacaggaggtaaaaaactggatgacggacaccttgctggtccaaaatgcgaacccagattgtagatccatcttgagagcattaggaccaggggcctcattagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagggttttggctgaagcaatgagccatgtacaaagtacaaatacaaacataatgatgcagagaggcaattttaggggtcaaaaaagaattaagtgtttcaactgtggcaaggaaggacacctagccagaaattgcagggcccctaggaaaaagggctgctggaaatgtggaaaggaaggacatcaaatgaaagattgcactgagagacaggctaattttttagggaaaatttggccttccaacaaagggaggccaggaaattttcctcagagcagaacagagccaacagccccaccagcagagaacttgagaatgggggaagagataacctcctccctgaagcaggaactggagaccagggaaccatacaatcctgcaatttccctcaaatcactctttggcaacgaccccttgttacagtaa","atgggtgcgagagcgtcaatattaagcgggggaaaattagatgcttgggagaaaattcggttaaggccagggggaaagaaaaaatatagactgaaacatttggtatgggcaagcagggagctggagaaattctcaattaaccctggccttttagaaacaccagagggatgtagacaaataataaggcagttacaaccagctctccaaacaggaacagaagaacttaaatcattatataatacagtagtagtcctctactgggtacatcaaagggtagatgtaaaagacaccaaggaagctctagataaaatagaggaagaacaa------------aac---------------------aag---------------------------cagaaa---------------------------------acacagcatgcagcagct---------------------------------gacacaggg------------------------------------------------------------------------------------------aacagcagc------------------------agtcaaaattatcccatagtgcaaaatgcacaagggcaaatggtacaccaggctatatcacctaggacgttgaatgcctgggtcaaagtagtagaa---gaaaaggctttcagcccagaagtaatacctatgtttacagcattatcagaaggagccaccccacaagacttaaatactatgctaaacacagtggggggacatcaagcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagggtacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggttggatgacc---------agcgatccacccatc---ccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagattatgtggataggttctttaaaactctaagagctgagcaagccacacaggaggtaaaaaactggatgacggacaccttgctggtc---caaaatgcgaacccagattgtagatccatcttgagagcattaggaccaggggcctcattagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagggttttggctgaagcaatg------------agccatgtacaaagtaca------------------aatacaaacataatgatgcagaga---ggcaat---tttaggggt---caaaaa---aga---attaagtgtttcaactgtggcaaggaaggacacctagccagaaattgcagggcccctaggaaaaagggctgctggaaatgtggaaaggaaggacatcaaatgaaagattgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaaa---------ggg---aggccaggaaattttcctcagagc------------------------------agaaca------gagccaacagcc---------------------------------------------------ccaccagca---gagaacttgagaatgggg---------------gaagagata---acctcctcc------------------------ctgaagcaggaactg------------------------gagaccagg---------------------gaaccatac------aatcct---gca---atttccctcaaatcactctttggcaacgaccccttgttacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"K03455",">Ref.B.FR.83.HXB2_LAI_IIIB_BRU.K03455","Ref","B","FR","83","HXB2_LAI_IIIB_BRU","K03455",7,2013,1,30,1474,1503,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccctcgtcacaataa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggagaattagatcgatgggaaaaaattcggttaaggccagggggaaagaaaaaatataaattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctgttagaaacatcagaaggctgtagacaaatactgggacagctacaaccatcccttcagacaggatcagaagaacttagatcattatataatacagtagcaaccctctattgtgtgcatcaaaggatagagataaaagacaccaaggaagctttagacaagatagaggaagagcaaaacaaaagtaagaaaaaagcacagcaagcagcagctgacacaggacacagcaatcaggtcagccaaaattaccctatagtgcagaacatccaggggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtagtagaagagaaggctttcagcccagaagtgatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagagtgcatccagtgcatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggatggatgacaaataatccacctatcccagtaggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctaccagcattctggacataagacaaggaccaaaggaaccctttagagactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggaggtaaaaaattggatgacagaaaccttgttggtccaaaatgcgaacccagattgtaagactattttaaaagcattgggaccagcggctacactagaagaaatgatgacagcatgtcagggagtaggaggacccggccataaggcaagagttttggctgaagcaatgagccaagtaacaaattcagctaccataatgatgcagagaggcaattttaggaaccaaagaaagattgttaagtgtttcaattgtggcaaagaagggcacacagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagattgtactgagagacaggctaattttttagggaagatctggccttcctacaagggaaggccagggaattttcttcagagcagaccagagccaacagccccaccagaagagagcttcaggtctggggtagagacaacaactccccctcagaagcaggagccgatagacaaggaactgtatcctttaacttccctcaggtcactctttggcaacgacccctcgtcacaataa","atgggtgcgagagcgtcagtattaagcgggggagaattagatcgatgggaaaaaattcggttaaggccagggggaaagaaaaaatataaattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctgttagaaacatcagaaggctgtagacaaatactgggacagctacaaccatcccttcagacaggatcagaagaacttagatcattatataatacagtagcaaccctctattgtgtgcatcaaaggatagagataaaagacaccaaggaagctttagacaagatagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaaaa---------------------------------gcacagcaagcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------cacagcaatcag------------------gtcagccaaaattaccctatagtgcagaacatccaggggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtagtagaa---gagaaggctttcagcccagaagtgatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagagtgcatccagtgcatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggatggatgaca---------aataatccacctatc---ccagtaggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctaccagcattctggacataagacaaggaccaaaggaaccctttagagactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggaggtaaaaaattggatgacagaaaccttgttggtc---caaaatgcgaacccagattgtaagactattttaaaagcattgggaccagcggctacactagaagaaatgatgacagcatgtcagggagtaggaggacccggccataaggcaagagttttggctgaagcaatg------------agccaagtaacaaat---------------------tcagctaccataatgatgcagaga---ggcaat---tttaggaac---caaaga---aagattgttaagtgtttcaattgtggcaaagaagggcacacagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagattgtact---------gag---agacaggctaattttttagggaagatctgg---cct---tcctacaag---------gga---aggccagggaattttcttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagaa---gagagcttcaggtctggg---------------gtagagacaacaactccccct------------------------cagaagcaggagccg------------------------atagacaag---------------------gaactgtat---------cct---tta---acttccctcaggtcactctttggcaacgacccctcgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"AY423387",">Ref.B.NL.00.671_00T36.AY423387","Ref","B","NL","00","671_00T36","AY423387",8,2013,1,30,1513,1542,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccatagtcacaataa",1,30,1,30,1,30,1984,2013,1513,1542,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggagaattagatagatgggaaaaaattcggttaaggccagggggaaagaaaagatataaattaaaacatatagtatgggcaagcagagagctagaacgattcgcagttaatcctggccttttagagacatcagaaggctgtagacaaatactgggacagctacaaccagcccttcagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtgcatgcaaggatagaggtaaaagacaccaaggaagctttagaaaaaatagaggaagaacaaaacaaaagtaagaaacgggcacagcaagcacagcaagcagaagctgacgcaggaaaaaacaacccggtcagccagaattaccctatagtgcagaatctccaagggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtagtagaagagaaggccttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagattgcatccagtgcatgccgggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggatggatgacaaataatccacctatcccagtaggagaaatatataagagatggataatcctgggattaaataaaatagtaagaatgtatagccctaccagcattctggacataaaacaaggaccaaaggaaccctttagagactatgtagatcggttctataaaactttaagagctgagcaagcctcacaggaagtaaaaaattggatgacagaaaccttgttggtccaaaattcgaacccagattgtaaaactattttaaaagcattgggaccagcagctacactagaagaaatgatgaccgcatgtcagggagtagggggacccggccataaagcgagagttttggctgaggcaatgagccaagtaacaagtgcacctgccataatgatgcagagaggcaatcatagaaaccaaagaaggactgttaagtgtttcaattgtggcaaagaagggcacatagccagaaattgcagggcccctagnaaaaagggctgttggaaatgtgnaaagnaaggacaccaaatgaaagattgtactnagagacaggctanttttttagggaagatttggccttcccacaaggggaggccagggaattttcttcagagcagaccagagccaacagccccttctcagagcagaccagagccaacagccccaccagaagagagcttcaggtttggggaagagacaacaactccctctcagaggcaggagccaacagacaaggaactgtatcctttagcttccctcaaatcactctttggcagcgacccatagtcacaataa","atgggtgcgagagcgtcagtattaagcgggggagaattagatagatgggaaaaaattcggttaaggccagggggaaagaaaagatataaattaaaacatatagtatgggcaagcagagagctagaacgattcgcagttaatcctggccttttagagacatcagaaggctgtagacaaatactgggacagctacaaccagcccttcagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtgcatgcaaggatagaggtaaaagacaccaaggaagctttagaaaaaatagaggaagaacaa------------aac---------------------aaa---------------agtaag------aaacgg------------------gcacagcaa------gcacagcaagcagaagct---------------------------------gacgcagga------------------------------------------------------------------------------------------aaaaacaacccg------------------gtcagccagaattaccctatagtgcagaatctccaagggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtagtagaa---gagaaggccttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagattgcatccagtgcatgccgggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggatggatgaca---------aataatccacctatc---ccagtaggagaaatatataagagatggataatcctgggattaaataaaatagtaagaatgtatagccctaccagcattctggacataaaacaaggaccaaaggaaccctttagagactatgtagatcggttctataaaactttaagagctgagcaagcctcacaggaagtaaaaaattggatgacagaaaccttgttggtc---caaaattcgaacccagattgtaaaactattttaaaagcattgggaccagcagctacactagaagaaatgatgaccgcatgtcagggagtagggggacccggccataaagcgagagttttggctgaggcaatg------------agccaagtaacaagt---------------------gcacctgccataatgatgcagaga---ggcaat---catagaaac---caaaga---aggactgttaagtgtttcaattgtggcaaagaagggcacatagccagaaattgcagggcccctagnaaaaagggctgttggaaatgtgnaaagnaaggacaccaaatgaaagattgtact---------nag---agacaggctanttttttagggaagatttgg---cct---tcccacaag---------ggg---aggccagggaattttcttcagagc------------------------------agacca------gagccaacagcc----------------ccttctcagagcagaccagagccaac---agcc--ccaccagaa---gagagcttcaggtttggg---------------gaagagacaacaactccctct------------------------cagaggcaggagcca------------------------acagacaag---------------------gaactgtat---------cct---tta---gcttccctcaaatcactctttggcagcgacccatagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,11fw,12rev","1fw,11fw","4rev,12rev",4,2,2
"AY173951",">Ref.B.TH.90.BK132.AY173951","Ref","B","TH","90","BK132","AY173951",9,2013,1,30,1474,1503,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccctcgtcacaataa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggacaattagatagatgggagaaaattcggttacggccagggggaaagaaaaaatatagattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctattggaaacatcagaaggctgtagacaaatactgggacagctacaaccaagccttcagacaggatcagaagaacttagatcattatataatacaatagcagtcctctattgtgtacatcaaaagatagaggtaaaagacaccaaggaagctttagagaagatagaggaagaacaaaacaaaagtaagaaaaaggcacagcaagcagcagctaacacagaaaacagcagccaggttagccaaaattaccctatagtgcaaaatatgcaggggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtagtagaagaaaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagattgcatccagtgcatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggatggatgacacataatccacctatcccagtgggagaaatttacaaaagatggataatcctgggattaaataaaatagtaaggatgtatagccctaccagcattttggacataagacaaggaccaaaggaaccctttagagactatgtagaccggttctataagactctaagagccgagcaagcctcacaggaggtaaaaaattggatgacagaaaccttgttggtccaaaatgcgaacccagattgtaagactattttaaaagcattgggaccagcagctacactagaagaaatgatgacagcatgtcagggagtgggaggtcccggccataaggcaagagttttggcggaagcaatgagccaagtgacaaattcagctaccataatgatgcagaaaggcaattttaggaaccaaagaaagattgttaagtgtttcaattgtggcaaagaagggcacatagcccgaaattgcagggcccctaggaagaagggctgttggagatgtggaaaggaaggacaccaaatgaaagattgtactgaaagacaggctaattttttagggaaaatctggccttcccacaagggaaggccagggaattttcttcagagcagaccagagccgacagccccaccagcagagagcttcaggtttggggaagagacaacaactccctctcagaagcaggagacaatagacaaggaactatatcctttaactgccctcaaatcactctttggcaacgacccctcgtcacaataa","atgggtgcgagagcgtcagtattaagcgggggacaattagatagatgggagaaaattcggttacggccagggggaaagaaaaaatatagattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctattggaaacatcagaaggctgtagacaaatactgggacagctacaaccaagccttcagacaggatcagaagaacttagatcattatataatacaatagcagtcctctattgtgtacatcaaaagatagaggtaaaagacaccaaggaagctttagagaagatagaggaagaacaa------------aac---------------------aaa---------------agtaag------aaaaag---------------------------------gcacagcaagcagcagct---------------------------------aacacagaa------------------------------------------------------------------------------------------aacagcagccag------------------gttagccaaaattaccctatagtgcaaaatatgcaggggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtagtagaa---gaaaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagattgcatccagtgcatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggatggatgaca---------cataatccacctatc---ccagtgggagaaatttacaaaagatggataatcctgggattaaataaaatagtaaggatgtatagccctaccagcattttggacataagacaaggaccaaaggaaccctttagagactatgtagaccggttctataagactctaagagccgagcaagcctcacaggaggtaaaaaattggatgacagaaaccttgttggtc---caaaatgcgaacccagattgtaagactattttaaaagcattgggaccagcagctacactagaagaaatgatgacagcatgtcagggagtgggaggtcccggccataaggcaagagttttggcggaagcaatg------------agccaagtgacaaat---------------------tcagctaccataatgatgcagaaa---ggcaat---tttaggaac---caaaga---aagattgttaagtgtttcaattgtggcaaagaagggcacatagcccgaaattgcagggcccctaggaagaagggctgttggagatgtggaaaggaaggacaccaaatgaaagattgtact---------gaa---agacaggctaattttttagggaaaatctgg---cct---tcccacaag---------gga---aggccagggaattttcttcagagc------------------------------agacca------gagccgacagcc---------------------------------------------------ccaccagca---gagagcttcaggtttggg---------------gaagagacaacaactccctct------------------------cagaagcaggagaca------------------------atagacaag---------------------gaactatat---------cct---tta---actgccctcaaatcactctttggcaacgacccctcgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"AY331295",">Ref.B.US.98.1058_11.AY331295","Ref","B","US","98","1058_11","AY331295",10,2013,0,17,1453,1482,"gcgtcagtattaagcgg","ctctttggcaacgacccctcgtcacaataa",1,30,0,17,1,30,1984,2013,1453,1482,1984,2013,"gcgtcagtattaagcgggggaaaattagatacatgggagaaaattcggttaaggccagggggaaagaaaaaatataaattaaaacatatagtatgggcaagcagggagctagaacgatttgcacttaaccctggcctgttagaaacagcagaaggctgtagacaattattgggacagctacagccatcccttcaaacaggatcagaagaacttaaatcattatttaatacaatagcaaccctctattgtgtacatcaaaggatagaggtaagagacaccaaagaggctttagacaagatagaggaagagcaaaacaaaagtaagaaaaaagcacagcaagcagcagctgcagctgacacaggaaacagcagccaggtcagccaaaattaccctatagtgcagaacctccaagggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtaatagaagagaaggcttttagcccagaagtaatacccatgtttgcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagaaaccatcaatgaggaagctgcagaatgggatagaatacatccagcgcaagcagggcctatagcaccaggccagataagagacccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataacatggatgacaaataatccacctatcccagtaggagaaatctataaaaaatggataatcatgggattaaataaaatagtaaggatgtatagtcctaccagcattctggacataagacaaggaccaaaggaaccctttagggactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggaggtaaaaaattggatgacagaaaccttgttggtccaaaacgcgaacccagattgtaagactatattaaaagcattaggaccagcagctacactagaggaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttggctgaagcaatgagccaagtaacaaattcaggtgccataatgatgcagaaaggcaattttaggaaccaggttgttaggtgtttcaattgtggcaaagtagggcacatagccaaaaattgcagggcccctaggaagaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagattgtgatcagagacaggctaattttttagggaagatctggccttcccacaaaggaaggccagggaattttcttcagagcagaccagagccaacagccccaccagcagagagcttcaggtttggggaggagacaacaactccctctcagaagcaggagccacaagaatatcctttagcttccctcagatcactctttggcaacgacccctcgtcacaataa","------------gcgtcagtattaagcgggggaaaattagatacatgggagaaaattcggttaaggccagggggaaagaaaaaatataaattaaaacatatagtatgggcaagcagggagctagaacgatttgcacttaaccctggcctgttagaaacagcagaaggctgtagacaattattgggacagctacagccatcccttcaaacaggatcagaagaacttaaatcattatttaatacaatagcaaccctctattgtgtacatcaaaggatagaggtaagagacaccaaagaggctttagacaagatagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaaaa---------------------------------gcacagcaagcagcagct---------------------------gcagctgacacagga------------------------------------------------------------------------------------------aacagcagccag------------------gtcagccaaaattaccctatagtgcagaacctccaagggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtaatagaa---gagaaggcttttagcccagaagtaatacccatgtttgcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagaaaccatcaatgaggaagctgcagaatgggatagaatacatccagcgcaagcagggcctatagcaccaggccagataagagacccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataacatggatgaca---------aataatccacctatc---ccagtaggagaaatctataaaaaatggataatcatgggattaaataaaatagtaaggatgtatagtcctaccagcattctggacataagacaaggaccaaaggaaccctttagggactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggaggtaaaaaattggatgacagaaaccttgttggtc---caaaacgcgaacccagattgtaagactatattaaaagcattaggaccagcagctacactagaggaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttggctgaagcaatg------------agccaagtaacaaat---------------------tcaggtgccataatgatgcagaaa---ggcaat---tttaggaac---cag---------gttgttaggtgtttcaattgtggcaaagtagggcacatagccaaaaattgcagggcccctaggaagaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagattgtgat---------cag---agacaggctaattttttagggaagatctgg---cct---tcccacaaa---------gga---aggccagggaattttcttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcaggtttggg---------------gaggagacaacaactccctct------------------------cagaagcaggagcca------------------------caagaa------------------------tat---------------cct---tta---gcttccctcagatcactctttggcaacgacccctcgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","4rev,10rev,11fw,12rev","11fw","4rev,10rev,12rev",4,1,3
"U52953",">Ref.C.BR.92.BR025_d.U52953","Ref","C","BR","92","BR025_d","U52953",11,2013,1,30,1462,1491,"atgggtgcgagagcgtcaatattaagaggc","ctctttggcagcgaccccttgtcaacataa",1,30,1,30,1,30,1984,2013,1462,1491,1984,2013,"atgggtgcgagagcgtcaatattaagaggcggaaaattagatgcttgggaaagaattaagttaaagccagggggaaagaaacactatatgatgaaacacctagtctgggcaagcagggagctggaaagatttgcacttgaccctggccttttagagacatccgaaggctgtaaacaaataatgaaacagctacaaccagctcttcagacaggaacaaaggaacttatatcattacataatacggttgcaactctctattgtgtacatgaaaagatagatgtacgagacaccaaggaagccttagacaaaataaaggaagaacaaaacaaaagtcagcaaaaaacacagcaggcagaagcggctgacaaaggaaaggtcagtcaaaattatcctatagtacagaatctccaagggcaaatggtacaccagcccatatcagctagaactttgaatgcgtgggtaaaggtagtagaggagaaggctttcagcccagaggtaatacccatgtttacagcattatcagaaggagccaccccacaagatttaaacaccatgttaaatacagtggggggacaccaagcagccatgcaaatgttaaaagataccatcaatgaggaggctgcagaatgggatagattacatccagtgcatgcagggcctgtcgcaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactaccagtacccttcaggaacaaataacatggatgacaaataacccacctgtcccagtaggagacatctataaaagatggataattctggggttaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactctaagagcagagcaagctacccaagatgtaaaaaattggatgacagataccttgttggtccaaaatgcgaacccagattgtaagaccattttaagagcattagggccaggggcttcattagaagaaatgatgacagcatgtcagggagtgggaggacctggccacaaagcaagagtgttggctgaggcaatgagcaaagtaaacaatacaaacataatgatgcaaagaagcaattgtaaaggccctaaaagaactattaaatgcttcaactgtggcaaggaagggcacttagccagaaattgcagggctcctaggaaaaaaggctgttggaaatgtggaaaagaaggacaccaagtgaaagactgtactgagaggcaggctaattttttagggaaaatttggccttcccacagggggaggccaggaaatcttcttcagaacagaacagagccaacagccccaccagaagagagcttcaggtttggggaagagacaacaactccctctcggaagcaggagacgatagacaaggaactgcccttaacttccctcaaatcactctttggcagcgaccccttgtcaacataa","atgggtgcgagagcgtcaatattaagaggcggaaaattagatgcttgggaaagaattaagttaaagccagggggaaagaaacactatatgatgaaacacctagtctgggcaagcagggagctggaaagatttgcacttgaccctggccttttagagacatccgaaggctgtaaacaaataatgaaacagctacaaccagctcttcagacaggaacaaaggaacttatatcattacataatacggttgcaactctctattgtgtacatgaaaagatagatgtacgagacaccaaggaagccttagacaaaataaaggaagaacaa------------aac---------------------aaa---------------agtcag------caaaaa---------------------------------acacagcaggcagaagcg------------------------------gctgacaaagga---------------------------------------------------------------------------------------------------aag------------------gtcagtcaaaattatcctatagtacagaatctccaagggcaaatggtacaccagcccatatcagctagaactttgaatgcgtgggtaaaggtagtagag---gagaaggctttcagcccagaggtaatacccatgtttacagcattatcagaaggagccaccccacaagatttaaacaccatgttaaatacagtggggggacaccaagcagccatgcaaatgttaaaagataccatcaatgaggaggctgcagaatgggatagattacatccagtgcatgcagggcctgtcgcaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactaccagtacccttcaggaacaaataacatggatgaca---------aataacccacctgtc---ccagtaggagacatctataaaagatggataattctggggttaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactctaagagcagagcaagctacccaagatgtaaaaaattggatgacagataccttgttggtc---caaaatgcgaacccagattgtaagaccattttaagagcattagggccaggggcttcattagaagaaatgatgacagcatgtcagggagtgggaggacctggccacaaagcaagagtgttggctgaggcaatg------------agcaaagtaaac------------------------aatacaaacataatgatgcaaaga---agcaat---tgtaaaggc---cctaaa---agaactattaaatgcttcaactgtggcaaggaagggcacttagccagaaattgcagggctcctaggaaaaaaggctgttggaaatgtggaaaagaaggacaccaagtgaaagactgtact---------gag---aggcaggctaattttttagggaaaatttgg---cct---tcccacagg---------ggg---aggccaggaaatcttcttcagaac------------------------------agaaca------gagccaacagcc---------------------------------------------------ccaccagaa---gagagcttcaggtttggg---------------gaagagacaacaactccctct------------------------cggaagcaggagacg------------------------atagacaag---------------------gaactg------------ccc---tta---acttccctcaaatcactctttggcagcgaccccttgtcaacataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,11fw,12rev","1fw,11fw","4rev,12rev",4,2,2
"U46016",">Ref.C.ET.86.ETH2220.U46016","Ref","C","ET","86","ETH2220","U46016",12,2013,1,30,1486,1515,"atgggtgcgagagcgtcaatattaagaggc","ctctttggcaacgaccacttgttacaataa",1,30,1,30,1,30,1984,2013,1486,1515,1984,2013,"atgggtgcgagagcgtcaatattaagaggcgaaaaattagatgcctgggaaaaaattaagttaaggccagggggaaagaaacactatatgctgaaacacctagtctgggcaaacagggagctggaaaaatttgcacttaaccctgaccttttagatacatcagcaggctgtaaacaaataattaaacagctacaaccagctcttcagacaggaacagaggaacttaaatcattatttaatacagtggcaactctctattgtgtacatcaaaagatagagataaaagacaccaaggaagccttagacaagatagaggaagaacaaaacgaaagtcagcaaaaaacacagcaggcaggagcagctgacagaggaaaggacagtcaaaattatcctatagtgcagaatatgcaggggcaaatggtacatcagcccatatcagctagaactttgaatgcatgggtaaaagtagtagaggaaaaggctttcagcccagaggtaatacccatgtttacagctttatcagaaggagccaccccacaagatttaaacaccatgctaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaggctgcagaatgggacaggttacatccagtgcatgcagggcctgttgcaccaggccaaatgagagacccaaggggaagtgacatagcaggaacaactagtacccttcaggaacaaatagcatggatgacagggaacccacctgttccagtgggagacatctataaaagatggataatcctggggctaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaaggaccaaaggaaccttttagagactatgtagaccggttctttaaaaccttaagagctgaacaagctacacaagatgtaaaaaattggatgacagacaccttgttggtccaaaatgcgaacccagattgtaaaaccattttaagagcattagggccaggggcttcattagaagaaatgatgacagcatgtcagggagtgggaggacctgcccacaaagcaagagtgttggctgaggcaatgagccaagtaaacaatacaaccataatgatgcagaaaagcaattttaagggccctaaaagagcaattaaatgtttcaactgtggcaaggaagggcacctagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtaccgagagacaggctaattttttagggagactttggccttccaacaagggaaggccagggaatttccttcagagcagaccagagccaacagccccaccagagagtctcagaccagagccaacagccccaccaccagagagcttcaggttcgaggaagcaacaccttctccgaagcaggagctgaaagacagggaagccttaacttccctcaaatcactctttggcaacgaccacttgttacaataa","atgggtgcgagagcgtcaatattaagaggcgaaaaattagatgcctgggaaaaaattaagttaaggccagggggaaagaaacactatatgctgaaacacctagtctgggcaaacagggagctggaaaaatttgcacttaaccctgaccttttagatacatcagcaggctgtaaacaaataattaaacagctacaaccagctcttcagacaggaacagaggaacttaaatcattatttaatacagtggcaactctctattgtgtacatcaaaagatagagataaaagacaccaaggaagccttagacaagatagaggaagaacaa------------aac---------------------gaa---------------agtcag------caaaaa---------------------------------acacagcaggcaggagca------------------------------gctgacagagga---------------------------------------------------------------------------------------------------aag------------------gacagtcaaaattatcctatagtgcagaatatgcaggggcaaatggtacatcagcccatatcagctagaactttgaatgcatgggtaaaagtagtagag---gaaaaggctttcagcccagaggtaatacccatgtttacagctttatcagaaggagccaccccacaagatttaaacaccatgctaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaggctgcagaatgggacaggttacatccagtgcatgcagggcctgttgcaccaggccaaatgagagacccaaggggaagtgacatagcaggaacaactagtacccttcaggaacaaatagcatggatgaca---------gggaacccacctgtt---ccagtgggagacatctataaaagatggataatcctggggctaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaaggaccaaaggaaccttttagagactatgtagaccggttctttaaaaccttaagagctgaacaagctacacaagatgtaaaaaattggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaaaaccattttaagagcattagggccaggggcttcattagaagaaatgatgacagcatgtcagggagtgggaggacctgcccacaaagcaagagtgttggctgaggcaatg------------agccaagtaaac------------------------aatacaaccataatgatgcagaaa---agcaat---tttaagggc---cctaaa---agagcaattaaatgtttcaactgtggcaaggaagggcacctagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtacc---------gag---agacaggctaattttttagggagactttgg---cct---tccaacaag---------gga---aggccagggaatttccttcagagc------------------------------agacca------gagccaacagcc---ccaccagagagtct----------cagaccagagccaac---agcc--ccaccacca---gagagcttcaggttcgag---------------gaa---gca---acaccttct------------------------ccgaagcaggagctg------------------------aaagacagg---------------------gaa---------------gcc---tta---acttccctcaaatcactctttggcaacgaccacttgttacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,11fw,12rev","1fw,11fw","2rev,4rev,12rev",5,2,3
"AF067155",">Ref.C.IN.95.95IN21068.AF067155","Ref","C","IN","95","95IN21068","AF067155",13,2013,1,30,1447,1476,"atgggtgcgagagcgtcaatattaagaggg","ctctttggcagcgaccccttgtctcaataa",1,30,1,30,1,30,1984,2013,1447,1476,1984,2013,"atgggtgcgagagcgtcaatattaagagggggaaaattagataaatgggaaaaaattaggttaaggccagggggaaagaaacgctatatgctaaaacacctagtatgggcaagcagggagctggacagatttgcagttaaccctggccttttagagacagcagaaggctgtaaacaaataataaaacagctacaaccagctcttcagacaggaacagaggaacttagatcattattcaacacagtagcaactctctattgtgtacatgcagggatagaagtacgagacaccaaagaagccttagacaagatagaagaagaacaaaacaaaattaagcaaaaaacacagcaggcaaaagaggatgacgggaaggtcagtcaaaattatcctatagtgcagaatctccaagggcaaatggtacaccaagccatatcacctagaactttgaatgcatgggtaaaagtaatagaggaaaaggcttttagcccagaggtaatacccatgtttacagcattatcagaaggagccaccccacaagatttaaataccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaagaggctgcagaatgggatagattacatccagtacctgcagggcctattgcaccaggccaactgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcatggatgacgaataacccacctgttccagtgggagacatctataaaagatggataattctggggttaaataaaatagtaagaatgtatagccctgtgagcattttggacataagacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagctgaacaagctacacaagatgtaaaaaattggatgacagaaaccttgttggtccaaaatgcgaatccagattgtaagaccattttaagagcattaggaccaggggcttcattagaagagatgatgacagcatgtcagggagtgggaggacctagccacaaagcaagagtgttggctgaggcaatgagccaaacaaacagtgccatactgatgcaaagaagcaattttaaaggctctaaaagaattgttaaatgtttcaactgtggcaaggaagggcacctagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtactgaaaggcaggctaattttttagggaaaatttggccttcccacaaggggaggccagggaatttcctccagagtagaccagagccaacagctccaccagcagagagcttcaggttcgaggagacaaccccagctccgaagcaggagccgaaagacagggaacctttaacttccctcagatcactctttggcagcgaccccttgtctcaataa","atgggtgcgagagcgtcaatattaagagggggaaaattagataaatgggaaaaaattaggttaaggccagggggaaagaaacgctatatgctaaaacacctagtatgggcaagcagggagctggacagatttgcagttaaccctggccttttagagacagcagaaggctgtaaacaaataataaaacagctacaaccagctcttcagacaggaacagaggaacttagatcattattcaacacagtagcaactctctattgtgtacatgcagggatagaagtacgagacaccaaagaagccttagacaagatagaagaagaacaa------------aac---------------------aaa---------------attaag------caaaaa---------------------------------acacagcaggcaaaagag------------------------------gatgac---ggg---------------------------------------------------------------------------------------------------aag------------------gtcagtcaaaattatcctatagtgcagaatctccaagggcaaatggtacaccaagccatatcacctagaactttgaatgcatgggtaaaagtaatagag---gaaaaggcttttagcccagaggtaatacccatgtttacagcattatcagaaggagccaccccacaagatttaaataccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaagaggctgcagaatgggatagattacatccagtacctgcagggcctattgcaccaggccaactgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcatggatgacg---------aataacccacctgtt---ccagtgggagacatctataaaagatggataattctggggttaaataaaatagtaagaatgtatagccctgtgagcattttggacataagacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagctgaacaagctacacaagatgtaaaaaattggatgacagaaaccttgttggtc---caaaatgcgaatccagattgtaagaccattttaagagcattaggaccaggggcttcattagaagagatgatgacagcatgtcagggagtgggaggacctagccacaaagcaagagtgttggctgaggcaatg------------agccaaacaaac---------------------------agtgccatactgatgcaaaga---agcaat---tttaaaggc---tctaaa---agaattgttaaatgtttcaactgtggcaaggaagggcacctagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtact---------gaa---aggcaggctaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggccagggaatttcctccagagt------------------------------agacca------gagccaacagct---------------------------------------------------ccaccagca---gagagcttcaggttcgag---------------gag---aca---accccagct------------------------ccgaagcaggagccg------------------------aaagacagg---------------------gaa---------------cct---tta---acttccctcagatcactctttggcagcgaccccttgtctcaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,5fw,7rev,11fw,12rev","1fw,5fw,11fw","4rev,7rev,12rev",6,3,3
"AY772699",">Ref.C.ZA.04.04ZASK146.AY772699","Ref","C","ZA","04","04ZASK146","AY772699",14,2013,1,30,1450,1479,"atgggtgcgagagcgtcagtattaagaggc","ctctttggcagcgaccccttgtctcaataa",1,30,1,30,1,30,1984,2013,1450,1479,1984,2013,"atgggtgcgagagcgtcagtattaagaggcgaaaaattagatacatgggaaaaaattaggttaaggccagggggaaagaaacactatatgctaaaacacatagtatgggcaagcagggagctggaaagatttgcactcaaccctggccttttagaaacatcagaaggctgtaaacaaatattggcacaaatacaaccagctattcagacaggaacagaggaacttaaatcattattcaacacaatagcagttctctattgtgtacataaaaagatagatgtaagagacaccaaggaagccttagacaagatagaggaagagcaaaacaaaagtcagcaaaaaacacagcaggcaaaagcggctgacgaaaaggtcagtcaaaattttcctatagtacagaatcttcaagggcaaatggtacatcaacccctatcacctagaaccttgaatgcatgggtaaaagtaatagaggagaagggttttaacccagaggtaatacccatgtttacagcattatcagagggagccaccccacaagatttgaacaccatgctaaatacggtggggggacatcaagcagccatgcagatgttaaaagataccatcaatgaagaggctgcagaatgggatagattacatccagtacatgcagggcctgtcgcaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtaaccttcaggaacaagtagcatggatgacaagtaacccacctattccagtgggagacatctataaaagatggataattctgggattaaataaaatagtgaggatgtatagcccggtcagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagatcggttctttaaaactttaagagctgaacaagctacacaagaggtaaaaaattggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccattttaagagcattaggaccaggggctacattagaagaaatgatggcagcatgtcaaggggtgggaggacctggccacaaggcaagagtgttggctgaggcaatgagccaaataaacaatggaaacataatgatgcagagaagtaattttaaaggccctaaaagaattgttaaatgttttaactgtggcaaggggaggcacatagccaaaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtactgaaaggcaggctaattttttagggaaaatttggccttcccagaaggggaggccagggaattttctccagaacagactagagccaacagccccaccagcagagagcttcaggttcgaggagacgacccctgctccgaaacaggagctgaaagacagggaacctttaacttccctcagatcactctttggcagcgaccccttgtctcaataa","atgggtgcgagagcgtcagtattaagaggcgaaaaattagatacatgggaaaaaattaggttaaggccagggggaaagaaacactatatgctaaaacacatagtatgggcaagcagggagctggaaagatttgcactcaaccctggccttttagaaacatcagaaggctgtaaacaaatattggcacaaatacaaccagctattcagacaggaacagaggaacttaaatcattattcaacacaatagcagttctctattgtgtacataaaaagatagatgtaagagacaccaaggaagccttagacaagatagaggaagagcaa------------aac---------------------aaa---------------agtcag------caaaaa---------------------------------acacagcaggcaaaagcg------------------------------gctgac---gaa---------------------------------------------------------------------------------------------------aag------------------gtcagtcaaaattttcctatagtacagaatcttcaagggcaaatggtacatcaacccctatcacctagaaccttgaatgcatgggtaaaagtaatagag---gagaagggttttaacccagaggtaatacccatgtttacagcattatcagagggagccaccccacaagatttgaacaccatgctaaatacggtggggggacatcaagcagccatgcagatgttaaaagataccatcaatgaagaggctgcagaatgggatagattacatccagtacatgcagggcctgtcgcaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtaaccttcaggaacaagtagcatggatgaca---------agtaacccacctatt---ccagtgggagacatctataaaagatggataattctgggattaaataaaatagtgaggatgtatagcccggtcagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagatcggttctttaaaactttaagagctgaacaagctacacaagaggtaaaaaattggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccattttaagagcattaggaccaggggctacattagaagaaatgatggcagcatgtcaaggggtgggaggacctggccacaaggcaagagtgttggctgaggcaatg------------agccaaataaac------------------------aatggaaacataatgatgcagaga---agtaat---tttaaaggc---cctaaa---agaattgttaaatgttttaactgtggcaaggggaggcacatagccaaaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtact---------gaa---aggcaggctaattttttagggaaaatttgg---cct---tcccagaag---------ggg---aggccagggaattttctccagaac------------------------------agacta------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcaggttcgag---------------gag---acg---acccctgct------------------------ccgaaacaggagctg------------------------aaagacagg---------------------gaa---------------cct---tta---acttccctcagatcactctttggcagcgaccccttgtctcaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,7rev,10rev,11fw,12rev","1fw,11fw","7rev,10rev,12rev",5,2,3
"K03454",">Ref.D.CD.83.ELI.K03454","Ref","D","CD","83","ELI","K03454",15,2013,1,30,1474,1503,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgaccccttgtcgcaataa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagataaatgggaaaaaattcggttacggccaggaggaaagaaaaaatatagactaaaacatatagtatgggcaagcagggagctagaacgatatgcacttaatcctggccttttagaaacatcagaaggctgtaaacaaataatagggcagctacaaccagctattcagacaggaacagaagaacttagatcattatataatacagtagcaaccctctattgtgtacataaaggaatagatgtaaaagacaccaaggaagctttagaaaagatggaggaagagcaaaacaaaagtaagaaaaaggcacagcaagcagcagctgacacaggaaacaacagccaggtcagccaaaattatcctatagtgcagaacctacaggggcaaatggtacatcaggccatatcacctagaactttgaacgcatgggtaaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgctaaaagagaccatcaatgaagaagctgcagaatgggataggttacatccagtgcatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcatggatgacaagtaacccacctatcccagtaggagaaatctataaaagatggataattgtgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacagggaccaaaggaaccttttagagactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggatgtaaaaaattggatgacagaaaccttgttggtccaaaatgcaaacccagattgcaagactatcttaaaagcattgggaccacaggctacactagaagaaatgatgacagcatgtcagggagtgggggggcccagccataaagcaagagttctggctgaggcaatgagccaagcaacaaattcagttactacagcaatgatgcagagaggcaattttaagggcccaagaaaaattattaagtgtttcaattgtggcaaagaagggcacatagcaaaaaattgcagggcccctaggaaaaagggctgttggagatgtggaaaggaaggacaccaactaaaagattgcactgagagacaggctaattttttagggagaatttggccttcccacaagggaaggccggggaactttctccaaagcagaccagagccaacagccccaccagcagagagcttcgggtttggggaagagataaccccctctcaaaaacaggagcagaaagacaaggaactgtatcctttaacttccctcaaatcactctttggcaacgaccccttgtcgcaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagataaatgggaaaaaattcggttacggccaggaggaaagaaaaaatatagactaaaacatatagtatgggcaagcagggagctagaacgatatgcacttaatcctggccttttagaaacatcagaaggctgtaaacaaataatagggcagctacaaccagctattcagacaggaacagaagaacttagatcattatataatacagtagcaaccctctattgtgtacataaaggaatagatgtaaaagacaccaaggaagctttagaaaagatggaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaaag---------------------------------gcacagcaagcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------aacaacagccag------------------gtcagccaaaattatcctatagtgcagaacctacaggggcaaatggtacatcaggccatatcacctagaactttgaacgcatgggtaaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgctaaaagagaccatcaatgaagaagctgcagaatgggataggttacatccagtgcatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcatggatgaca---------agtaacccacctatc---ccagtaggagaaatctataaaagatggataattgtgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacagggaccaaaggaaccttttagagactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggatgtaaaaaattggatgacagaaaccttgttggtc---caaaatgcaaacccagattgcaagactatcttaaaagcattgggaccacaggctacactagaagaaatgatgacagcatgtcagggagtgggggggcccagccataaagcaagagttctggctgaggcaatg------------agccaagcaacaaattca------------------gttactacagcaatgatgcagaga---ggcaat---tttaagggc---ccaaga---aaaattattaagtgtttcaattgtggcaaagaagggcacatagcaaaaaattgcagggcccctaggaaaaagggctgttggagatgtggaaaggaaggacaccaactaaaagattgcact---------gag---agacaggctaattttttagggagaatttgg---cct---tcccacaag---------gga---aggccggggaactttctccaaagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggtttggg---------------gaagagata---accccctct------------------------caaaaacaggagcag------------------------aaagacaag---------------------gaactgtat---------cct---tta---acttccctcaaatcactctttggcaacgaccccttgtcgcaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"AY371157",">Ref.D.CM.01.01CM_4412HAL.AY371157","Ref","D","CM","01","01CM_4412HAL","AY371157",16,2013,0,23,1477,1506,"gcgagagcgtcaatattaagcgg","ctctttggcaacgaccccttgtcacaataa",1,30,0,23,1,30,1984,2013,1477,1506,1984,2013,"gcgagagcgtcaatattaagcgggggaaaattggatgcatgggaaaaaattcggttacggccagggggaagcaaaaagtataggctaaaacatctaatatgggcaagcaatgagctagaacgatttgcacttaatcctggccttttagagacatcagatggctgtaaacaaatactaggccagctacaaccagctcttaaaacaggaacagaagaacttagatcattatttaatgcagtagcagtactctattgtgtacatgaaaggatagaggtaaaggacaccaaggaagccttagacaagatagaggaagaacaaaacaaaagtaagaaaaaagcacagcaagcagcagctgacacaggggacaacaaacaggtcagccaaaattatcctatagtgcagaacttacaggggcaaatggtacaccaagccctatcacccagaaccttgaacgcatgggtaaaagtaatagaggaaaaggctttcaacccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaggatttaaataccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggacaggctacatccagtgcaagcagggcctgttgcaccaggccagatgagagaaccaaggggaagtgatattgcaggaactactagtacccttcaggaacaaatagggtggatgacaagtaatccaccaatcccagtaggggaaatctataaaagatggataatcttgggattgaataaaatagtaagaatgtatagccctgtcagtattttggatataagacaaggaccaaaagaaccctttagagactatgtagaccggttctataaaactctaagagccgagcaagctacacaggaagtaaaaaattggatgacagaaaccttgttggttcaaaatgcaaacccagactgtaaaactatcttaaaggcgttggggccaggggctacactagaagaaatgatgacagcatgtcagggagtgggagggcccggccataaagcaagagttttggctgaggcaatgagccaagcaacagcaggtatgaatgctgcaataatgatgcagaggggcaattttaagggcccaaagagaattgttaagtgtttcaactgtggcaaagaagggcacatagcaaaaaattgcagggcccctaggaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagattgcacagaaagacaggctaattttttagggaaaatttggccttccaacaagggaaggccagggaactttcttcagagcagaccagagccaacagccccaccagcagagagcttcgggttcggggaggagatagccccctctcagaaacaggagcagaaagacaaagaccaggaactgtatcctttaacttccctcaaatcactctttggcaacgaccccttgtcacaataa","------gcgagagcgtcaatattaagcgggggaaaattggatgcatgggaaaaaattcggttacggccagggggaagcaaaaagtataggctaaaacatctaatatgggcaagcaatgagctagaacgatttgcacttaatcctggccttttagagacatcagatggctgtaaacaaatactaggccagctacaaccagctcttaaaacaggaacagaagaacttagatcattatttaatgcagtagcagtactctattgtgtacatgaaaggatagaggtaaaggacaccaaggaagccttagacaagatagaggaagaacaa------------aac---------------------aaa---------------agtaag------aaaaaa---------------------------------gcacagcaagcagcagct---------------------------------gacacaggg------------------------------------------------------------------------------------------gacaacaaacag------------------gtcagccaaaattatcctatagtgcagaacttacaggggcaaatggtacaccaagccctatcacccagaaccttgaacgcatgggtaaaagtaatagag---gaaaaggctttcaacccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaggatttaaataccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggacaggctacatccagtgcaagcagggcctgttgcaccaggccagatgagagaaccaaggggaagtgatattgcaggaactactagtacccttcaggaacaaatagggtggatgaca---------agtaatccaccaatc---ccagtaggggaaatctataaaagatggataatcttgggattgaataaaatagtaagaatgtatagccctgtcagtattttggatataagacaaggaccaaaagaaccctttagagactatgtagaccggttctataaaactctaagagccgagcaagctacacaggaagtaaaaaattggatgacagaaaccttgttggtt---caaaatgcaaacccagactgtaaaactatcttaaaggcgttggggccaggggctacactagaagaaatgatgacagcatgtcagggagtgggagggcccggccataaagcaagagttttggctgaggcaatg------------agccaagcaacagcaggt------------atg---aatgctgcaataatgatgcagagg---ggcaat---tttaagggc---ccaaag---agaattgttaagtgtttcaactgtggcaaagaagggcacatagcaaaaaattgcagggcccctaggaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagattgcaca---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------gga---aggccagggaactttcttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcggg---------------gaggagata---gccccctct------------------------cagaaacaggagcag------------------------aaagacaaagaccag---------------gaactgtat---------cct---tta---acttccctcaaatcactctttggcaacgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","2rev,7rev,10rev,11fw,12rev","11fw","2rev,7rev,10rev,12rev",5,1,4
"AY253311",">Ref.D.TZ.01.A280.AY253311","Ref","D","TZ","01","A280","AY253311",17,2013,0,23,1464,1493,"gcgagagcgtcagtattaagcgg","ctctttggcaacgaccccttgtcacaataa",1,30,0,23,1,30,1984,2013,1464,1493,1984,2013,"gcgagagcgtcagtattaagcgggggacaattagatgcatgggaaaaaattcggttaaggccagggggaaagaaaaaatatcaactaaaacatatagtatgggcaagcagggagttagaacgatttgcacttaatcctggccttttagagacatccgaaggctgtaaacaaatctacaaccagctattcagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtgcatagaaagatagaggtaaaagacaccaaggaagctttagaaaaattagaggaagagcaaaccaaaagtaagaaaaaggcacagcaagcaacagctgacacaggaagcagcagccaggtcagccaaaattatcctatagtgcaaaacctacaggggcaaatggtacaccaggccatatcacctagaaccttgaacgcatgggtaaaagtaatagaagagaaggctttcagcccagaagtgatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacacaatgctaaacacagtggggggacatcaagcagctatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggataggctacatccagtgcatgcagggcctattgcaccaggacagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcatggatgacaaataatccacctgtcccagtaggagaaatatataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaaggaccaaaggagccctttagggactatgtagatcggttctataaaactctaagagccgagcaagcttcacaagatgtaaaaaattggatgactgaaaccttgttggtccaaaatgcgaacccagattgtaaaactatcttaaaagcattgggaccagcggctacattagaagaaatgatgacagcatgtcagggagtggggggacccagtcataaggcaagagttctagctgaggcaatgagccaagcaacaaatgtaaatgctgccataatgatgcagagaggtaattttaagggcccaaggaaaatcattaagtgtttcaactgtggcaaagaaggacacatagcaaaaaattgcagggccccaagaaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagattgcactgaaagacaggctaattttttagggaaaatttggccttcccacaaaggaaggccagggaacttccttcagagcagaccagagccaacagccccaccagcagagatcttcgggtttggggaggagataaaaccctctcagaaacaggagcagaaagacaaggacaaggaactgtatccttcagcttccctcaaatcactctttggcaacgaccccttgtcacaataa","------gcgagagcgtcagtattaagcgggggacaattagatgcatgggaaaaaattcggttaaggccagggggaaagaaaaaatatcaactaaaacatatagtatgggcaagcagggagttagaacgatttgcacttaatcctggccttttagagacatccgaaggctgtaaacaaat----------ctacaaccagctattcagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtgcatagaaagatagaggtaaaagacaccaaggaagctttagaaaaattagaggaagagcaa------------acc---------------------aaa---------------agtaag------aaaaag---------------------------------gcacagcaagcaacagct---------------------------------gacacagga------------------------------------------------------------------------------------------agcagcagccag------------------gtcagccaaaattatcctatagtgcaaaacctacaggggcaaatggtacaccaggccatatcacctagaaccttgaacgcatgggtaaaagtaatagaa---gagaaggctttcagcccagaagtgatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacacaatgctaaacacagtggggggacatcaagcagctatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggataggctacatccagtgcatgcagggcctattgcaccaggacagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcatggatgaca---------aataatccacctgtc---ccagtaggagaaatatataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaaggaccaaaggagccctttagggactatgtagatcggttctataaaactctaagagccgagcaagcttcacaagatgtaaaaaattggatgactgaaaccttgttggtc---caaaatgcgaacccagattgtaaaactatcttaaaagcattgggaccagcggctacattagaagaaatgatgacagcatgtcagggagtggggggacccagtcataaggcaagagttctagctgaggcaatg------------agccaagcaacaaatgta------------------aatgctgccataatgatgcagaga---ggtaat---tttaagggc---ccaagg---aaaatcattaagtgtttcaactgtggcaaagaaggacacatagcaaaaaattgcagggccccaagaaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagattgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tcccacaaa---------gga---aggccagggaacttccttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagatcttcgggtttggg---------------gaggagata---aaaccctct------------------------cagaaacaggagcag------------------------aaagacaag------------gacaag---gaactgtat---------cct---tca---gcttccctcaaatcactctttggcaacgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","2rev,4rev,7rev,10rev,11fw,12rev","11fw","2rev,4rev,7rev,10rev,12rev",6,1,5
"U88824",">Ref.D.UG.94.94UG114.U88824","Ref","D","UG","94","94UG114","U88824",18,2013,1,30,1480,1509,"atgggtgcgagagcgtcagtattaagcgga","ctctttggcaacgacccgttgtcacagtaa",1,30,1,30,1,30,1984,2013,1480,1509,1984,2013,"atgggtgcgagagcgtcagtattaagcggaggaaaattagatgaatgggaaaaaattcggttacggccagggggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctagaacgattcgcacttaatcctggccttttagaaacatcagaaggctgtagacaaataataagacagctacaaccatctattcagacaggatcagaggaaattaaatcattatataatacagtggtaaccctctattgtgtacatgagaggataaaggtagcaagcaccaaggaagctttagacaagatagaggaagaacaagccaaaagtaagaaaaaagcacagcaagcaacagctgacacaagaaacagcagccaggtcagccaaaattatcctatagtgcaaaacctacaggggcaaatggtacaccatcccctatcacctagaactttgaacgcatgggtaaaagtaatagaggagaaggctttcaacccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaggataccatcaatgaggaagctgcagaatgggataggctacatccagtgcatgcagggcctgttgcaccaggccaattgagagaaccaaggggaagtgatatagcaggaactactagtaaccttcaggaacaaataggatggatgacaagcaatccacctatcccagtaggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaaggaccaaaggaaccctttagagactatgtagatcggttctataaaactctaagagccgagcaagcttcacaggatgtaaaaaattggatgactgaaaccttgttggtccaaaatgcgaacccagattgtaaaactatcttaaaagcattgggaccagcggctacattagaagaaatgatgacagcatgtcagggagtggggggacccagtcataaagcaagagttttggctgaggcaatgagccaagcaacaaatgcaaatactgctataatgatgcagagaggcaattttaagggcccaaagaaaatcattaagtgtttcaactgtggcaaagaagggcacacggcaaaaaattgcagggctcctagaaaaaagggctgttggaaatgtggaagggaaggacaccaaatgaaagattgcactgaaagacaggctaattttttagggaaaatttggccttcccacaatggaaggccagggaatttccttcagagcagacccccagcagagccaacagccccaccagcagagatcttcggattaggggaggagataacacctcctcagaaacaggagcagaaagacaaggaactgtatcctttaacctccctcaaatcactctttggcaacgacccgttgtcacagtaa","atgggtgcgagagcgtcagtattaagcggaggaaaattagatgaatgggaaaaaattcggttacggccagggggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctagaacgattcgcacttaatcctggccttttagaaacatcagaaggctgtagacaaataataagacagctacaaccatctattcagacaggatcagaggaaattaaatcattatataatacagtggtaaccctctattgtgtacatgagaggataaaggtagcaagcaccaaggaagctttagacaagatagaggaagaacaa------------gcc---------------------aaa---------------agtaag------aaaaaa---------------------------------gcacagcaagcaacagct---------------------------------gacacaaga------------------------------------------------------------------------------------------aacagcagccag------------------gtcagccaaaattatcctatagtgcaaaacctacaggggcaaatggtacaccatcccctatcacctagaactttgaacgcatgggtaaaagtaatagag---gagaaggctttcaacccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaggataccatcaatgaggaagctgcagaatgggataggctacatccagtgcatgcagggcctgttgcaccaggccaattgagagaaccaaggggaagtgatatagcaggaactactagtaaccttcaggaacaaataggatggatgaca---------agcaatccacctatc---ccagtaggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaaggaccaaaggaaccctttagagactatgtagatcggttctataaaactctaagagccgagcaagcttcacaggatgtaaaaaattggatgactgaaaccttgttggtc---caaaatgcgaacccagattgtaaaactatcttaaaagcattgggaccagcggctacattagaagaaatgatgacagcatgtcagggagtggggggacccagtcataaagcaagagttttggctgaggcaatg------------agccaagcaacaaatgca------------------aatactgctataatgatgcagaga---ggcaat---tttaagggc---ccaaag---aaaatcattaagtgtttcaactgtggcaaagaagggcacacggcaaaaaattgcagggctcctagaaaaaagggctgttggaaatgtggaagggaaggacaccaaatgaaagattgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tcccacaat---------gga---aggccagggaatttccttcagagc------------------------------agacccccagcagagccaacagcc---------------------------------------------------ccaccagca---gagatcttcggattaggg---------------gaggagata---acacctcct------------------------cagaaacaggagcag------------------------aaagacaag---------------------gaactgtat---------cct---tta---acctccctcaaatcactctttggcaacgacccgttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"AF077336",">Ref.F1.BE.93.VI850.AF077336","Ref","F1","BE","93","VI850","AF077336",19,2013,1,30,1456,1485,"atgggtgcgagagcgtcaatattaagcggg","ctctttggcaacgacccttagtcacaataa",1,30,1,30,1,30,1984,2013,1456,1485,1984,2013,"atgggtgcgagagcgtcaatattaagcgggggaaaattagatgaatgggaaaaaattcagttaaggccggggggaaagaaaagatataaaatgaaacatctaatatgggcaagcagggagctagaacgatttgcacttgatcctggccttctagaaacatcagaaggctgtcaaaaaataataagacagctacaaccatcccttcagacaggatcagaagagcttaagtcattatttaatacagtagcagtcctctattatgtacatcaaagggcaggggtaacagacaccaaggaagctttagacaagctagaggaagaacaaaacaaaagtcagcaaaagacacagcaagcggcagctgacaaaggggtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacaccagtctctatcacctagaactttaaatgcatgggtaaaggtgatagaagagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactcccacagatttaaacaccatgctaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcagggcctgccccaccaggccagatgagggaacctagggggagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgacgggcaacccacctgtcccagtgggagacatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagtcctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacagattctttaaagtcctaagagctgagcaagcttcacaggacgtaaagggttggatgacagacacattgttggtccaaaatgcgaacccagattgtaagaccattttaaaagcattgggaacaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagagttttggccgaggcaatgagtcaagcaaattcagccataatgatgcagaaaagtaattttaagggccaaagaagagttgttaaatgttttaattgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccaacaaggggaggcccggaaatttccttcagagcagaccagagccaacagccccaccagcagagagcttcgggttcagagaggagataaccccctctccgaagcaggagcagaaagacggggaactgtaccctcccttagcttccctcaaatcactctttggcaacgacccttagtcacaataa","atgggtgcgagagcgtcaatattaagcgggggaaaattagatgaatgggaaaaaattcagttaaggccggggggaaagaaaagatataaaatgaaacatctaatatgggcaagcagggagctagaacgatttgcacttgatcctggccttctagaaacatcagaaggctgtcaaaaaataataagacagctacaaccatcccttcagacaggatcagaagagcttaagtcattatttaatacagtagcagtcctctattatgtacatcaaagggcaggggtaacagacaccaaggaagctttagacaagctagaggaagaacaa------------aac---------------------aaa---------------agtcag------caaaag---------------------------------acacagcaagcggcagct---------------------------------gacaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacaccagtctctatcacctagaactttaaatgcatgggtaaaggtgatagaa---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactcccacagatttaaacaccatgctaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcagggcctgccccaccaggccagatgagggaacctagggggagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgacg---------ggcaacccacctgtc---ccagtgggagacatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagtcctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacagattctttaaagtcctaagagctgagcaagcttcacaggacgtaaagggttggatgacagacacattgttggtc---caaaatgcgaacccagattgtaagaccattttaaaagcattgggaacaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagagttttggccgaggcaatg------------agtcaagcaaat---------------------------tcagccataatgatgcagaaa---agtaat---tttaagggc---caaaga---agagttgttaaatgttttaattgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggcccggaaatttccttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcaga---------------gaggagata---accccctct------------------------ccgaagcaggagcag------------------------aaagacggg---------------------gaactgtac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccttagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,9fw,11fw,12rev","1fw,9fw,11fw","4rev,7rev,12rev",6,3,3
"AF005494",">Ref.F1.BR.93.93BR020_1.AF005494","Ref","F1","BR","93","93BR020_1","AF005494",20,2013,1,30,1459,1488,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccctagtcacaataa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcttgggaaaaaattcggttaaggccggggggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctagaacgatttgcacttgatccaggccttctagaaacatcagaaggctgtcgaaaaataataggacagttacaaccatcccttcagacaggatcagaagagctcaaatcattatataatacaatagcagtcctctattatgtacatcaaaaggtagaggtaaaagacaccaaggaggctttagagaagctagaggaagaacaaaacaaaggtcggcaaaagacacagcaagcgactgctgaaaaaggggtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacaccagtctttatcacctagaactttaaatgcatgggtaaaggtgatagaagagaaggcttttagtccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaggctgcagaatgggacagattacatccaacacaggcaggacccatccccccaggtcagataagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgacaggcaacccacctgtcccagtgggagaaatgtataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcggcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaagctacacaggaagtaaagggttggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaggaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagagttttggctgaggcaatgagccaagcaacaaatacagctataatgatgcagaaaagtaactttaagggccaaagaagaattgttaaatgctttaattgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaagtgtggaagagagggacaccaaatgaaggactgcactgagagacaggctaattttttagggaaaatttggccttccaacaaggggaggcccggaaacttcatccagaacaggccagagccgtcagccccgccagcagagagcttcaggttcggggaggagacaaccccatctccgaagcaggagcagaaagacgagggactgtaccctcccttagcttccctcaaatcactctttggcaacgacccctagtcacaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcttgggaaaaaattcggttaaggccggggggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctagaacgatttgcacttgatccaggccttctagaaacatcagaaggctgtcgaaaaataataggacagttacaaccatcccttcagacaggatcagaagagctcaaatcattatataatacaatagcagtcctctattatgtacatcaaaaggtagaggtaaaagacaccaaggaggctttagagaagctagaggaagaacaa------------aac---------------------aaa---------------ggtcgg------caaaag---------------------------------acacagcaagcgactgct---------------------------------gaaaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacaccagtctttatcacctagaactttaaatgcatgggtaaaggtgatagaa---gagaaggcttttagtccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaggctgcagaatgggacagattacatccaacacaggcaggacccatccccccaggtcagataagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgaca---------ggcaacccacctgtc---ccagtgggagaaatgtataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcggcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaagctacacaggaagtaaagggttggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaggaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagagttttggctgaggcaatg------------agccaagcaaca------------------------aatacagctataatgatgcagaaa---agtaac---tttaagggc---caaaga---agaattgttaaatgctttaattgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaagtgtggaagagagggacaccaaatgaaggactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggcccggaaacttcatccagaac------------------------------aggcca------gagccgtcagcc---------------------------------------------------ccgccagca---gagagcttcaggttcggg---------------gaggagaca---accccatct------------------------ccgaagcaggagcag------------------------aaagacgag---------------------ggactgtac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccctagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"AF075703",">Ref.F1.FI.93.FIN9363.AF075703","Ref","F1","FI","93","FIN9363","AF075703",21,2013,1,30,1462,1491,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccctagtcacaataa",1,30,1,30,1,30,1984,2013,1462,1491,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaactagatgcatgggaaaaaattcggttaaggccggggggaaagaaacaatatagaataaaacatctagtatgggcaagcagggagctagaacgatttgcaatagatcctggccttctagaaacatcagaaggctgtcaaaaaataatagcacagatacagccatccattcagacaggatcagaagagcttagatcattatataacacaatagcagtcctctattttgtacatcaaaagatagaggtaaaggacaccaaggaagctttagataagctagaggaagaacaaaacaaaagtcagcaaaagacacagcaagcggcagctgcagctgacaaaggggtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacatcaggctatatcacctagaactttaaatgcatgggtaaaggtgatagaagagaaggcttttagcccagaagttatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgctaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccattaatgaggaagctgcagaatgggacagattacatccagtgcatgcaggacctattccaccaggccagatgagggaacctaggggaagcgatatagctggaactactagtacccttcaggaacaaatacaatggatgacaagtaacccacctgtcccagtgggagacatctataaaagatggatcatcctaggattaaataaaatagtaaggatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaagctctaagagctgagcaagctacacaggaagtaaagggttggatgacagacaccttgttggtccaaaatgcgaatccagattgtaagatcattttaaaaggattgggaataggggctacactagaagaaatgatgacagcatgtcggggagtgggaggacctggccataaggcaagaattttggctgaggcaatgagccaagcaaatacaaccataatgatgcagaaaagtaattttaggggccaaagaagaattgttaaatgttttaattgtggcaaagaaggacacatagccagaaattgcagggcccccaggaaaaagggctgttggaaatgtggacaagaagggcaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccaacaaggggaggcccggaaatttccttcagagtagaccagagccaacagccccgccagcagagagcctcgggatcagagaagaggtaactccctctccgaggcaggagcagaaagaagagggacagtaccctcccttagcttccctcaaatcactctttggcaacgacccctagtcacaataa","atgggtgcgagagcgtcagtattaagcgggggaaaactagatgcatgggaaaaaattcggttaaggccggggggaaagaaacaatatagaataaaacatctagtatgggcaagcagggagctagaacgatttgcaatagatcctggccttctagaaacatcagaaggctgtcaaaaaataatagcacagatacagccatccattcagacaggatcagaagagcttagatcattatataacacaatagcagtcctctattttgtacatcaaaagatagaggtaaaggacaccaaggaagctttagataagctagaggaagaacaa------------aac---------------------aaa---------------agtcag------caaaag---------------------------------acacagcaagcggcagct---------------------------gcagctgacaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacatcaggctatatcacctagaactttaaatgcatgggtaaaggtgatagaa---gagaaggcttttagcccagaagttatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgctaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccattaatgaggaagctgcagaatgggacagattacatccagtgcatgcaggacctattccaccaggccagatgagggaacctaggggaagcgatatagctggaactactagtacccttcaggaacaaatacaatggatgaca---------agtaacccacctgtc---ccagtgggagacatctataaaagatggatcatcctaggattaaataaaatagtaaggatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaagctctaagagctgagcaagctacacaggaagtaaagggttggatgacagacaccttgttggtc---caaaatgcgaatccagattgtaagatcattttaaaaggattgggaataggggctacactagaagaaatgatgacagcatgtcggggagtgggaggacctggccataaggcaagaattttggctgaggcaatg------------agccaagcaaat---------------------------acaaccataatgatgcagaaa---agtaat---tttaggggc---caaaga---agaattgttaaatgttttaattgtggcaaagaaggacacatagccagaaattgcagggcccccaggaaaaagggctgttggaaatgtggacaagaagggcaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggcccggaaatttccttcagagt------------------------------agacca------gagccaacagcc---------------------------------------------------ccgccagca---gagagcctcgggatcaga---------------gaagaggta---actccctct------------------------ccgaggcaggagcag------------------------aaagaagag---------------------ggacagtac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccctagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"AJ249238",">Ref.F1.FR.96.96FR_MP411.AJ249238","Ref","F1","FR","96","96FR_MP411","AJ249238",22,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagcggg","ctttttggcagcgacccttagtcaccataa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaagaattcgattaagaccggggggaaagaaaaaatatagaatgaagcatctagtatgggcaagcagggagttagaacgatttgcagttgatcctggacttctagaaacaccagaaggctgtaagcaaataataagacagctacaaccatcccttcagacaggatcagaagagcttagatcattgttcaatacagtagcagttctctattgtgtacatcaaaagatagagataaaggacaccaaggaagctttagagaagttagaggaggaacaaaacaaaggtcagcaaaagacacagcaagcggcagctgacaaaggagtcagtcaaaattaccctatagtacaaaatcttcagggacagatggtacatcagcctatatcacctagaactttaaatgcatgggtaaaagtgatagaagagaaggcttttagcccagaagtaatacccatgttctcagcattatcagaaggggccaccccacaagatttaaacaccatgctaaatacagtgggtggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagcgcatgcagggcctatcctaccaggccagatgagagaacctaggggtagtgacatagctggaactactagtacccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagacatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaggaaccttttagagactatgtggacaggttctttaaaactctaagagctgagcaagcttcacaggaagtaaagaattggatgacagaaagcttgctggtgcaaaattcgaacccagactgtaagaccatcttaaaagcattaggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagggttttggctgaggccatgagccaagcaacaaatgcagctataatgatgcagaaaagtaactataagggcccaagaagatttattaaatgttttaattgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaagaaggacatcaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccaacaaggggaggcccggaaattttcttcagaacaggccagagccaacagccccgccagcggagagcttcgggttcaaagaggaaataaccccctctccgaagcaggagcagaaggacgagggacagggactgtatcctcccttagcctccctcaaatcactttttggcagcgacccttagtcaccataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaagaattcgattaagaccggggggaaagaaaaaatatagaatgaagcatctagtatgggcaagcagggagttagaacgatttgcagttgatcctggacttctagaaacaccagaaggctgtaagcaaataataagacagctacaaccatcccttcagacaggatcagaagagcttagatcattgttcaatacagtagcagttctctattgtgtacatcaaaagatagagataaaggacaccaaggaagctttagagaagttagaggaggaacaa------------aac---------------------aaa---------------ggtcag------caaaag---------------------------------acacagcaagcggcagct---------------------------------gacaaagga------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacaaaatcttcagggacagatggtacatcagcctatatcacctagaactttaaatgcatgggtaaaagtgatagaa---gagaaggcttttagcccagaagtaatacccatgttctcagcattatcagaaggggccaccccacaagatttaaacaccatgctaaatacagtgggtggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagcgcatgcagggcctatcctaccaggccagatgagagaacctaggggtagtgacatagctggaactactagtacccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagacatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaggaaccttttagagactatgtggacaggttctttaaaactctaagagctgagcaagcttcacaggaagtaaagaattggatgacagaaagcttgctggtg---caaaattcgaacccagactgtaagaccatcttaaaagcattaggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagggttttggctgaggccatg------------agccaagcaaca------------------------aatgcagctataatgatgcagaaa---agtaac---tataagggc---ccaaga---agatttattaaatgttttaattgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaagaaggacatcaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggcccggaaattttcttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccgccagcg---gagagcttcgggttcaaa---------------gaggaaata---accccctct------------------------ccgaagcaggagcag------------------------aaggacgag------------ggacag---ggactgtat------cctccc---tta---gcctccctcaaatcactttttggcagcgacccttagtcaccataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,11fw,12rev","1fw,11fw","12rev",3,2,1
"AY371158",">Ref.F2.CM.02.02CM_0016BBY.AY371158","Ref","F2","CM","02","02CM_0016BBY","AY371158",23,2013,0,23,1453,1482,"gcgagagcgtcagtattaagcgg","ctctttggcaacgacccgtagtcacaataa",1,30,0,23,1,30,1984,2013,1453,1482,1984,2013,"gcgagagcgtcagtattaagcgggggaaaattagatgactgggagaaaattcggttaaggccgggagggaagaaaaaatataggctaaaacatatagtatgggcaagcaaggagctagaacgatttgcacttaatcctggccttttagagacaacagaaggctgtaaacaaataataggacaactacaatcatcccttcagacaggatcagaagagattaaatcattatataacacagtagcagtcctctattatgtacatcaaaagatacaaataagagacaccaaggaagctttagataagctacaggaagaacaagacaaatatcagcaaaaaacacaaccagcagcggctgataaaggggtcagtcaaaattaccctatagtacagaatcttcaggggcaaatggtacatcaggctatatcacctagaactctaaatgcatgggtaaaagtaatagaagagaaggctttcagcccagaagtcatacccatgttttcagcattatcagaaggggccaccccacaagatttaaacaccatgctaaacacagtagggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggttacatccagtgcaggcaggacctatcccaccaggtcagataagagaacctaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcatggatgacaagcaacccacctgtcccagtaggagaaatttataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaactctaagagctgagcaagctacacaggaagtaaaaggctggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccattttaaaagcactaggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagaattttggctgaggcaatgagccaagtaacagctacatccgtactgatgcagaaaagcaactttaagggccaaaaaagaattgtcaagtgtttcaactgtggcaaagaaggacatatagctaaaaattgcagggcccctagaaaaaggggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccaacaaagggaggcctgggaatttcattcagagcagaccagagccaacggccccgccagcagagggcttcgggttcggagaagagataactccctccccgaagcaggagcagaaagacaagggactgtatcctcccttgacttccctcaaatcactctttggcaacgacccgtagtcacaataa","------gcgagagcgtcagtattaagcgggggaaaattagatgactgggagaaaattcggttaaggccgggagggaagaaaaaatataggctaaaacatatagtatgggcaagcaaggagctagaacgatttgcacttaatcctggccttttagagacaacagaaggctgtaaacaaataataggacaactacaatcatcccttcagacaggatcagaagagattaaatcattatataacacagtagcagtcctctattatgtacatcaaaagatacaaataagagacaccaaggaagctttagataagctacaggaagaacaa------------gac---------------------aaa---------------tatcag------caaaaa---------------------------------acacaaccagcagcggct---------------------------------gataaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatcttcaggggcaaatggtacatcaggctatatcacctagaactctaaatgcatgggtaaaagtaatagaa---gagaaggctttcagcccagaagtcatacccatgttttcagcattatcagaaggggccaccccacaagatttaaacaccatgctaaacacagtagggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggttacatccagtgcaggcaggacctatcccaccaggtcagataagagaacctaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcatggatgaca---------agcaacccacctgtc---ccagtaggagaaatttataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaactctaagagctgagcaagctacacaggaagtaaaaggctggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccattttaaaagcactaggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagaattttggctgaggcaatg------------agccaagtaaca------------------------gctacatccgtactgatgcagaaa---agcaac---tttaagggc---caaaaa---agaattgtcaagtgtttcaactgtggcaaagaaggacatatagctaaaaattgcagggcccctagaaaaaggggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacaaa---------ggg---aggcctgggaatttcattcagagc------------------------------agacca------gagccaacggcc---------------------------------------------------ccgccagca---gagggcttcgggttcgga---------------gaagagata---actccctcc------------------------ccgaagcaggagcag------------------------aaagacaag---------------------ggactgtat------cctccc---ttg---acttccctcaaatcactctttggcaacgacccgtagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","","","7rev,12rev",0,0,2
"AJ249236",">Ref.F2.CM.95.95CM_MP255.AJ249236","Ref","F2","CM","95","95CM_MP255","AJ249236",24,2013,1,30,1459,1488,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccttagtcgcaataa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaagccggggggaaagaaaagatataggctaaaacatctagtatgggcaagcagggaactagaacgatttgcacttaatcctagccttttagaaacaacagaaggctgtaagaaaataataggacaattacaatcatcccttcagacaggatcagaagagcttaaatcactatacaatgcagtagtagttctctattatgtacatcaaaggatagatgtaagagacaccaaggaagctttagataagctacaggaagaacaagataaaagtcagcaaaaggaacaacaaaaggcggctgacaaagaggtcagtcaaaattaccctatagtgcagaatattcaggggcaaatggtacaccaggctctatcacctagaactttaaatgcatgggtaaaagtaatagaagagaaggctttcagtccagaagtaatacccatgttttcagcattatcagaaggggccaccccacaagatttaaataccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagatactatcaatgaggaggctgcagaatgggacaggttacatccagtgcatgcagggcctatcccaccagggcagatgagagaacctaggggaagtgatatagcaggaactactagtacccttcaggaacaaataacatggatgacaggcaacccacccgtcccagtaggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaactctaagagctgaacaagctacacaggaggtaaaaaactggatgacagaaaccttgttggtccaaaattcgaacccagattgtaagacaattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagaattctggctgaggcaatgagcaaagcaacaagtacagccataatgatgcagaaaagcaactttaagggccaaaaaagaattgttaagtgtttcaactgtggcaaagaaggacatatagctagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcactgaaaggcaggctaattttttagggaaaatttggccttccaacagggggaggccaggaaattttcttcagaacagaccagagccaacagccccgccagcagagaacttcgggttcggagaggggataaccccctccccgaagcaggagcagaaaggcgaggaacaggctcctcccttagtttccctcaaatcactctttggcagcgacccttagtcgcaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaagccggggggaaagaaaagatataggctaaaacatctagtatgggcaagcagggaactagaacgatttgcacttaatcctagccttttagaaacaacagaaggctgtaagaaaataataggacaattacaatcatcccttcagacaggatcagaagagcttaaatcactatacaatgcagtagtagttctctattatgtacatcaaaggatagatgtaagagacaccaaggaagctttagataagctacaggaagaacaa------------gat---------------------aaa---------------agtcag------caaaag---------------------------------gaacaacaaaaggcggct---------------------------------gacaaagag------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtgcagaatattcaggggcaaatggtacaccaggctctatcacctagaactttaaatgcatgggtaaaagtaatagaa---gagaaggctttcagtccagaagtaatacccatgttttcagcattatcagaaggggccaccccacaagatttaaataccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagatactatcaatgaggaggctgcagaatgggacaggttacatccagtgcatgcagggcctatcccaccagggcagatgagagaacctaggggaagtgatatagcaggaactactagtacccttcaggaacaaataacatggatgaca---------ggcaacccacccgtc---ccagtaggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaactctaagagctgaacaagctacacaggaggtaaaaaactggatgacagaaaccttgttggtc---caaaattcgaacccagattgtaagacaattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagaattctggctgaggcaatg------------agcaaagcaaca------------------------agtacagccataatgatgcagaaa---agcaac---tttaagggc---caaaaa---agaattgttaagtgtttcaactgtggcaaagaaggacatatagctagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcact---------gaa---aggcaggctaattttttagggaaaatttgg---cct---tccaacagg---------ggg---aggccaggaaattttcttcagaac------------------------------agacca------gagccaacagcc---------------------------------------------------ccgccagca---gagaacttcgggttcgga---------------gaggggata---accccctcc------------------------ccgaagcaggagcag------------------------aaaggcgag---------------------gaacaggct------cctccc---tta---gtttccctcaaatcactctttggcagcgacccttagtcgcaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,7rev,10rev,11fw,12rev","1fw,11fw","7rev,10rev,12rev",5,2,3
"AJ249237",">Ref.F2.CM.95.95CM_MP257.AJ249237","Ref","F2","CM","95","95CM_MP257","AJ249237",25,2013,1,30,1471,1500,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgaccagtagtcacaataa",1,30,1,30,1,30,1984,2013,1471,1500,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccgggggggaagaaaaaatataggctgaaacatatagtatgggcaagcagggagctaaaacgatttgcacttaatcctggccttttagagacaacagaaggctgtaagaaaataataggacaactacaaccatcccttcagacagggtcagaggaactgaaatcattatttaacacaatagtagttctctattatgtacatcaaaagatagaggtaagagacaccaaggaagctttagataagctacaggaagaacaagacaaacatcagcaaaaaacacaacaagcaacggctgacaaaggggtcagtaaaggggtcagtcaaaattaccctatactacaaaatcttcaggggcaaatggtacaccagagtctatcacctagaactttaaatgcatgggtaaaagtaatagaagagaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggggccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggttacatccagtgcatgcaggacctatcccaccaggtcagatgagagaaccaaggggaagtgatatagcaggaaccactagtacccttcaggaacaaatagcatggatgacaagcaacccacctgtcccagtaggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaactctaagagctgagcaagccacgcaggaagtaaaaggctggatgacagaaaccttgttggtccaaaatgcgaacccagattgtaagaccattttaaaagcattggggccaggggctacactagaagaaatgatgacagcatgtcagggtgtgggaggacctagccataaagcaagaattttggctgaggcaatgagcaaagcaacaggtgcagccataatgatgcagaagagcaactttaagggccaaagaagaattgttaagtgttttaactgtggcaaagaaggacatatagctagaaattgcagggcccctagaaaaaggggctgctggaaatgtggacaggaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggaaaatgtggccttccaacaaggggaggcccggaaattttcttcagaacagaccagagccaacagccccgccagcagagagcttcgggttcggggaggagatagctccctccccgaagcaggagcagaaagacaaggaacaggttcctcccttgatttccctcaaatcactctttggcagcgaccagtagtcacaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccgggggggaagaaaaaatataggctgaaacatatagtatgggcaagcagggagctaaaacgatttgcacttaatcctggccttttagagacaacagaaggctgtaagaaaataataggacaactacaaccatcccttcagacagggtcagaggaactgaaatcattatttaacacaatagtagttctctattatgtacatcaaaagatagaggtaagagacaccaaggaagctttagataagctacaggaagaacaa------------gac---------------------aaa---------------catcag------caaaaa---------------------------------acacaacaagcaacggct---------------------------------gacaaaggg------------------------------------------------------------------------------------------gtcagtaaaggg------------------gtcagtcaaaattaccctatactacaaaatcttcaggggcaaatggtacaccagagtctatcacctagaactttaaatgcatgggtaaaagtaatagaa---gagaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggggccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggttacatccagtgcatgcaggacctatcccaccaggtcagatgagagaaccaaggggaagtgatatagcaggaaccactagtacccttcaggaacaaatagcatggatgaca---------agcaacccacctgtc---ccagtaggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaactctaagagctgagcaagccacgcaggaagtaaaaggctggatgacagaaaccttgttggtc---caaaatgcgaacccagattgtaagaccattttaaaagcattggggccaggggctacactagaagaaatgatgacagcatgtcagggtgtgggaggacctagccataaagcaagaattttggctgaggcaatg------------agcaaagcaaca------------------------ggtgcagccataatgatgcagaag---agcaac---tttaagggc---caaaga---agaattgttaagtgttttaactgtggcaaagaaggacatatagctagaaattgcagggcccctagaaaaaggggctgctggaaatgtggacaggaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatgtgg---cct---tccaacaag---------ggg---aggcccggaaattttcttcagaac------------------------------agacca------gagccaacagcc---------------------------------------------------ccgccagca---gagagcttcgggttcggg---------------gaggagata---gctccctcc------------------------ccgaagcaggagcag------------------------aaagacaag---------------------gaacaggtt------cctccc---ttg---atttccctcaaatcactctttggcagcgaccagtagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"AF377956",">Ref.F2.CM.97.CM53657.AF377956","Ref","F2","CM","97","CM53657","AF377956",26,2013,0,20,1450,1479,"agagcgtcactattaagcgg","ctctttggcaacgacccttagtcacaataa",1,30,0,20,1,30,1984,2013,1450,1479,1984,2013,"agagcgtcactattaagcgggggaaaattagatgatttggaaaaaattcggttaaggccaggggggaagaaaaaatataggctgaaacatatagtatgggcaagcagggagctagaaagatttgcacttaatcctggccttttagagacaaaggaaggctgtaaacaaataataggacaactacaaccatcccttcagacaggatcagaagagcttaaatcattattcaacacaatagtagtcctctattatgtacatcaaaggataaaaataggagacaccaaggaagctttagataagctacaggaagaacaagacaaaagtcagcaaaaaacacaaccagcagcggctgacaaaggggtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacaccagtctctatcacctagaactttaaatgcatgggtaaaagtaatagaagagaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagattacatccagtgcaggcaggacccatcccaccaggtcagataagagaacctaggggaagtgatatagcaggaactactagcaacctacaggaacaaatagcatggatgacaagcaacccacctgtcccagtaggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaactctaagagctgagcaagcttcacaggaagtaaaaggctggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagatcattttaaaaggattaggaacaggggctacactagaagaaatgatgacagcatgtcagggggtggggggacctggccataaggcaagaattttggctgaggcaatgagccaagtaacatctacatccatattgatgcagaaaagcaactttaagggccaaagaagaaatgttaagtgtttcaactgtggcaaagaaggacatatagctaaaaattgcagggcccctagaaaaaggggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggccttccaacaaggggaggcctggaaattttcttcagaacagaccagagccaacagccccgccagcagaaagcttcgggttcggagaagagataactccctccccgaagcaggagcagaaagacaaggaaatgtaccctcccttgacttccctcaaatcactctttggcaacgacccttagtcacaataa","---------agagcgtcactattaagcgggggaaaattagatgatttggaaaaaattcggttaaggccaggggggaagaaaaaatataggctgaaacatatagtatgggcaagcagggagctagaaagatttgcacttaatcctggccttttagagacaaaggaaggctgtaaacaaataataggacaactacaaccatcccttcagacaggatcagaagagcttaaatcattattcaacacaatagtagtcctctattatgtacatcaaaggataaaaataggagacaccaaggaagctttagataagctacaggaagaacaa------------gac---------------------aaa---------------agtcag------caaaaa---------------------------------acacaaccagcagcggct---------------------------------gacaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacaccagtctctatcacctagaactttaaatgcatgggtaaaagtaatagaa---gagaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagattacatccagtgcaggcaggacccatcccaccaggtcagataagagaacctaggggaagtgatatagcaggaactactagcaacctacaggaacaaatagcatggatgaca---------agcaacccacctgtc---ccagtaggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaactctaagagctgagcaagcttcacaggaagtaaaaggctggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagatcattttaaaaggattaggaacaggggctacactagaagaaatgatgacagcatgtcagggggtggggggacctggccataaggcaagaattttggctgaggcaatg------------agccaagtaaca------------------------tctacatccatattgatgcagaaa---agcaac---tttaagggc---caaaga---agaaatgttaagtgtttcaactgtggcaaagaaggacatatagctaaaaattgcagggcccctagaaaaaggggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggcctggaaattttcttcagaac------------------------------agacca------gagccaacagcc---------------------------------------------------ccgccagca---gaaagcttcgggttcgga---------------gaagagata---actccctcc------------------------ccgaagcaggagcag------------------------aaagacaag---------------------gaaatgtac------cctccc---ttg---acttccctcaaatcactctttggcaacgacccttagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","2rev,4rev,5fw,7rev,10rev,11fw,12rev","5fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"AF084936",">Ref.G.BE.96.DRCBL.AF084936","Ref","G","BE","96","DRCBL","AF084936",27,2013,1,30,1453,1482,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgaccaatagtcaaagtaa",1,30,1,30,1,30,1984,2013,1453,1482,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcttgggagaaaattcggttgaggccagggggaaagaaaagatatagaatgaaacatttagtatgggcaagcagggagctggacagatttgcacttaaccctggccttttagaaacagcagaaggttgtcaaaaaataatggcacagttgcaaccagctctccaaacaggaacagaggagattaaatcactatttaatacagtagcaaccctctattgtgtacatcaaaagatagaggtaagagacaccaaagaggctctagaggaagtggaaaagatacaaaagaagagtcagcaaaaagaaaacagcagcagccaagtcagtcaaaattaccctatagtgcagaatgcacaagggcaaatggtacaccaggccatatcacctagaactttgaatgcatgggtaaaagtagtagaagaaaaggccttcagtccagaagtaatacccatgtttacagcattatcagaaggagccaccccacaagatttaaataccatgctaaatacagtgggggggcatcaagcagctatgcaaatgttaaaggagactatcaatgatgaagctgcagaatgggacaggctacatccacagcaggcagggcctattgcaccaggccagataagggacccaacgggaagtgatatagcaggagctactagtaccctgcaggaacagataagatggatgaccagcaacccacctgtcccagtgggagaaatttataaaagatggataatcctggggttaaataaaatagtaagaatgtacagccctgtcagcattttggacataagacaggggccaaaagaaccctttagagattatgtggatagattctttaaaaccctgagagctgagcaagctacacaggaagtaaaaagctggatgacagacaccttgttgatccaaaatgcaaacccagattgtaagatcatcttaaaaggattaggacaaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagagttttagctgaggcaatgagccaggcatcaggtgcagcagcagccataatgatgcagaaaagcaatttcaagggcccaagaagaacaattaaatgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagaatgcacagaaagacaggctaattttttagggaaaatttggccttccaacaaggggaggccagggaatttccttcagaacaggccagagccaacagccccacccgcagagaacttcgggttcggggaggagatagccccctccccgaagcaggagcagaaggaaaaggaactatatcctctatcttccctcaaatcactctttggcaacgaccaatagtcaaagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcttgggagaaaattcggttgaggccagggggaaagaaaagatatagaatgaaacatttagtatgggcaagcagggagctggacagatttgcacttaaccctggccttttagaaacagcagaaggttgtcaaaaaataatggcacagttgcaaccagctctccaaacaggaacagaggagattaaatcactatttaatacagtagcaaccctctattgtgtacatcaaaagatagaggtaagagacaccaaagaggctctagaggaagtggaaaagatacaa------------aag---------------------aag---------------agtcag------caaaaa------------------------------------------------------------------------------------gaa---aac------------------------------------------------------------------------------------------agcagcagccaa------------------gtcagtcaaaattaccctatagtgcagaatgcacaagggcaaatggtacaccaggccatatcacctagaactttgaatgcatgggtaaaagtagtagaa---gaaaaggccttcagtccagaagtaatacccatgtttacagcattatcagaaggagccaccccacaagatttaaataccatgctaaatacagtgggggggcatcaagcagctatgcaaatgttaaaggagactatcaatgatgaagctgcagaatgggacaggctacatccacagcaggcagggcctattgcaccaggccagataagggacccaacgggaagtgatatagcaggagctactagtaccctgcaggaacagataagatggatgacc---------agcaacccacctgtc---ccagtgggagaaatttataaaagatggataatcctggggttaaataaaatagtaagaatgtacagccctgtcagcattttggacataagacaggggccaaaagaaccctttagagattatgtggatagattctttaaaaccctgagagctgagcaagctacacaggaagtaaaaagctggatgacagacaccttgttgatc---caaaatgcaaacccagattgtaagatcatcttaaaaggattaggacaaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagagttttagctgaggcaatg------------agccaggcatcaggtgca------------------gcagcagccataatgatgcagaaa---agcaat---ttcaagggc---ccaaga---agaacaattaaatgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagaatgcaca---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccagggaatttccttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccacccgca---gagaacttcgggttcggg---------------gaggagata---gccccctcc------------------------ccgaagcaggagcag------------------------aaggaaaag---------------------gaactatat---------cct---cta---tcttccctcaaatcactctttggcaacgaccaatagtcaaagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"AF061641",">Ref.G.KE.93.HH8793_12_1.AF061641","Ref","G","KE","93","HH8793_12_1","AF061641",28,2013,1,30,1473,1502,"atgggtgcgagagcstcastattaagcggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1473,1502,1984,2013,"atgggtgcgagagcstcastattaagcgggggaaaattagatgcatgggaaaaaattcgsctgacgccagggggaaagaaaaaatacagactgaaacatctagtatgggcaagcagagagatggagagatttgcacttaaccctggccttttagaaacagcagaaggttgtcaacaaataatgagccagttgcaaccagctatccamacaggaacagaggagattaaatcattatttaatacagtagcaaccctctattgtgtacatcccaagatagaggtaaaggacaccaaagaagctctagaggaagtagaaaagatacaaaagaaaagtcagcaaaaaatacagcaggcagcaagggatgaaggaaacagcagccaagtcagccaaaattatcctatagtgcagaacgcacaaggacagatggtacaccaggccatatcacctagaactttaaatgcatgggtaaaagtagtagaagaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacacagtgggggggcatcaagcagctatgcaaatgctaaaagatactatcaatgaggaagctgcagagtgggacagaatacatccaccacaggcagggcctattccaccaggccaaataagagaaccaaggggaagtgatatagcaggaaccactagtaacctgcaggaacaaataagatggatgaccagcaacccacctatcccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagattatgtagacaggttctttaaaactttaagagctgagcaagctacacaggaagtaaaaggctggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagactatcttaagagcattaggacccggagctacactagaagaaatgatgacagcatgccagggagtgggaggacccggccataaagcaagagtgttagctgaggcaatgagccaggcaacaggtgcagcagcagccataatgatgcagaaaagcaactttaagggcccgaaaagaaatatcaagtgtttcaattgtggcaaggaaggacacttagccagaaattgcagggcccctagaaaaaagggctgctggaaatgtggaaaggagggacatcaaatgaaagactgcacggaaagacaggctaatttttagggaaaatttggccttccaacaaggggaggccagggaattttcttcagaacaggccagagccaacagccccacccgcagagagcttcgggttcggagaggaaatagccccctccccgaagccagagccgaaggaaaaggagatacatcccttagcttccctcaaatcactctttggcagcgacccctagtcacagtaa","atgggtgcgagagcstcastattaagcgggggaaaattagatgcatgggaaaaaattcgsctgacgccagggggaaagaaaaaatacagactgaaacatctagtatgggcaagcagagagatggagagatttgcacttaaccctggccttttagaaacagcagaaggttgtcaacaaataatgagccagttgcaaccagctatccamacaggaacagaggagattaaatcattatttaatacagtagcaaccctctattgtgtacatcccaagatagaggtaaaggacaccaaagaagctctagaggaagtagaaaagatacaa------------aag---------------------aaa---------------agtcag------caaaaa---------------------------------atacagcaggcagcaagg---------------------------------gatgaagga------------------------------------------------------------------------------------------aacagcagccaa------------------gtcagccaaaattatcctatagtgcagaacgcacaaggacagatggtacaccaggccatatcacctagaactttaaatgcatgggtaaaagtagtagaa---gaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacacagtgggggggcatcaagcagctatgcaaatgctaaaagatactatcaatgaggaagctgcagagtgggacagaatacatccaccacaggcagggcctattccaccaggccaaataagagaaccaaggggaagtgatatagcaggaaccactagtaacctgcaggaacaaataagatggatgacc---------agcaacccacctatc---ccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagattatgtagacaggttctttaaaactttaagagctgagcaagctacacaggaagtaaaaggctggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagactatcttaagagcattaggacccggagctacactagaagaaatgatgacagcatgccagggagtgggaggacccggccataaagcaagagtgttagctgaggcaatg------------agccaggcaacaggtgca------------------gcagcagccataatgatgcagaaa---agcaac---tttaagggc---ccgaaa---agaaatatcaagtgtttcaattgtggcaaggaaggacacttagccagaaattgcagggcccctagaaaaaagggctgctggaaatgtggaaaggagggacatcaaatgaaagactgcacg---------gaa---agacaggctaattttt-agggaaaatttgg---cct---tccaacaag---------ggg---aggccagggaattttcttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccacccgca---gagagcttcgggttcgga---------------gaggaaata---gccccctcc------------------------ccgaagccagagccg------------------------aaggaaaag---------------------gagatacat---------ccc---tta---gcttccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"U88826",">Ref.G.NG.92.92NG083.U88826","Ref","G","NG","92","92NG083","U88826",29,2013,1,30,1477,1506,"gtgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"gtgggtgcgagagcgtcagtattaagcgggggaaaattagattcttgggaaaaaattcggttaaggccagggggaaggaaaaagtataaactaaaacatatagtatgggcaagcagggaactggggagatttgcacttaaccgtgaccttttagaaacagcagaaggttgtgtgcaaataatgaaacagttgcaaccagctctctagacaggaacagaggagcttagatcattatttaatacagtagcaaccctctactgtgtacatcaaaagatagaggtaaaagacaccaaagaagctccagaggaagtggaaaaaatacaaaagaacagtcagcaagaaatacagcaggcagcaaagaatgaaggaaacagtaacccagtcagccaaaattatcctatagtgcagaatgcacaagggcaaatgatacatcaggccatatcacctaggactttgaatgcgtgggtaaaagtagtagaagaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagagggagccaccccacaagatttaaataccatgctaaatacagtgggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgatgaagctgcagagtgggacaggatacatccacagcaggcagggcctattccaccaggccaaataagagagcctagtggaagtgatatagcaggaactactagtaccctgcaggaacaaataagatggatgaccagcaacccacctatcccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtgagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagattatgtagataggttctttaaaactttgagagctgagcaagctacacaggaagtaaaaggttggatgacagacaccttgttggttcaaaatgcgaacccagattgtaaaaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagagttttagctgaggcaatgagccaggcatcaggtgcagcagcagcagccataatgatgcagaaaagcaattttaagggcccgagaagaattattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagaatgcacggaaaggcaggctaattttttagggaaaatttggccttccaacaaggggaggccaggaaactttctccagaacaggacagagccaacagccccaccagcagagagcttcggattcggagaggagatagccccctccccgaagcaggagccaaaggagaaggagctatatcccttaacttccctcaaatcactctttggcagcgacccctagtcacagtaa","gtgggtgcgagagcgtcagtattaagcgggggaaaattagattcttgggaaaaaattcggttaaggccagggggaaggaaaaagtataaactaaaacatatagtatgggcaagcagggaactggggagatttgcacttaaccgtgaccttttagaaacagcagaaggttgtgtgcaaataatgaaacagttgcaaccagctctctagacaggaacagaggagcttagatcattatttaatacagtagcaaccctctactgtgtacatcaaaagatagaggtaaaagacaccaaagaagctccagaggaagtggaaaaaatacaa------------aag---------------------aac---------------agtcag------caagaa---------------------------------atacagcaggcagcaaag---------------------------------aatgaagga------------------------------------------------------------------------------------------aacagtaaccca------------------gtcagccaaaattatcctatagtgcagaatgcacaagggcaaatgatacatcaggccatatcacctaggactttgaatgcgtgggtaaaagtagtagaa---gaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagagggagccaccccacaagatttaaataccatgctaaatacagtgggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgatgaagctgcagagtgggacaggatacatccacagcaggcagggcctattccaccaggccaaataagagagcctagtggaagtgatatagcaggaactactagtaccctgcaggaacaaataagatggatgacc---------agcaacccacctatc---ccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtgagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagattatgtagataggttctttaaaactttgagagctgagcaagctacacaggaagtaaaaggttggatgacagacaccttgttggtt---caaaatgcgaacccagattgtaaaaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagagttttagctgaggcaatg------------agccaggcatcaggtgca------------gca---gcagcagccataatgatgcagaaa---agcaat---tttaagggc---ccgaga---agaattattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagaatgcacg---------gaa---aggcaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccaggaaactttctccagaac------------------------------aggaca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcggattcgga---------------gaggagata---gccccctcc------------------------ccgaagcaggagcca------------------------aaggagaag---------------------gagctatat---------ccc---tta---acttccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,7rev,10rev,11fw,12rev","1fw,11fw","7rev,10rev,12rev",5,2,3
"AY612637",">Ref.G.PT.x.PT2695.AY612637","Ref","G","PT","x","PT2695","AY612637",30,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagggagctggaaaaatttgcactcaaccctgaccttttagaaacagcagaaggttgtcaacaaataatgagacagttacaaccagctctccagacaggaacagaggagcttagatcattatttaatacagtagcaacactctattgtgtacatcaaaggatagaggtaaaagacaccaaagaagctctagaggaagtggaaaagacacagaagaaaagtcagaaacaacagcaggcagcaatggacgaaggaaacagcagccaagtcagccaaaattatcctatagtgcagaatgcacaagggcaaatggtacatcaggccatatcacccagaactttaaatgcatgggtaaaagtagtagaagaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccgcaagatttaaataccatgctaaacacagtaggggggcatcaagcagctatgcaaatgctaaaggatactattaatgaggaagctgcagagtgggacaggatacatccacaacaggcagggcctatcccaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagtaccctgcaggaacaaataagatggatgaccagcaatccacctatcccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacaagggccaaaagaaccttttagagattatgtagataggttctttaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgctggtccaaaatgcgaacccagattgtaagaccatcttaagagcattaggaccaggagcttcactagaagaaatgatgacagcatgtcagggagtgggaggacccagtcacaaagcaagagttttagctgaggcaatgagccaggcatcaggggcaacaataatgatgcaaaaaagcaactttaagggtccaaaaagaatgattaagtgtttcaactgtggcaaggaaggacacctagctagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggagggacaccaaatgaaagactgcacagagagacaggctaattttttagggaaaatttggccttccaacaaggggaggccagggaattttctccagaacaggcccgagccaacagccccacccgcagagagcttcgggttcggagaggagatagccccctccccgaagcaagagccgaaggacaaggagttataccccttaacctccctcaaatcactctttggcagcgacccctagtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagggagctggaaaaatttgcactcaaccctgaccttttagaaacagcagaaggttgtcaacaaataatgagacagttacaaccagctctccagacaggaacagaggagcttagatcattatttaatacagtagcaacactctattgtgtacatcaaaggatagaggtaaaagacaccaaagaagctctagaggaagtggaaaagacacag------------aag---------------------aaa---------------agtcag------aaacaa------------------------------------cagcaggcagcaatg---------------------------------gacgaagga------------------------------------------------------------------------------------------aacagcagccaa------------------gtcagccaaaattatcctatagtgcagaatgcacaagggcaaatggtacatcaggccatatcacccagaactttaaatgcatgggtaaaagtagtagaa---gaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccgcaagatttaaataccatgctaaacacagtaggggggcatcaagcagctatgcaaatgctaaaggatactattaatgaggaagctgcagagtgggacaggatacatccacaacaggcagggcctatcccaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagtaccctgcaggaacaaataagatggatgacc---------agcaatccacctatc---ccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacaagggccaaaagaaccttttagagattatgtagataggttctttaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgctggtc---caaaatgcgaacccagattgtaagaccatcttaagagcattaggaccaggagcttcactagaagaaatgatgacagcatgtcagggagtgggaggacccagtcacaaagcaagagttttagctgaggcaatg------------agccaggcatca------------------------ggggcaacaataatgatgcaaaaa---agcaac---tttaagggt---ccaaaa---agaatgattaagtgtttcaactgtggcaaggaaggacacctagctagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggagggacaccaaatgaaagactgcaca---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccagggaattttctccagaac------------------------------aggccc------gagccaacagcc---------------------------------------------------ccacccgca---gagagcttcgggttcgga---------------gaggagata---gccccctcc------------------------ccgaagcaagagccg------------------------aaggacaag---------------------gagttatac---------ccc---tta---acctccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"AF190127",">Ref.H.BE.93.VI991.AF190127","Ref","H","BE","93","VI991","AF190127",31,2013,1,30,1477,1506,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgaccaatagtcacagtaa",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcttgggagaaaattcggttaaggccagggggaaggaaaaaatataggctaaaacatctggtatgggcaagcagggagctggaaagatttgcacttaaccccgaccttttagaaacagcagatggctgccaacaaatactaggacagctacagccagctcttaagacaggaacagaagaccttcaatcattatataatacaatagcagtcctctattgcgtacatcaaagaatagatgtgaaagacaccaaggaagctttagggaagatagaggaaatacagaataagaacaagcaaagaacacagcaggccccagcagcagctgataaagaaaaggacagcaagatcagtcaaaattatcctatagtacagaatgcccaggggcaaatggtacaccaggcaatatcacctaggaccttaaatgcatgggtaaaagtagtagaagagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagacttaaatgccatgctaaatacagtggggggacatcaagcagccatgcaaatgttaaaagatacaatcaatgaggaagctgcagaatgggataggctacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaagtagcatggatgacaggcaatcccccaattccagtgggagacatctataagagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaaggaccaaaagaacccttcagagactatgtagacaggttctttagagttttaagagctgagcaagctacacaggatgtaaaaaactggatgacagacaccttgttggtccaaaatgcgaatccagattgcaggactattttaaaagcattaggacgaggggcttcaatagaagaaatgatgacagcatgtcagggagtgggaggaccaagccataaagcaagagttttggctgaggcaatgagccaagtaacaaatgcaagtgcagccataatgatgcagaaaggcaactttaagggcccaagaagaactgttaaatgttccaactgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggacaggaaggacaccagatgaaagactgcacaggaagacaggctaattttttagggaaaatttggccttccagcaagggaaggccagggaatttcccccagaagaggctagagccaacagccccaccagcagagagcttcgggttcggagaggagatcaccccctctccgaggcaggagctgaaagaacaggaacctcctttaacttccctcagatcactctttggcaacgaccaatagtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcttgggagaaaattcggttaaggccagggggaaggaaaaaatataggctaaaacatctggtatgggcaagcagggagctggaaagatttgcacttaaccccgaccttttagaaacagcagatggctgccaacaaatactaggacagctacagccagctcttaagacaggaacagaagaccttcaatcattatataatacaatagcagtcctctattgcgtacatcaaagaatagatgtgaaagacaccaaggaagctttagggaagatagaggaaatacag------------aat---------------------aag---------------aacaag------caaaga---------------------------------acacagcaggccccagca---------------------------gcagctgataaagaa------------------------------------------------------------------------------------------aaggacagcaag------------------atcagtcaaaattatcctatagtacagaatgcccaggggcaaatggtacaccaggcaatatcacctaggaccttaaatgcatgggtaaaagtagtagaa---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagacttaaatgccatgctaaatacagtggggggacatcaagcagccatgcaaatgttaaaagatacaatcaatgaggaagctgcagaatgggataggctacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaagtagcatggatgaca---------ggcaatcccccaatt---ccagtgggagacatctataagagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaaggaccaaaagaacccttcagagactatgtagacaggttctttagagttttaagagctgagcaagctacacaggatgtaaaaaactggatgacagacaccttgttggtc---caaaatgcgaatccagattgcaggactattttaaaagcattaggacgaggggcttcaatagaagaaatgatgacagcatgtcagggagtgggaggaccaagccataaagcaagagttttggctgaggcaatg------------agccaagtaacaaatgca------------------agtgcagccataatgatgcagaaa---ggcaac---tttaagggc---ccaaga---agaactgttaaatgttccaactgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggacaggaaggacaccagatgaaagactgcaca---------gga---agacaggctaattttttagggaaaatttgg---cct---tccagcaag---------gga---aggccagggaatttcccccagaag------------------------------aggcta------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcgga---------------gaggagatc---accccctct------------------------ccgaggcaggagctg------------------------aaagaacag---------------------gaacct------------cct---tta---acttccctcagatcactctttggcaacgaccaatagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"AF190128",">Ref.H.BE.93.VI997.AF190128","Ref","H","BE","93","VI997","AF190128",32,2013,1,30,1471,1500,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgaccccttgtcacagtaa",1,30,1,30,1,30,1984,2013,1471,1500,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggacgattagatactttggagaaaattcggttaaggccagggggaaagaaaaaatataggctaaaacatatagtatgggcaagcagagagctggaaagatttgcacttaaccccggccttttagaatcagcagaaggctgtctacaaataatagaacaactacggccatctattaagacaggaacagaagaacttcwatcattatttaataccgtagcgaccctctattgcgtacttcaaagaatagaggtaaaagacaccaaggaagctttagggaagatagaggaaatacaaaacaaaaggcagcaaaaaacacagcaagcaacagctaataaggaaagagacaacaaggtcagtcaaaattatcctatagtacagaatgctcaagggcagatggtacaccagcccatatcacvtaggaccttaaatgcatgggtaaaagtagtagaggagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagacttaaatgctatgctaaatacagtggggggacatcaagcagccatgcaaatgttaaaagatacaatcaatgaggaagctgcagaatgggataggctacatccagtgcatgcagggcctattccaccaggccagatgagagaaccaaggggaagcgatatagctggaactactagtacccttcaggaacaaatagcatggatgacaggcaatccaagtatcccagtgggagacatctataaaagatggataatcctgggattaaataagatagtaagaatgtatagtcctgttagtattctggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaactttaagagctgagcaagccacacaggaggtgaagaattggatgacagacaccttgttggtccagaatgcaaatccagattgcaagactattttaagagcattaggacaaggggcttcaatagaagaaatgatgacagcatgtcagggagtgggaggacctagtcataaagcaagagttttggctgaggcaatgagccaagtaacaaatgcaaatgcagccataatgatgcagaaaagcaactttaagggcccaagaaaaattgttaaatgtttcaattgtggcaaagagggacacatagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaagggaaggacatcagatgaaggactgcacagagagacaggctaattttttagggaaaatctggccttccagcaaagggaggccaggaaattttctccagagcaggccagagccaacagccccaccagcagagagcttcgggttcggggaggagatgacctcctccccgaagcaggagctgaaggacaaggaacctccctttgcttccctcaaatcactctttggcaacgaccccttgtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggacgattagatactttggagaaaattcggttaaggccagggggaaagaaaaaatataggctaaaacatatagtatgggcaagcagagagctggaaagatttgcacttaaccccggccttttagaatcagcagaaggctgtctacaaataatagaacaactacggccatctattaagacaggaacagaagaacttcwatcattatttaataccgtagcgaccctctattgcgtacttcaaagaatagaggtaaaagacaccaaggaagctttagggaagatagaggaaatacaa------------aac---------------------aaa---------------aggcag------caaaaa---------------------------------acacagcaagcaacagct---------------------------------aataaggaa------------------------------------------------------------------------------------------agagacaacaag------------------gtcagtcaaaattatcctatagtacagaatgctcaagggcagatggtacaccagcccatatcacvtaggaccttaaatgcatgggtaaaagtagtagag---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagacttaaatgctatgctaaatacagtggggggacatcaagcagccatgcaaatgttaaaagatacaatcaatgaggaagctgcagaatgggataggctacatccagtgcatgcagggcctattccaccaggccagatgagagaaccaaggggaagcgatatagctggaactactagtacccttcaggaacaaatagcatggatgaca---------ggcaatccaagtatc---ccagtgggagacatctataaaagatggataatcctgggattaaataagatagtaagaatgtatagtcctgttagtattctggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaactttaagagctgagcaagccacacaggaggtgaagaattggatgacagacaccttgttggtc---cagaatgcaaatccagattgcaagactattttaagagcattaggacaaggggcttcaatagaagaaatgatgacagcatgtcagggagtgggaggacctagtcataaagcaagagttttggctgaggcaatg------------agccaagtaacaaatgca------------------aatgcagccataatgatgcagaaa---agcaac---tttaagggc---ccaaga---aaaattgttaaatgtttcaattgtggcaaagagggacacatagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaagggaaggacatcagatgaaggactgcaca---------gag---agacaggctaattttttagggaaaatctgg---cct---tccagcaaa---------ggg---aggccaggaaattttctccagagc------------------------------aggcca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcggg---------------gaggagatg---acctcctcc------------------------ccgaagcaggagctg------------------------aaggacaag---------------------gaacct------------ccc---ttt---gcttccctcaaatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,3fw,4rev,7rev,11fw,12rev","1fw,3fw,11fw","4rev,7rev,12rev",6,3,3
"AF005496",">Ref.H.CF.90.056.AF005496","Ref","H","CF","90","056","AF005496",33,2013,1,30,1474,1503,"atgggtgcgagagcgtcagtattaagcggc","ctctttggcagcgaccccttgttacagtaa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcagtattaagcggcggaaaattagatgcttgggagaaaattcggctaaggccagggggaaagaaaaaatataggctaaaacatctagtatgggcaagcagggagctggaaagatttgcacttaaccccggccttttagaaacaccagaaggctgtctacagataatagaacagatacagccagctattaagacaggaacagaagaacttaaatcattatttaatctagtagcagtcctctattgcgtacatcgaaaaatagatgtgaaagacaccaaggaggctttagataagatagaggaaatacaaaacaaaagtcagcaaaaaacacagcaagcagcagctgataaggaaaaagacaacaaggtcagtcaaaattatcctatagtacagaatgctcaagggcagatggtacaccaggccatatcacctaggaccttaaatgcatgggtaaaagtagtagaagaaaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagacttaaatgctatgctaaatacagtggggggacatcaagcagccatgcagatgttaaaagatacaatcaatgaggaagctgcagaatgggacagggtacatccagtgcatgcagggcctattccaccaggccaaatgagagaaccaaggggaagcgatatagcaggaactactagtaccctgcaggaacaaatagcatggatgacaggcaatccagctatcccagtgggagacatctataaaagatggataatcctgggattaaataagatagtaagaatgtatagtcctgtcagcattctggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttttttaaaactttaagagctgagcaagccacacaggatgtgaagaattggatgacagaaaccttgttggtccaaaatgcaaatccagattgcaagactatattaagagcattaggacaaggggcttcaatagaagaaatgatgacagcatgtcagggagtgggaggacctagtcataaagcaagagttttggctgaggcaatgagccaagtaacaaatacaaatacagccataatgatgcagaaaggcaactttaagggccaaagaaaatttgttaaatgcttcaactgtggcaaagagggacacatagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaagagaaggacatcagatgaaagactgcacagagagacaggctaattttttagggaaaatttggccttccagcaaagggaggccaggaaattttctccagagcaggccagaaccaacagccccaccagcagagagcttcgggttcggagaggagatgaccccctctccgaagcaggagcagctgaaggacaaggaacctcccttagcttccctcagatcactctttggcagcgaccccttgttacagtaa","atgggtgcgagagcgtcagtattaagcggcggaaaattagatgcttgggagaaaattcggctaaggccagggggaaagaaaaaatataggctaaaacatctagtatgggcaagcagggagctggaaagatttgcacttaaccccggccttttagaaacaccagaaggctgtctacagataatagaacagatacagccagctattaagacaggaacagaagaacttaaatcattatttaatctagtagcagtcctctattgcgtacatcgaaaaatagatgtgaaagacaccaaggaggctttagataagatagaggaaatacaa------------aac---------------------aaa---------------agtcag------caaaaa---------------------------------acacagcaagcagcagct---------------------------------gataaggaa------------------------------------------------------------------------------------------aaagacaacaag------------------gtcagtcaaaattatcctatagtacagaatgctcaagggcagatggtacaccaggccatatcacctaggaccttaaatgcatgggtaaaagtagtagaa---gaaaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagacttaaatgctatgctaaatacagtggggggacatcaagcagccatgcagatgttaaaagatacaatcaatgaggaagctgcagaatgggacagggtacatccagtgcatgcagggcctattccaccaggccaaatgagagaaccaaggggaagcgatatagcaggaactactagtaccctgcaggaacaaatagcatggatgaca---------ggcaatccagctatc---ccagtgggagacatctataaaagatggataatcctgggattaaataagatagtaagaatgtatagtcctgtcagcattctggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttttttaaaactttaagagctgagcaagccacacaggatgtgaagaattggatgacagaaaccttgttggtc---caaaatgcaaatccagattgcaagactatattaagagcattaggacaaggggcttcaatagaagaaatgatgacagcatgtcagggagtgggaggacctagtcataaagcaagagttttggctgaggcaatg------------agccaagtaacaaataca------------------aatacagccataatgatgcagaaa---ggcaac---tttaagggc---caaaga---aaatttgttaaatgcttcaactgtggcaaagagggacacatagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaagagaaggacatcagatgaaagactgcaca---------gag---agacaggctaattttttagggaaaatttgg---cct---tccagcaaa---------ggg---aggccaggaaattttctccagagc------------------------------aggcca------gaaccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcgga---------------gaggagatg---accccctct------------------------ccgaagcaggagcag---------------------ctgaaggacaag---------------------gaacct------------ccc---tta---gcttccctcagatcactctttggcagcgaccccttgttacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,10rev,12rev",6,2,4
"FJ711703",">Ref.H.GB.00.00GBAC4001.FJ711703","Ref","H","GB","00","00GBAC4001","FJ711703",34,2013,1,30,1471,1500,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgaccccttgtcacagtaa",1,30,1,30,1,30,1984,2013,1471,1500,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcttgggagaaaattcggttaaggccagggggaaagaaaaaatataggctaaaacatctagtatgggcaagcagggagctggacagatttgcactcaaccccgaccttttagaaacagcagatggctgtctaaaaataytaggacagatacagccagctcttcagacaggaacagaagaaattaaatcgttatttaatctagtagcagtcctctattgtgtacatcagaaaatagaggtacaagataccagtgaagctttaaataaggtaaaggagatacagaacaagaaccagcaaacaacacagcaggcaacagctrgtaaagagaaggacagcaagatcagtcaaaattatcctatagtacagaatgcccaagggcaaatggtacaccaggccatatcacctaggaccttaaatgcatgggtaaaagtagtagaagagaaggcttttagcccagaagtaatacccatgttttcagcattatcagarggagcmaccccacaagacytaaataccatgttaaactcagtggggggacatcaggcagccatgcaaatrttaaaagatacaatcaatgaggaagctgcagaatgggataggacacatccagtgcatgcagggcctattccaccaggccagatgagagaaccaaggggaagcgatatagcaggaactactagyaaccttcaggaacaaatagcatggatgacargyaatccccctrtcccagtgggrgakatctataaaagatggataatcwtgggattaaataaaatagtaagaatgtatagtcctgtcagcattttggacataaaacaagggccaaaagaaccctttagagaytatgtagacaggttytttaaaactttaagagctgagcaagccacacaggacgtgaagaattggatgacagacaccttgttggtccaaaatgcaaatccagattgcaagactattttaaaagcattaggacaaggggcttcaatagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttggctgaggcaatgagtcaaatgacaaatatgaatacagccataatggtgcagaaaggcaactttaagggccaaagaagaactgttaaatgtttcaactgtggtaaagaaggacacatagcaagaaactgcagggcccctaggaaaaagggctgttggaaatgtgggagggaaggacatcagatgaaagactgcacagagagacaggcgaattttttagggaaaatctggccttccagcaaagggaggccagggaactttctccagagcaggccagaaccaacagccccaccagcagaatgcttcgggttcggggaggagatgacaccccctccgaagcaggagatgaaggaaaaggaacctcccttaacttccctcagatcactctttggcagcgaccccttgtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcttgggagaaaattcggttaaggccagggggaaagaaaaaatataggctaaaacatctagtatgggcaagcagggagctggacagatttgcactcaaccccgaccttttagaaacagcagatggctgtctaaaaataytaggacagatacagccagctcttcagacaggaacagaagaaattaaatcgttatttaatctagtagcagtcctctattgtgtacatcagaaaatagaggtacaagataccagtgaagctttaaataaggtaaaggagatacag------------aac---------------------aag---------------aaccag------caaaca---------------------------------acacagcaggcaacagct---------------------------------rgtaaagag------------------------------------------------------------------------------------------aaggacagcaag------------------atcagtcaaaattatcctatagtacagaatgcccaagggcaaatggtacaccaggccatatcacctaggaccttaaatgcatgggtaaaagtagtagaa---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagarggagcmaccccacaagacytaaataccatgttaaactcagtggggggacatcaggcagccatgcaaatrttaaaagatacaatcaatgaggaagctgcagaatgggataggacacatccagtgcatgcagggcctattccaccaggccagatgagagaaccaaggggaagcgatatagcaggaactactagyaaccttcaggaacaaatagcatggatgaca---------rgyaatccccctrtc---ccagtgggrgakatctataaaagatggataatcwtgggattaaataaaatagtaagaatgtatagtcctgtcagcattttggacataaaacaagggccaaaagaaccctttagagaytatgtagacaggttytttaaaactttaagagctgagcaagccacacaggacgtgaagaattggatgacagacaccttgttggtc---caaaatgcaaatccagattgcaagactattttaaaagcattaggacaaggggcttcaatagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttggctgaggcaatg------------agtcaaatgacaaatatg------------------aatacagccataatggtgcagaaa---ggcaac---tttaagggc---caaaga---agaactgttaaatgtttcaactgtggtaaagaaggacacatagcaagaaactgcagggcccctaggaaaaagggctgttggaaatgtgggagggaaggacatcagatgaaagactgcaca---------gag---agacaggcgaattttttagggaaaatctgg---cct---tccagcaaa---------ggg---aggccagggaactttctccagagc------------------------------aggcca------gaaccaacagcc---------------------------------------------------ccaccagca---gaatgcttcgggttcggg---------------gaggagatg---acaccccct------------------------ccgaagcaggagatg------------------------aaggaaaag---------------------gaacct------------ccc---tta---acttccctcagatcactctttggcagcgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"EF614151",">Ref.J.CD.97.J_97DC_KTB147.EF614151","Ref","J","CD","97","J_97DC_KTB147","EF614151",35,2013,0,0,1429,1458,"","ctctttggcagcgacccctcgtcacagtaa",1,30,0,0,1,30,1984,2013,1429,1458,1984,2013,"gcatgggagaaaatttggctgaggcgacggggagagaaaaaatacaggcgaaaacatatagtatgggcaagcagggagctggacagatatgcacttaaccctggccttctatagtgagcagaaggcggtgaacagatactagtacagatccaaccagatctttaaacaggagcagaggagataaaatcattatttaacacagaagcaaccctctattgtgtacattagaggatagacataagagacaccaaggaggctttagacaagatagaggaactttaaaacaaaagcaaggagaaagctaagaaagaagctgtcaaaaaatacaacagtcaggtgagtcacaattatcctatattgcaaaatatgtaaggggaactagtacaccaggccctatcacctagaacattaaatgcatgggtaaaggtgatagaagagaaaggtttcaacccagaagtgatacccatgttttcagcattatcagaaggagccactccacaagatttaaataccatgctaaacacggtggggggacatcaagcagcgatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggctccatccagtacatgcaggacctgttgcaccaggtcagatgagagaaccgaggggaagtgatatagcaggaactactagtaaccttcaggaacaaatagcatggataacaggcaacggtggcaaccaacctatcccagtaggagaaatctataaaagatggataattttaggattaaataaaatagtgagaatgtatagccctgtcagcattttggacataaggcaaggaccaaaagaaccttttagagactatgtggataggttctttaaaactctaagagccgagcaagctacacaggaggtaaaaaattggatgacagataccttgttggtccaaaatgcgaatccagattgtaagaccattctaagagcattaggagcaggagctacactagaagaaatgatgacagcatgtcagggagtgagagtatccagtcatagagcaagagtttttggtgaggcaataagccaagtaaacaatacaaacataataatgcaaagaggtaactttaggggccagaagagaagtgttaaatgtttcaactgtggtaaagagggacacatagcaaaaaattgcagggcccctagaaaaaagggctgttgaaagtgtggaaaggaaggacaccaaataaaaaactgcactgagagacaggccaattttttagggaaagtttggccttccagcaaggggaggccagggaactttctccagagcaggccagaaccaacagccccaccagcagaaagcttcgggttcggggagaagataactccctcccagaaacaggaaccgaggaaggaactatatccttcagcttccctcaaatcactctttggcagcgacccctcgtcacagtaa","------------------------------------------gcatgggagaaaatttggctgaggcgacggggagagaaaaaatacaggcgaaaacatatagtatgggcaagcagggagctggacagatatgcacttaaccctggccttctatagtgagcagaaggcggtgaacagatactagtacagatccaaccagatctttaaacaggagcagaggagataaaatcattatttaacacagaagcaaccctctattgtgtacattagaggatagacataagagacaccaaggaggctttagacaagatagaggaactttaa------------aac---------------------aaa---------------agcaag------gagaaa---------------------------------gctaagaaagaa---gct---------------------------------gtcaaaaaa------------------------------------------------------------------------------------------tacaacagtcag------------------gtgagtcacaattatcctatattgcaaaatatgtaaggggaactagtacaccaggccctatcacctagaacattaaatgcatgggtaaaggtgatagaa---gagaaaggtttcaacccagaagtgatacccatgttttcagcattatcagaaggagccactccacaagatttaaataccatgctaaacacggtggggggacatcaagcagcgatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggctccatccagtacatgcaggacctgttgcaccaggtcagatgagagaaccgaggggaagtgatatagcaggaactactagtaaccttcaggaacaaatagcatggataacaggcaacggtggcaaccaacctatc---ccagtaggagaaatctataaaagatggataattttaggattaaataaaatagtgagaatgtatagccctgtcagcattttggacataaggcaaggaccaaaagaaccttttagagactatgtggataggttctttaaaactctaagagccgagcaagctacacaggaggtaaaaaattggatgacagataccttgttggtc---caaaatgcgaatccagattgtaagaccattctaagagcattaggagcaggagctacactagaagaaatgatgacagcatgtcagggagtgagagtatccagtcatagagcaagagtttttggtgaggcaata------------agccaagtaaac------------------------aatacaaacataataatgcaaaga---ggtaac---tttaggggc---cagaag---agaagtgttaaatgtttcaactgtggtaaagagggacacatagcaaaaaattgcagggcccctagaaaaaagggctgttgaaagtgtggaaaggaaggacaccaaataaaaaactgcact---------gag---agacaggccaattttttagggaaagtttgg---cct---tccagcaag---------ggg---aggccagggaactttctccagagc------------------------------aggcca------gaaccaacagcc---------------------------------------------------ccaccagca---gaaagcttcgggttcggg---------------gagaagata---actccctcc------------------------cagaaacaggaaccg------------------------aggaag------------------------gaactatat---------cct---tca---gcttccctcaaatcactctttggcagcgacccctcgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","2rev,3fw,4rev,7rev,11fw,12rev","3fw,11fw","2rev,4rev,7rev,12rev",6,2,4
"GU237072",">Ref.J.CM.04.04CMU11421.GU237072","Ref","J","CM","04","04CMU11421","GU237072",36,2013,1,30,1462,1491,"atgggtgcgagagcgtcagtattaagcggc","ctctttggcarcgacccctygtcacaataa",1,30,1,30,1,30,1984,2013,1462,1491,1984,2013,"atgggtgcgagagcgtcagtattaagcggcggaaaattagatacttgggagaaaattcggttgaggccaggggggaagaaacgttataggctaaaacatttagtatgggcaagcagggagctggacagatttgcacttaaccctgrccttctagaaacatcaaaaggctgtcaacaaatattagtacagctccaaccatcttatcaaacagggacagaagaaattaagtcattatataacacagtagcaaccctctattgcgtacatgaggrsatagaggtaaaagacaccaaggaarctttagacaagatagaggaactacaaaagaagaacaagcaacaggcacagaaagcagaarctgacaaaagrracarcagtcaagtcagtcaaaattatcctatagtgcagaacatgcaagggcaaccagtacaycargccctatcacctagaactttaaatgcatgggtaaaagtgrtagaagaraaggctttyagcccagaagtaatacccatgttttcagcyttatcagaaggagccaccccrcaagatttaaataccatgctaaatacagtrgggggacaccargcagctatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggataggktacatccagtacatgcagggcctccrgcaccaggccaggcgagagaaccgaggggaagtgatatagcaggaactactagtaccctccaggaacaaatagcatggatgacaggcaacccacctatcccagtaggggaaatttataaaagrtggataattctgggattaaataaaatagtragaatgtatagccctgtcagcattttggatataagacaaggaccaaaagarccttttagagaytatgtagatcggttctttaaaactctaagagctgagcaagctacacaggaagtaaaaaattggatgacagataccttgttgatccaaaatgcaaatccagattgcagaaccatyttaaaagcattaggaccaggagctacactagargaaatgatgacagcatgycagggagtgggaggacctggtcataaagcaagagttttggcwgaagcaatgagccaaatgaccaatacagcaaacataatgatgcaaargggtaaytttaagggccaraaaagaatgattaagtgtttcaattgtggwaaaccaggacacctagcmagaaaytgcagagcccctagraaraagggctgttggaaatgtggacaggaaggacaycaaatgaaagactgcactgagagacaggctaattttttagggaaratctggccttccaacaargggaggccagggaactttctycagagcagrccagagccaacagccccaccagcagagagcttcgggttcggggaagagaccycyyccccgaaacaagaagcgaaggaactgtatcctctaacttccctcaaatcactctttggcarcgacccctygtcacaataa","atgggtgcgagagcgtcagtattaagcggcggaaaattagatacttgggagaaaattcggttgaggccaggggggaagaaacgttataggctaaaacatttagtatgggcaagcagggagctggacagatttgcacttaaccctgrccttctagaaacatcaaaaggctgtcaacaaatattagtacagctccaaccatcttatcaaacagggacagaagaaattaagtcattatataacacagtagcaaccctctattgcgtacatgaggrsatagaggtaaaagacaccaaggaarctttagacaagatagaggaactacaa------------aag---------------------aag---------------aacaag------caacag---------------------------------gcacagaaagcagaarct---------------------------------gacaaaagr------------------------------------------------------------------------------------------racarcagtcaa------------------gtcagtcaaaattatcctatagtgcagaacatgcaagggcaaccagtacaycargccctatcacctagaactttaaatgcatgggtaaaagtgrtagaa---garaaggctttyagcccagaagtaatacccatgttttcagcyttatcagaaggagccaccccrcaagatttaaataccatgctaaatacagtrgggggacaccargcagctatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggataggktacatccagtacatgcagggcctccrgcaccaggccaggcgagagaaccgaggggaagtgatatagcaggaactactagtaccctccaggaacaaatagcatggatgaca---------ggcaacccacctatc---ccagtaggggaaatttataaaagrtggataattctgggattaaataaaatagtragaatgtatagccctgtcagcattttggatataagacaaggaccaaaagarccttttagagaytatgtagatcggttctttaaaactctaagagctgagcaagctacacaggaagtaaaaaattggatgacagataccttgttgatc---caaaatgcaaatccagattgcagaaccatyttaaaagcattaggaccaggagctacactagargaaatgatgacagcatgycagggagtgggaggacctggtcataaagcaagagttttggcwgaagcaatg------------agccaaatgaccaat---------------------acagcaaacataatgatgcaaarg---ggtaay---tttaagggc---caraaa---agaatgattaagtgtttcaattgtggwaaaccaggacacctagcmagaaaytgcagagcccctagraaraagggctgttggaaatgtggacaggaaggacaycaaatgaaagactgcact---------gag---agacaggctaattttttagggaaratctgg---cct---tccaacaar---------ggg---aggccagggaactttctycagagc------------------------------agrcca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcggg---------------gaagagacc------ycyycc------------------------ccgaaacaagaagcg------------------------aag---------------------------gaactgtat---------cct---cta---acttccctcaaatcactctttggcarcgacccctygtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,5fw,10rev,12rev","1fw,5fw","4rev,10rev,12rev",5,2,3
"AF082394",">Ref.J.SE.93.SE9280_7887.AF082394","Ref","J","SE","93","SE9280_7887","AF082394",37,2013,1,30,1465,1494,"atgggtgcgagagcgtcaatattaagtggg","ctctttggcagcgaccccttgtcacaataa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcaatattaagtgggggaaaattagatgattgggaaaaaattcggttgaggccaggggggaagaaaaaatataggataaagcatctagtatgggcaagcagggagctggacagatttgcacttaaccctggccttctagagtcagcaaaaggctgtcaacaaatactagtacagctccaaccagctctccagacaggaacacaagaaattaaatcattgtataatacagtagcaaccctctattgcgtacatcagaggatagaaataaaagacaccatggaagctttagagaagatagaggaaattcaaaacaagaacaaacagcaggcacagaaagcagaaactgacaaaaaagacaacagtcaggtcagtcaaaattatcctatagtgcagaatctgcaagggcaaccggtacaccaggccctatcacctagaactttaaatgcatgggtaaaagtgatagaagaaaaagctttcagcccagaagtgatacccatgttttcagcattatcagaaggagccaccccgcaagatttaaataccatgctaaacacaatagggggacaccaagcagctatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggacagggtacatccagtacatgcagggcctattgcaccaggccaggtgagagaaccaaggggaagtgatatagcaggaactactagtaccctccaggaacaaataggatggatgacaggcaatccacctatcccagtaggagagatttataaaagatggataattctgggactaaataaaatagtaagaatgtatagccctgtcagtattttggatataagacaaggaccaaaagaaccttttagagactatgtagacaggttctttaaagctctaagagctgagcaagctacacaggatgtaaaaaattggatgacagataccttgctggtccaaaatgcaaatccagattgcaagaccattttaaaagcattaggatcaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggtcataaggcgagagttttggctgaagcaatgagccaagtgaccaataccaacataatgatgcaaagaggtaactttagggaccataaaagaattgttaagtgtttcaattgtggcaaacaaggacacatagcaaaaaactgcagggcccctagaaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggaagatttggccttccagcaaagggaggccagggaactttctccagagcagaccagagccaacagccccaccagcagagagcctcgggctcggagaggagatcccctccccgaaacaggagccgaaggacaaggaactgtatcctctaacttccctcaaatcactctttggcagcgaccccttgtcacaataa","atgggtgcgagagcgtcaatattaagtgggggaaaattagatgattgggaaaaaattcggttgaggccaggggggaagaaaaaatataggataaagcatctagtatgggcaagcagggagctggacagatttgcacttaaccctggccttctagagtcagcaaaaggctgtcaacaaatactagtacagctccaaccagctctccagacaggaacacaagaaattaaatcattgtataatacagtagcaaccctctattgcgtacatcagaggatagaaataaaagacaccatggaagctttagagaagatagaggaaattcaa------------aac---------------------aag---------------aacaaa------cagcag---------------------------------gcacagaaagcagaaact---------------------------------gacaaaaaa------------------------------------------------------------------------------------------gacaacagtcag------------------gtcagtcaaaattatcctatagtgcagaatctgcaagggcaaccggtacaccaggccctatcacctagaactttaaatgcatgggtaaaagtgatagaa---gaaaaagctttcagcccagaagtgatacccatgttttcagcattatcagaaggagccaccccgcaagatttaaataccatgctaaacacaatagggggacaccaagcagctatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggacagggtacatccagtacatgcagggcctattgcaccaggccaggtgagagaaccaaggggaagtgatatagcaggaactactagtaccctccaggaacaaataggatggatgaca---------ggcaatccacctatc---ccagtaggagagatttataaaagatggataattctgggactaaataaaatagtaagaatgtatagccctgtcagtattttggatataagacaaggaccaaaagaaccttttagagactatgtagacaggttctttaaagctctaagagctgagcaagctacacaggatgtaaaaaattggatgacagataccttgctggtc---caaaatgcaaatccagattgcaagaccattttaaaagcattaggatcaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggtcataaggcgagagttttggctgaagcaatg------------agccaagtgacc------------------------aataccaacataatgatgcaaaga---ggtaac---tttagggac---cataaa---agaattgttaagtgtttcaattgtggcaaacaaggacacatagcaaaaaactgcagggcccctagaaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggaagatttgg---cct---tccagcaaa---------ggg---aggccagggaactttctccagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcctcgggctcgga---------------gaggagatc------ccctcc------------------------ccgaaacaggagccg------------------------aaggacaag---------------------gaactgtat---------cct---cta---acttccctcaaatcactctttggcagcgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"AJ249235",">Ref.K.CD.97.97ZR_EQTB11.AJ249235","Ref","K","CD","97","97ZR_EQTB11","AJ249235",38,2013,1,30,1459,1488,"atgggtgcgagagcttcagtattaagcggg","ctctttggcagcgacccgttgtcacagtaa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcttcagtattaagcgggggaaaattagacaaatgggaaaaaattcagttacggccagggggaaagaaaaaatacaggctaaaacatctagtatgggcaagcagggagctagaacgatttgcacttaaccctaaccttttagagacagtagaaggctgtcggcaaataataagacaactacaaccatcccttcaaacaggctcggaagagcttagatcactatttaatacagtagcaaccctctattgggtgcatcaaagtatacaggtaagggacaccaaggaagccttagacaaactagaggaagaacaaaacagaactcagcaaaagacacagcaaggaaaagctgacaaaggggttagtcaaaattaccctatagtacagaatcttcaggggcaaatggtacaccaggccctatcacctagaactttaaatgcatgggttaaagtaatagaagagaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccactccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggacaggatgcacccagtgcaagcagggcctatcccaccaggccaaataagagaacctagggggagtgatatagcaggaactactagcactcttcaggaacaaataacatggatgacaagcaacccacctatcccagtgggagaaatctataaaagatggataatcctggggttaaataaaatagtgagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagataggttctttagagttctaagagctgaacaagccacacaggaagtaaaaaattggatgacagaaaccctgttggtccaaaacgcaaacccagattgtaggaccattttaaaggcgttgggatcaggggctacattagaagaaatgatgacagcatgtcagggagtaggagggcctggccataaagcaagggttttggctgaggcaatgagccaggtaacaaattcagccgtaatgatgcagagaggcaactttaagggtcaaagaagaattattaagtgcttcaactgtggcaaagaaggacacctagccagaaattgtagggcccctagaaaaaagggctgttggaaatgtgggaaagaaggacatcagatgaaagactgttctgagagacaggctaattttttagggaagttctggcctctcaacaaagagaggccaggaaattttcttcagaacagaccagagccaacagccccaccagcagagagctttgggttcggggagaagataaccccctctctgagacaggaaatgaaagatcaggaacagggtcctcctttaacttccctcaaatcactctttggcagcgacccgttgtcacagtaa","atgggtgcgagagcttcagtattaagcgggggaaaattagacaaatgggaaaaaattcagttacggccagggggaaagaaaaaatacaggctaaaacatctagtatgggcaagcagggagctagaacgatttgcacttaaccctaaccttttagagacagtagaaggctgtcggcaaataataagacaactacaaccatcccttcaaacaggctcggaagagcttagatcactatttaatacagtagcaaccctctattgggtgcatcaaagtatacaggtaagggacaccaaggaagccttagacaaactagaggaagaacaa------------aac---------------------aga---------------actcag------caaaag---------------------------------acacagcaaggaaaagct---------------------------------gacaaaggg------------------------------------------------------------------------------------------------------------------------gttagtcaaaattaccctatagtacagaatcttcaggggcaaatggtacaccaggccctatcacctagaactttaaatgcatgggttaaagtaatagaa---gagaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccactccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggacaggatgcacccagtgcaagcagggcctatcccaccaggccaaataagagaacctagggggagtgatatagcaggaactactagcactcttcaggaacaaataacatggatgaca---------agcaacccacctatc---ccagtgggagaaatctataaaagatggataatcctggggttaaataaaatagtgagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagataggttctttagagttctaagagctgaacaagccacacaggaagtaaaaaattggatgacagaaaccctgttggtc---caaaacgcaaacccagattgtaggaccattttaaaggcgttgggatcaggggctacattagaagaaatgatgacagcatgtcagggagtaggagggcctggccataaagcaagggttttggctgaggcaatg------------agccaggtaaca------------------------aattcagccgtaatgatgcagaga---ggcaac---tttaagggt---caaaga---agaattattaagtgcttcaactgtggcaaagaaggacacctagccagaaattgtagggcccctagaaaaaagggctgttggaaatgtgggaaagaaggacatcagatgaaagactgttct---------gag---agacaggctaattttttagggaagttctgg---cct---ctcaacaaa---------gag---aggccaggaaattttcttcagaac------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagctttgggttcggg---------------gagaagata---accccctct------------------------ctgagacaggaaatg------------------------aaagatcag---------------------gaacagggt------cctcct---tta---acttccctcaaatcactctttggcagcgacccgttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,11fw,12rev","1fw,11fw","4rev,7rev,12rev",5,2,3
"AJ249239",">Ref.K.CM.96.96CM_MP535.AJ249239","Ref","K","CM","96","96CM_MP535","AJ249239",39,2013,1,30,1459,1488,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccattgtcacaataa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaagattcggttacggccagggggaaagaaaaaatataaactgaaacatctagtatgggcaagcagggagctagaacgatttgcactcaaccctggccttttagagacaacagaaggctgtcggcaaataataacacaaatacagccatccattcaaacaggatcagaagagattaaatcactatataatacaatagcagtcctctattttgtacatcaaaagatagaggtaaaagacaccaaggaagccttagacaaactagaggaagaacaaaacaaaagtcagcgaaagacacaacaagaagcagctgacaaaggggtcagtcaaaattaccctatagtacagaatctgcaggggcaaatggtacaccaggccctatcacctagaactttaaatgcatgggtgaaggtaatagaggagaaggctttcagcccagaagtaatacccatgtttacagcattatcagaaggagccactccacaagatctaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagatactatcaatgatgaagctgcagaatgggacaggttacacccagtgcatgcagggcctatcccaccaggccaaatgagagaaccgagggggagtgacatagcaggaactaccagcacccttcaggaacaaatagcatggatgacaagcaacccacctgtcccagtgggggaaatctataaaagatggataatcctgggtttaaacaaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagataggttctttaaaaccctaagagctgaacaagccacacaggaagtaaagaattggatgacagacaccctgttggtccaaaacgcaaacccagattgtaagaccattttaaaagcgttgggaccaggggcttcattagaagagatgatgacagcatgtcagggagtgggagggcctagccataaagcaagaattttggctgaggcaatgagccaggtaacaaatccagttgtaatgatgcagaaaggcaactttaagggccatagaaaaattgttaagtgcttcaactgtggcaaagaagggcacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggaaggaaggacatcagatgaaagactgcactgagagacaggctaattttttagggaaaatctggccttcccacaaggggaggccagggaattttcttcagagcagaccagagccaacagccccaccagcagagagcttcgggttcggggaggagataaccccctctccgaggcaggagaccaaagacaaggaacagagccctcctttaacttccctcaaatcactctttggcaacgacccattgtcacaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaagattcggttacggccagggggaaagaaaaaatataaactgaaacatctagtatgggcaagcagggagctagaacgatttgcactcaaccctggccttttagagacaacagaaggctgtcggcaaataataacacaaatacagccatccattcaaacaggatcagaagagattaaatcactatataatacaatagcagtcctctattttgtacatcaaaagatagaggtaaaagacaccaaggaagccttagacaaactagaggaagaacaa------------aac---------------------aaa---------------agtcag------cgaaag---------------------------------acacaacaagaagcagct---------------------------------gacaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatctgcaggggcaaatggtacaccaggccctatcacctagaactttaaatgcatgggtgaaggtaatagag---gagaaggctttcagcccagaagtaatacccatgtttacagcattatcagaaggagccactccacaagatctaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagatactatcaatgatgaagctgcagaatgggacaggttacacccagtgcatgcagggcctatcccaccaggccaaatgagagaaccgagggggagtgacatagcaggaactaccagcacccttcaggaacaaatagcatggatgaca---------agcaacccacctgtc---ccagtgggggaaatctataaaagatggataatcctgggtttaaacaaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagataggttctttaaaaccctaagagctgaacaagccacacaggaagtaaagaattggatgacagacaccctgttggtc---caaaacgcaaacccagattgtaagaccattttaaaagcgttgggaccaggggcttcattagaagagatgatgacagcatgtcagggagtgggagggcctagccataaagcaagaattttggctgaggcaatg------------agccaggtaaca------------------------aatccagttgtaatgatgcagaaa---ggcaac---tttaagggc---cataga---aaaattgttaagtgcttcaactgtggcaaagaagggcacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggaaggaaggacatcagatgaaagactgcact---------gag---agacaggctaattttttagggaaaatctgg---cct---tcccacaag---------ggg---aggccagggaattttcttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcggg---------------gaggagata---accccctct------------------------ccgaggcaggagacc------------------------aaagacaag---------------------gaacagagc------cctcct---tta---acttccctcaaatcactctttggcaacgacccattgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"GQ477441",">Ref.01_AE.AF.07.569M.GQ477441","Ref","01_AE","AF","07","569M","GQ477441",40,2013,1,30,1468,1497,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgacccattgtcccagtaa",1,30,1,30,1,30,1984,2013,1468,1497,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttacggccaggaggaaagaaaaaatataagatgaaacatttagtatgggcaagcagagagttagaaagattcgcacttaatcctggcctattagaaacagcagaaggatgtcaacaaataatagaacagttacagtcaactctcaagacaggatcagaagaacttaaatccttatataatacagtagtaaccctctggtgcgtacaccaaaggatagaggtaaaagacaccaaggaagctttagataaaatagaggaagaacaaaagaagagccggcaaaagacacagcaggcagcagctggcacaggaaacagcagccaagccagccaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcagcctttatcacctagaactttgaatgcatgggtgaaggtagtagaagaaaagggttttaacccagaagtaatatccatgttctcagcattatcagagggagccaccccacaagatttaaatatgatgctaaatatagtagggggacaccaggcagcaatgcaaatgttaaaagacaccatcaacgaggaagctgcagaatgggataggacacatccagtacatgcagggcctattccaccaggccaaatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgacaaacactcctcctatcccagtgggagaaatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagattatgtagataggttctttaaaactctcagagcggaacaagctacacaggaggtaaaaaactggatgacagaaaccttgttagtccaaaatgcgaatccagactgtaggtccattttaaaagcattagggtcaggagctacattagaagaaatgatgacagcatgccaaggagtgggaggacctagtcataaagcaagagttctggctgaggcaatgagccaagcacaacatgcaactataatgatgcagagaggcaattttaagggccagaaaagaattaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggttgttggaaatgcgggaaggaaggacatcaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggccttccaccaacaagggaaggccgggaaattttcctcagagcagaccagagccaacagccccgccagcagactgggggatgggggaagagataacctcattactgaaacaggaacagaaagacaaggaacatcttcctcctacagtttccctcaaatcactctttggcaacgacccattgtcccagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttacggccaggaggaaagaaaaaatataagatgaaacatttagtatgggcaagcagagagttagaaagattcgcacttaatcctggcctattagaaacagcagaaggatgtcaacaaataatagaacagttacagtcaactctcaagacaggatcagaagaacttaaatccttatataatacagtagtaaccctctggtgcgtacaccaaaggatagaggtaaaagacaccaaggaagctttagataaaatagaggaagaacaa------------aag---------------------aag---------------agccgg------caaaag---------------------------------acacagcaggcagcagct---------------------------------ggcacagga------------------------------------------------------------------------------------------aacagcagccaa------------------gccagccaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcagcctttatcacctagaactttgaatgcatgggtgaaggtagtagaa---gaaaagggttttaacccagaagtaatatccatgttctcagcattatcagagggagccaccccacaagatttaaatatgatgctaaatatagtagggggacaccaggcagcaatgcaaatgttaaaagacaccatcaacgaggaagctgcagaatgggataggacacatccagtacatgcagggcctattccaccaggccaaatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------aacactcctcctatc---ccagtgggagaaatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagattatgtagataggttctttaaaactctcagagcggaacaagctacacaggaggtaaaaaactggatgacagaaaccttgttagtc---caaaatgcgaatccagactgtaggtccattttaaaagcattagggtcaggagctacattagaagaaatgatgacagcatgccaaggagtgggaggacctagtcataaagcaagagttctggctgaggcaatg------------agccaagcacaa------------------------catgcaactataatgatgcagaga---ggcaat---tttaagggc---cagaaa---aga---attaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggttgttggaaatgcgggaaggaaggacatcaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---ccttccaccaacaag---------gga---aggccgggaaattttcctcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccgccagca---gac---tgggggatgggg---------------gaagagata---acctcatta------------------------ctgaaacaggaacag------------------------aaagacaag---------------------gaacatctt------cctcct---aca---gtttccctcaaatcactctttggcaacgacccattgtcccagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"GU564221",">Ref.01_AE.CN.05.05GX001.GU564221","Ref","01_AE","CN","05","05GX001","GU564221",41,2013,1,30,1474,1503,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgaccccttgtcacagtaa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttacggccagggggaaagaaaaaatataggctgaaacatttagtatgggcaagcagggagttagaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacagtcaactctcaagacaggatcagaagaacttaaatcattatttaatgcagtagcagtcctctattgcgtacaccaaaggatagatgtaaaagacaccagggaagctttagataaaatagaggaagtacaaaagaagagccagcaaaagacacagcaggcagcagctggcccaggaaacagcagcaaagtcagccaaaattatcctatagtgcaaaatgcacaaggacaaatggtacatcagcctgtatcacctagaactttgaatgcatgggtgaaagtagtagaagaaaagggttttagcccagaagtaatacccatgttcacagcattatcagaaggagccaccccacaagatttaaatatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagaaaccatcaatgaggaagctgcagaatgggatagggtacacccagtacatgcagggcctattccaccaggccagatgagggagccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgacaggcaatccacctatcccagtgggagacatctataaaaggtggataatcctgggattgaataaaatagtaagaatgtacagccctgttagcattttggacataagacaggggccaaaagaacccttcagagactatgtagataggttctataaaactctcagagcggaacaagctacacaggaggtaaaaaactggatgacagaaaccttgctagtccaaaatgcaaatccagactgtaagtccattttaaaagcattaggaacaggagctacattagaagagatgatgacagcatgccagggagtgggaggacctagccataaagcaagggttttggctgaggcaatgagcaacgtacaacaggtaaatgtaatgatgcagagaggcaattttaagggccaaaaaagaattaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggttgttggaaatgtgggcaggaaggacatcaaatgaaagactgcactgagagacaggctaattttttaggaaagctctggccttccaacaagggaaggccgggaaattttcctcagagcagaacagagccaacagccccgccagcagagaactgggggatgggggaagagataacctccttcctgaagcaggagcagaaagacaaggaatatcctcctcctcctccttcaatttccctcaaatcactctttggcaacgaccccttgtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttacggccagggggaaagaaaaaatataggctgaaacatttagtatgggcaagcagggagttagaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacagtcaactctcaagacaggatcagaagaacttaaatcattatttaatgcagtagcagtcctctattgcgtacaccaaaggatagatgtaaaagacaccagggaagctttagataaaatagaggaagtacaa------------aag---------------------aag---------------agccag------caaaag---------------------------------acacagcaggcagcagct---------------------------------ggcccagga------------------------------------------------------------------------------------------aacagcagcaaa------------------gtcagccaaaattatcctatagtgcaaaatgcacaaggacaaatggtacatcagcctgtatcacctagaactttgaatgcatgggtgaaagtagtagaa---gaaaagggttttagcccagaagtaatacccatgttcacagcattatcagaaggagccaccccacaagatttaaatatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagaaaccatcaatgaggaagctgcagaatgggatagggtacacccagtacatgcagggcctattccaccaggccagatgagggagccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------ggcaatccacctatc---ccagtgggagacatctataaaaggtggataatcctgggattgaataaaatagtaagaatgtacagccctgttagcattttggacataagacaggggccaaaagaacccttcagagactatgtagataggttctataaaactctcagagcggaacaagctacacaggaggtaaaaaactggatgacagaaaccttgctagtc---caaaatgcaaatccagactgtaagtccattttaaaagcattaggaacaggagctacattagaagagatgatgacagcatgccagggagtgggaggacctagccataaagcaagggttttggctgaggcaatg------------agcaacgtacaa------------------------caggtaaatgtaatgatgcagaga---ggcaat---tttaagggc---caaaaa---aga---attaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggttgttggaaatgtgggcaggaaggacatcaaatgaaagactgcact---------gag---agacaggctaattttttaggaaagctctgg---cct---tccaacaag---------gga---aggccgggaaattttcctcagagc------------------------------agaaca------gagccaacagcc---------------------------------------------------ccgccagca---gagaactgggggatgggg---------------gaagagata---acctccttc------------------------ctgaagcaggagcag------------------------aaagacaag---------------------gaatatcctcctcctcctcct---tca---atttccctcaaatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,10rev,12rev",6,2,4
"U54771",">Ref.01_AE.TH.90.CM240.U54771","Ref","01_AE","TH","90","CM240","U54771",42,2013,1,30,1483,1512,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgaccccttgtcacagtaa",1,30,1,30,1,30,1984,2013,1483,1512,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttgcggccagggggaagaaaaaaatataggctgaaacatttagtatgggcaagcagagagttagaaagattcgcacttaaccctagctttttagaaacagcagaaggatgtcaacaaataatagaacagttacagtcaactctcaagacaggattagaagaacttaaatcattatttaatacagtagcaaccctctggtgcgtacaccaaaggatagaggtaaaagacaccaaggaagctttagataaaatagaggaagtacaaaataagagccagcgaaagacacagcaggcagcagctggcacaggaagcagcagcaaagtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatggcacatcagcctttatcacctagaactttgaatgcatgggtgaaagtagtagaagaaaagggttttaacccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatttaaatatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagaaaccatcaatgaggaacctgcagaatgggatagggtacacccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgacaaacaatccacccatcccagtgggagacatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttctataaaactctcagagcggaacaagctacacaggaggtaaaaaactggatgacagaaaccttgctagtccaaaacgcgaatccagactgtaagtccattttaaaagcattaggaacaggagctacattagaagaaatgatgacagcatgccagggagtgggaggacctagccataaagcaagggttttggctgaagcaatgagccacgcacaacatgcaactataatgatgcagagaggcaatttcaagggccagaaaagaattaagtgcttcaactgtggtagagaaggacacctagccagaaattgcagggcccctagaaaacagggttgttggaaatgcgggaaggaaggacatcaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggccttccaacaagggaaggccggggaattttcctcagagcagaccagagccaacagccccaccagcagaaaactgggggatgggggaagagataacgggggaagagataacctccttaccgaagcaggagcagaaagacaaggaacatcctcctcctttagtttccctcaaatcactctttggcaacgaccccttgtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttgcggccagggggaagaaaaaaatataggctgaaacatttagtatgggcaagcagagagttagaaagattcgcacttaaccctagctttttagaaacagcagaaggatgtcaacaaataatagaacagttacagtcaactctcaagacaggattagaagaacttaaatcattatttaatacagtagcaaccctctggtgcgtacaccaaaggatagaggtaaaagacaccaaggaagctttagataaaatagaggaagtacaa------------aat---------------------aag---------------agccag------cgaaag---------------------------------acacagcaggcagcagct---------------------------------ggcacagga------------------------------------------------------------------------------------------agcagcagcaaa------------------gtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatggcacatcagcctttatcacctagaactttgaatgcatgggtgaaagtagtagaa---gaaaagggttttaacccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatttaaatatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagaaaccatcaatgaggaacctgcagaatgggatagggtacacccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------aacaatccacccatc---ccagtgggagacatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttctataaaactctcagagcggaacaagctacacaggaggtaaaaaactggatgacagaaaccttgctagtc---caaaacgcgaatccagactgtaagtccattttaaaagcattaggaacaggagctacattagaagaaatgatgacagcatgccagggagtgggaggacctagccataaagcaagggttttggctgaagcaatg------------agccacgcacaa------------------------catgcaactataatgatgcagaga---ggcaat---ttcaagggc---cagaaa---aga---attaagtgcttcaactgtggtagagaaggacacctagccagaaattgcagggcccctagaaaacagggttgttggaaatgcgggaaggaaggacatcaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------gga---aggccggggaattttcctcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gaaaactgggggatgggggaagagataacgggggaagagata---acctcctta------------------------ccgaagcaggagcag------------------------aaagacaag---------------------gaacatcct------cctcct---tta---gtttccctcaaatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,8rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,8rev,10rev,12rev",7,2,5
"AY271690",">Ref.02_AG.CM.99.pBD6_15.AY271690","Ref","02_AG","CM","99","pBD6_15","AY271690",43,2013,1,30,1477,1506,"atgggtgcgagagcgtcagtgttaagtggg","ctctttggcaacgacccttagttacagtaa",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagagcgtcagtgttaagtgggggaagattagatgcatgggagaaaattcggttaaggccagggggaaagaaaaaatatagactaaaacatttagtatgggcaagcagggagttggaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacaatcaactctcaagacaggatcagaagaacttaaatcattatataatgcagtagcagtcctttactgcgtacatcaaaggatagaggtaaaagacaccaaggaagctttagataaaatagaggaactgcaaaacaagagtaagcaaaaaacacagcaggcagcagcaaagacacagcaggcagcagctggcacaggatgcagccaaaattaccctatagtgcaaaatgcacaagggcaaatgacacaccagaatctgtcacctaggactttaaatgcatgggtgaaggtaatagaagagaaaggtttcagcccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatttaaatatgatgctaaacatagtggggggacaccaggcagcaatgcagatgttgaaagataccatcaatgaggaagctgcagaatgggacaggacacatccagtacatgcagggcctattccaccaggtcagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaatgggctggatgacaagcaatccacctatcccagtgggagacatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcatcttggacataaaacaagggccaaaagaaccctttagagattatgtagataggttctttaaaactttgagagctgaacaagctacgcaggaggtaaaaaactggatgacagaaaccttgctggtccaaaatgcaaatccagactgtaagtccattttaaaagcattaggagtaggggccacattagaagaaatgatgacagcatgccagggagtaggaggacctggccataaagcaagggttctggctgaggcaatgagtcaagtacaacaggcaggagtaatgatgcagagaagcaattttaggggccagagaacaataaagtgtttcaactgtggcaaagaaggacacctcgctagaaattgtaaggcccctaggaaaagaggctgttggaaatgtgggaaggagggacaccaaatgaaagactgcactgaaagacaggcgaattttttagggagaatctggccttccagcaaggggaggccaggcaattttcctcagagcagaccagagccaacagccccaccagcagagagcttggggatgggggaagagataccctcctccccgaagcaggaaccgagggacaaggaactataccctcctttagcttccctcaaatcactctttggcaacgacccttagttacagtaa","atgggtgcgagagcgtcagtgttaagtgggggaagattagatgcatgggagaaaattcggttaaggccagggggaaagaaaaaatatagactaaaacatttagtatgggcaagcagggagttggaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacaatcaactctcaagacaggatcagaagaacttaaatcattatataatgcagtagcagtcctttactgcgtacatcaaaggatagaggtaaaagacaccaaggaagctttagataaaatagaggaactgcaa------------aac---------------------aag---------------agtaag------caaaaa---------------------------------acacagcaggcagcagcaaagacacag------------caggcagcagctggcacagga------------------------------------------------------------------------------------------------------------------------tgcagccaaaattaccctatagtgcaaaatgcacaagggcaaatgacacaccagaatctgtcacctaggactttaaatgcatgggtgaaggtaatagaa---gagaaaggtttcagcccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatttaaatatgatgctaaacatagtggggggacaccaggcagcaatgcagatgttgaaagataccatcaatgaggaagctgcagaatgggacaggacacatccagtacatgcagggcctattccaccaggtcagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaatgggctggatgaca---------agcaatccacctatc---ccagtgggagacatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcatcttggacataaaacaagggccaaaagaaccctttagagattatgtagataggttctttaaaactttgagagctgaacaagctacgcaggaggtaaaaaactggatgacagaaaccttgctggtc---caaaatgcaaatccagactgtaagtccattttaaaagcattaggagtaggggccacattagaagaaatgatgacagcatgccagggagtaggaggacctggccataaagcaagggttctggctgaggcaatg------------agtcaagtacaa------------------------caggcaggagtaatgatgcagaga---agcaat---tttaggggc---cagaga---aca---ataaagtgtttcaactgtggcaaagaaggacacctcgctagaaattgtaaggcccctaggaaaagaggctgttggaaatgtgggaaggagggacaccaaatgaaagactgcact---------gaa---agacaggcgaattttttagggagaatctgg---cct---tccagcaag---------ggg---aggccaggcaattttcctcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttggggatgggg---------------gaagagata---ccctcctcc------------------------ccgaagcaggaaccg------------------------agggacaag---------------------gaactatac------cctcct---tta---gcttccctcaaatcactctttggcaacgacccttagttacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,5fw,11fw,12rev","1fw,5fw,11fw","2rev,4rev,12rev",6,3,3
"AB485636",">Ref.02_AG.LR.x.POC44951.AB485636","Ref","02_AG","LR","x","POC44951","AB485636",44,2013,1,30,1459,1488,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgacccttagtcacagtaa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagagaattaggttaaggccggggggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagttggaaagattcgcaattaaccctggccttttagaaacagcagaagggtgtcaacaaataatggagcagttacaatcaactctcagtacaggatcagaggaacttaaatcattatttaatacaatagcaaccctgtggtgtgtacatcgaaggttagacataacagacaccaaggaagccttagataaaatagaggaaatgcaaaataagagcaagcaaaagacacagcaggcagcagctgccacaggaagcagcagccaaaattaccctatagtgcaaaatgcacaaggacaaatgacacatcagtccatatcacctaggactttgaatgcatgggtaaaggcaatagaagaaaaggcttttagcccagaagtaatacctatgtttacagcattatcagagggagccaccccacaagatttaaatatgatgctaaacatagtggggggacaccaggcagcaatgcagatgctaaaagataccatcaatgaggaagctgcagaatgggacagggtacatccagtacaggcagggcctattccaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaagaacaaataggatggatgacaagcaatccacctatcccagtgggagaaatctataaaagatggatagtcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccgaaagaaccctttagagattatgtagataggttctttaaaactttgagagctgaacaagctacgcaggaggtaaaaaactggatgacagaaaccttgctggtccaaaatgcgaatccagactgtaagtccattctaaaagcattaggatcaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagggttttggctgaggcaatgagtcaagtacaacaggccaacataatgatgcaaagaggcaattttaggggccggagaacaataaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcaaggcccctaggaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtactgagagacaggctaattttttagggaaaatttggccttccagcaaagggaggccaggaaactttcctcagagcagaccggaaccaacagccccaccggcagagagctttgggatgggggaagagataacctcccctccgaagcaggaaccgagggacaagggactatatcctcctttaacttccctcaaatcactctttggcaacgacccttagtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagagaattaggttaaggccggggggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagttggaaagattcgcaattaaccctggccttttagaaacagcagaagggtgtcaacaaataatggagcagttacaatcaactctcagtacaggatcagaggaacttaaatcattatttaatacaatagcaaccctgtggtgtgtacatcgaaggttagacataacagacaccaaggaagccttagataaaatagaggaaatgcaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------acacagcaggcagcagct---------------------------------gccacagga------------------------------------------------------------------------------------------------agc---------------------agcagccaaaattaccctatagtgcaaaatgcacaaggacaaatgacacatcagtccatatcacctaggactttgaatgcatgggtaaaggcaatagaa---gaaaaggcttttagcccagaagtaatacctatgtttacagcattatcagagggagccaccccacaagatttaaatatgatgctaaacatagtggggggacaccaggcagcaatgcagatgctaaaagataccatcaatgaggaagctgcagaatgggacagggtacatccagtacaggcagggcctattccaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------agcaatccacctatc---ccagtgggagaaatctataaaagatggatagtcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccgaaagaaccctttagagattatgtagataggttctttaaaactttgagagctgaacaagctacgcaggaggtaaaaaactggatgacagaaaccttgctggtc---caaaatgcgaatccagactgtaagtccattctaaaagcattaggatcaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagggttttggctgaggcaatg------------agtcaagtacaa------------------------caggccaacataatgatgcaaaga---ggcaat---tttaggggc---cggaga---aca---ataaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcaaggcccctaggaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtact---------gag---agacaggctaattttttagggaaaatttgg---cct---tccagcaaa---------ggg---aggccaggaaactttcctcagagc------------------------------agaccg------gaaccaacagcc---------------------------------------------------ccaccggca---gagagctttgggatgggg---------------gaagagata---acctcccct------------------------ccgaagcaggaaccg------------------------agggacaag---------------------ggactatat------cctcct---tta---acttccctcaaatcactctttggcaacgacccttagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"L39106",">Ref.02_AG.NG.x.IBNG.L39106","Ref","02_AG","NG","x","IBNG","L39106",45,2013,1,30,1459,1488,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgacccttagttacagtaa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattcggttaaggccagggggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctggaaagattcgcacttaaccctggccttttagaaacagcagagggatgtcaacaactaatggaacagttacaatcagctctcaggacaggatcagaagaacttaaatcattatttaatacaatagcaaccctttggtgcgtgcatcaaaggatagacataaaagacaccaaggaagccttagataaaatggaggaaatacaaaataagagcaagcaaaaggtacagcagacagcagctgccacaggaagcagcagccaaaattaccctatagtgcaaaatgccaaagggcaaatgacacatcagtccatgtcacctagaactttaaatgcatgggtgaaagtaatagaagaaaagggtttcagcccagaagtaatacccatgttttcagcattatcagagggagccaccccgcaagatttaaatatgatgctaaacatagtggggggacaccaggcagcaatgcagatgttaaaagataccatcaatgaggaagctgcagaatgggatagggtacatccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgacaagcaatccacctatcccagtgggagaaatctataaaagatggatagtcctgggattaaataaaatagtaaggatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagattatgtagataggttctttaaaactttgagagctgaacaagctacgcaggaggtaaaaaactggatgacagaaaccttgctggtccaaaatgcgaatccagactgtaagtccattttaagagcattaggaacaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagggttttggctgaggcaatgagtcaagtacaacaggccaacgtaatgatgcagagaggcaattttaggggccagagaacaataaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcaaggcccctaggaaaaggggctgttggaaatgtgggaaagaaggacaccaaatgaaagactgtactgagagacaggctaattttttagggaaaatttggccttccagcaaggggaggccaggaaattttcctcagagcagaccggaaccaacagctccaccagcagagagctttgggatgggggaagagatacctccctctccacagcaggaaccgagggacaaggggctatatcctcctttaacttccctcaaatcactctttggcaacgacccttagttacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattcggttaaggccagggggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctggaaagattcgcacttaaccctggccttttagaaacagcagagggatgtcaacaactaatggaacagttacaatcagctctcaggacaggatcagaagaacttaaatcattatttaatacaatagcaaccctttggtgcgtgcatcaaaggatagacataaaagacaccaaggaagccttagataaaatggaggaaatacaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------gtacagcagacagcagct---------------------------------gccacagga------------------------------------------------------------------------------------------------agc---------------------agcagccaaaattaccctatagtgcaaaatgccaaagggcaaatgacacatcagtccatgtcacctagaactttaaatgcatgggtgaaagtaatagaa---gaaaagggtttcagcccagaagtaatacccatgttttcagcattatcagagggagccaccccgcaagatttaaatatgatgctaaacatagtggggggacaccaggcagcaatgcagatgttaaaagataccatcaatgaggaagctgcagaatgggatagggtacatccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------agcaatccacctatc---ccagtgggagaaatctataaaagatggatagtcctgggattaaataaaatagtaaggatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagattatgtagataggttctttaaaactttgagagctgaacaagctacgcaggaggtaaaaaactggatgacagaaaccttgctggtc---caaaatgcgaatccagactgtaagtccattttaagagcattaggaacaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagggttttggctgaggcaatg------------agtcaagtacaa------------------------caggccaacgtaatgatgcagaga---ggcaat---tttaggggc---cagaga---aca---ataaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcaaggcccctaggaaaaggggctgttggaaatgtgggaaagaaggacaccaaatgaaagactgtact---------gag---agacaggctaattttttagggaaaatttgg---cct---tccagcaag---------ggg---aggccaggaaattttcctcagagc------------------------------agaccg------gaaccaacagct---------------------------------------------------ccaccagca---gagagctttgggatgggg---------------gaagagata---cctccctct------------------------ccacagcaggaaccg------------------------agggacaag---------------------gggctatat------cctcct---tta---acttccctcaaatcactctttggcaacgacccttagttacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,3fw,4rev,10rev,11fw,12rev","1fw,3fw,11fw","4rev,10rev,12rev",6,3,3
"AF193276",">Ref.03_AB.RU.97.KAL153_2.AF193276","Ref","03_AB","RU","97","KAL153_2","AF193276",46,2013,1,30,1468,1497,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcgacgaccccttgtcacagtaa",1,30,1,30,1,30,1984,2013,1468,1497,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaaggaaaaatatagaataaaacacctagtatgggcaagcagggagctggaaagattcgcgcttaaccctagccttttagaaacatcagaaggatgtcaacaaatactggaacagttacaaccaactctcaagacaggatcagaagaacttaaatcattatataatacagtagcaaccctctattgtgtacatcaacggatagagataaaagacaccaaggaagctttagataaaatagaggaaatacaaaataagagcaagcaaaagacccaacaggcagcaactggcacaggaagcagcagcaaggtcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatgacacaccagtccatgtcacctaggactttgaatgcatgggtgaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttttcagcattgtcagagggagccaccccacaagatttaaacatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttgaaagataccatcaatgaggaagctgctgaatgggataggttacatccagcacaggcagggccttttccaccagggcagatgagagaaccaaggggaagtgacatagcaggaagtagtagtacccttcaagaacaaataggatggatgacaagcaacccacctatcccagtgggagacatctataaaagatggataatcctaggattaaataagatagtaagaatgtatagccctgttagcattttagacataagacaagggccaaaagaacccttcagagactatgtagataggttctttaaaactcttagagctgagcaagctacacaggatgtaaagaactggatgacagaaaccctgctggtccaaaatgcaaatccagattgtaaaaccattttaagagcattaggatcaggggctacattagaagaaatgatgacagtatgccagggagtgggaggacccggccataaagcaagggttttggccgaggcaatgagtcaagtacaaaatgcaaacataatgatgcagaaaagtaattttaggggcccaaaaagaattaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaaggccatcaaatgaaagactgcactgagagacaggctaattttttagggagaatttggccttccagcaaagggaggccaggaaattttcctcagagcagaccagagccatcagccccaccagcagaaaactttgggatgggggaagagataaccccctccctgaaacaggaacagaaggacagggaacagcatcctccttcaatttccctcaaatcactctttggcgacgaccccttgtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaaggaaaaatatagaataaaacacctagtatgggcaagcagggagctggaaagattcgcgcttaaccctagccttttagaaacatcagaaggatgtcaacaaatactggaacagttacaaccaactctcaagacaggatcagaagaacttaaatcattatataatacagtagcaaccctctattgtgtacatcaacggatagagataaaagacaccaaggaagctttagataaaatagaggaaatacaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------acccaacaggcagcaact---------------------------------ggcacagga------------------------------------------------------------------------------------------agcagcagcaag------------------gtcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatgacacaccagtccatgtcacctaggactttgaatgcatgggtgaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttttcagcattgtcagagggagccaccccacaagatttaaacatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttgaaagataccatcaatgaggaagctgctgaatgggataggttacatccagcacaggcagggccttttccaccagggcagatgagagaaccaaggggaagtgacatagcaggaagtagtagtacccttcaagaacaaataggatggatgaca---------agcaacccacctatc---ccagtgggagacatctataaaagatggataatcctaggattaaataagatagtaagaatgtatagccctgttagcattttagacataagacaagggccaaaagaacccttcagagactatgtagataggttctttaaaactcttagagctgagcaagctacacaggatgtaaagaactggatgacagaaaccctgctggtc---caaaatgcaaatccagattgtaaaaccattttaagagcattaggatcaggggctacattagaagaaatgatgacagtatgccagggagtgggaggacccggccataaagcaagggttttggccgaggcaatg------------agtcaagtacaa------------------------aatgcaaacataatgatgcagaaa---agtaat---tttaggggc---ccaaaa---aga---attaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaaggccatcaaatgaaagactgcact---------gag---agacaggctaattttttagggagaatttgg---cct---tccagcaaa---------ggg---aggccaggaaattttcctcagagc------------------------------agacca------gagccatcagcc---------------------------------------------------ccaccagca---gaaaactttgggatgggg---------------gaagagata---accccctcc------------------------ctgaaacaggaacag------------------------aaggacagg---------------------gaacagcat------cctcct---tca---atttccctcaaatcactctttggcgacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"AF049337",">Ref.04_cpx.CY.94.94CY032_3.AF049337","Ref","04_cpx","CY","94","94CY032_3","AF049337",47,2013,1,30,1474,1503,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcagcgaccccttgtcacaataa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaggattcggttaaggccagggggaaagaaaaaatatagactgaaacatctagtatgggcaagcagagagttggaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaattaatggaacagttacaatcaactctcaaaacaggatcagaagaacttagatcattatataatactataacaaccctctggtgcgtacatcaaagaatagatgtacaagacaccaaggaagctttagataaaatagaggaaatacaaagtaagagcaagcaaaagacacagcaggcagcagctgccgcaggaggtagcagcaatgtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcagagcatttcacctagaactttgaatgcatgggtaaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatttgaacatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagataccatcaatgaggaagctgcagactgggacaggacacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaagaacaaataggatggatgacaagcaacccacctgtcccagtgggagaaatctataaaagatggataatcttggggttaaataaaatagtaagaacgtatagccccattagcatcttggacataagacaaggaccaaaagaacccttcagagattatgtagataggttctttaaatgtctcagagcagaacaagctacccaggaggtgaaaaattggatgacagaaaccctgctggtccaaaatgcgaatccagactgtaagtccatcttaaaagcattaggaacaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagagttttagctgaggcaatgagccaggcatcaaatgcagcagcagccataatgatgcagaaaagcaaatttaagggccaaagaagaactattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgctggaagtgtggaaaggagggacatcaaatgaaagactgcactgagagacaggctaattttttagggagaatgtggccttccagcaaagggaggccaggaaattttcttcagaacaggccagagccaacagccccgcccgcggaatgcttagagaggaaagaggagacaacctcctctctgaagcaggaaccgagggacaaggaactatatcctttaacttccctcaaatcactctttggcagcgaccccttgtcacaataa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaggattcggttaaggccagggggaaagaaaaaatatagactgaaacatctagtatgggcaagcagagagttggaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaattaatggaacagttacaatcaactctcaaaacaggatcagaagaacttagatcattatataatactataacaaccctctggtgcgtacatcaaagaatagatgtacaagacaccaaggaagctttagataaaatagaggaaatacaa------------agt---------------------aag---------------agcaag------caaaag---------------------------------acacagcaggcagcagct---------------------------------gccgcagga------------------------------------------------------------------------------------------ggtagcagcaat------------------gtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcagagcatttcacctagaactttgaatgcatgggtaaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatttgaacatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagataccatcaatgaggaagctgcagactgggacaggacacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggataatcttggggttaaataaaatagtaagaacgtatagccccattagcatcttggacataagacaaggaccaaaagaacccttcagagattatgtagataggttctttaaatgtctcagagcagaacaagctacccaggaggtgaaaaattggatgacagaaaccctgctggtc---caaaatgcgaatccagactgtaagtccatcttaaaagcattaggaacaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagagttttagctgaggcaatg------------agccaggcatcaaatgca------------------gcagcagccataatgatgcagaaa---agcaaa---tttaagggc---caaaga---agaactattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgctggaagtgtggaaaggagggacatcaaatgaaagactgcact---------gag---agacaggctaattttttagggagaatgtgg---cct---tccagcaaa---------ggg---aggccaggaaattttcttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccgcccgcg---gaatgcttagagaggaaa---------------gaggagaca---acctcctct------------------------ctgaagcaggaaccg------------------------agggacaag---------------------gaactatat---------cct---tta---acttccctcaaatcactctttggcagcgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"AF119820",">Ref.04_cpx.GR.91.GR11_97PVCH.AF119820","Ref","04_cpx","GR","91","GR11_97PVCH","AF119820",48,2013,1,30,1474,1503,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaaccaccccttgtcacaataa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattggatgcatgggagaggattcggttaaggccagggggaaagaaaaaatatagactgaaacatctagtatgggcaagcagggagttggaaagattcgcacttaaccctggccttttagaaacagcagagggatgtcaacaattaatggaacagttacaaccaactctcagaacaggatcagaagaagttaaatcattatttaatactttagcaaccctctggtgtgtacatcaacgaatagatgtaaaagacaccaaggaagctttagataaagtagaggaagtgcaaaagaagagcaagcaaaagacacagcaggcagcagctgacacaggaggtagcagcaaggtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcaggccatgtcacctagaactttgaatgcatgggtgaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatttaaacatgatgctaaatatagtggggggacatcaggcagcaatgcaaatgttaaaagataccatcaatgaggaagcttcagaatgggacagggcacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgacaagcaacccacctatcccagtaggagaaatctataaaagatggataatcctgggattaaataaaatagttagaatgtatagccctgtcagcatcttggacataaggcaaggaccaaaagaacccttcagagattatgtagataggttctttaaatgtctcagagcagaacaagctacacaggaggtaaaaaattggatgacagaaaccttgctggtccaaaatgcgaatccagactgtaagtccatcttaaaagcattaggaacaggggctacattagaagagatgatgacagcatgtcagggagtgggaggacccgcccataaagcaagagttttagctgaggcaatgagccaggcatcaaatgcagcagcagccataatgatgcagaaaagcaattttaggggccagaaaagaattattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaggggccgctggaaatgtggaaaggaaggacatcaaatgaaagactgcactgagagacaggctaattttttagggagaatgtggccttccagcaaaggaaggccggggaattttcttcagagcaggccagagccaacagccccacccgcagagagcttagagatgaaagaggagacaacctcctctccgaagcaggaaccgagggacaaggaactatatcctttaacttccctcaaatcactctttggcaaccaccccttgtcacaataa","atgggtgcgagagcgtcagtattaagtgggggaaaattggatgcatgggagaggattcggttaaggccagggggaaagaaaaaatatagactgaaacatctagtatgggcaagcagggagttggaaagattcgcacttaaccctggccttttagaaacagcagagggatgtcaacaattaatggaacagttacaaccaactctcagaacaggatcagaagaagttaaatcattatttaatactttagcaaccctctggtgtgtacatcaacgaatagatgtaaaagacaccaaggaagctttagataaagtagaggaagtgcaa------------aag---------------------aag---------------agcaag------caaaag---------------------------------acacagcaggcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------ggtagcagcaag------------------gtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcaggccatgtcacctagaactttgaatgcatgggtgaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatttaaacatgatgctaaatatagtggggggacatcaggcagcaatgcaaatgttaaaagataccatcaatgaggaagcttcagaatgggacagggcacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------agcaacccacctatc---ccagtaggagaaatctataaaagatggataatcctgggattaaataaaatagttagaatgtatagccctgtcagcatcttggacataaggcaaggaccaaaagaacccttcagagattatgtagataggttctttaaatgtctcagagcagaacaagctacacaggaggtaaaaaattggatgacagaaaccttgctggtc---caaaatgcgaatccagactgtaagtccatcttaaaagcattaggaacaggggctacattagaagagatgatgacagcatgtcagggagtgggaggacccgcccataaagcaagagttttagctgaggcaatg------------agccaggcatcaaatgca------------------gcagcagccataatgatgcagaaa---agcaat---tttaggggc---cagaaa---agaattattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaggggccgctggaaatgtggaaaggaaggacatcaaatgaaagactgcact---------gag---agacaggctaattttttagggagaatgtgg---cct---tccagcaaa---------gga---aggccggggaattttcttcagagc------------------------------aggcca------gagccaacagcc---------------------------------------------------ccacccgca---gagagcttagagatgaaa---------------gaggagaca---acctcctct------------------------ccgaagcaggaaccg------------------------agggacaag---------------------gaactatat---------cct---tta---acttccctcaaatcactctttggcaaccaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,7rev,10rev,12rev",6,2,4
"AF119819",">Ref.04_cpx.GR.97.GR84_97PVMY.AF119819","Ref","04_cpx","GR","97","GR84_97PVMY","AF119819",49,2013,1,30,1468,1497,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcagcgaccccttgtcacgataa",1,30,1,30,1,30,1984,2013,1468,1497,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaagattagatgcatgggagaagattcggttaaggccagggggaaagaaaagatatagaataaaacatctaatatgggcaagcagagagttggaaagattcgcacttaaccctggcctgttagaaacagcagaaggatgtcagcaattaatggaacagttacaatcaactctcaaaacaggatcagaggaacttaaatcgttatttaatttaatagcaaccctctggtgcgtacatcaaagaatagaagtaaaagacaccaaggaagctctagataaagtagaggaaatgcaaaataagagcaagcaaaagacacagcaggcagcagctggcaatagcagcaatgtcagccaaaattaccctatagcgcaaaatgcacaagggcaaatggtacatcagagtatatcgcctagaactctgaatgcatgggtgaaagtagtagaagaaaagggtttcagcccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatctaaacatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggacagggtacatccagcacatgcagggcctaacccagcaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaagtaggatggatgacaagcaacccacctatcccagtgggagatatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcatcttggacataagacaagggacaaaagaacccttcagagattatgtagatagattctttaaatgtctcagagcagaacaagctacccaggatgtaaaaaattggatgacagaaaccttgctggtccaaaatgcaaatccagactgtaagtctatcttaaaagcattaggaaccggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccagccacaaagcaagagttttagctgaggcaatgagccaggcatcaagtgcagcagcagccataatgatgcagaaaagcaattttaagggcccgagaagaagtattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgctggaaatgtggaaaggagggacatcagatgaaagactgccctgagagacaggctaattctttagggagaatgtggccttccagcaaggggaggccaggaaattttcttcagagcaggacagagccaacagccccgcccgcagagagcttcgagatgaaagaggagacaacctcctctccgaagcaggaacagagggacaaggaactatatcccataacttccctcaaatcactctttggcagcgaccccttgtcacgataa","atgggtgcgagagcgtcagtattaagtgggggaagattagatgcatgggagaagattcggttaaggccagggggaaagaaaagatatagaataaaacatctaatatgggcaagcagagagttggaaagattcgcacttaaccctggcctgttagaaacagcagaaggatgtcagcaattaatggaacagttacaatcaactctcaaaacaggatcagaggaacttaaatcgttatttaatttaatagcaaccctctggtgcgtacatcaaagaatagaagtaaaagacaccaaggaagctctagataaagtagaggaaatgcaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------acacagcaggcagcagct---------------------------------ggc------------------------------------------------------------------------------------------------aatagcagcaat------------------gtcagccaaaattaccctatagcgcaaaatgcacaagggcaaatggtacatcagagtatatcgcctagaactctgaatgcatgggtgaaagtagtagaa---gaaaagggtttcagcccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatctaaacatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggacagggtacatccagcacatgcagggcctaacccagcaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaagtaggatggatgaca---------agcaacccacctatc---ccagtgggagatatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcatcttggacataagacaagggacaaaagaacccttcagagattatgtagatagattctttaaatgtctcagagcagaacaagctacccaggatgtaaaaaattggatgacagaaaccttgctggtc---caaaatgcaaatccagactgtaagtctatcttaaaagcattaggaaccggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccagccacaaagcaagagttttagctgaggcaatg------------agccaggcatcaagtgca------------------gcagcagccataatgatgcagaaa---agcaat---tttaagggc---ccgaga---agaagtattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgctggaaatgtggaaaggagggacatcagatgaaagactgccct---------gag---agacaggctaattctttagggagaatgtgg---cct---tccagcaag---------ggg---aggccaggaaattttcttcagagc------------------------------aggaca------gagccaacagcc---------------------------------------------------ccgcccgca---gagagcttcgagatgaaa---------------gaggagaca---acctcctct------------------------ccgaagcaggaacag------------------------agggacaag---------------------gaactatat---------ccc---ata---acttccctcaaatcactctttggcagcgaccccttgtcacgataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,9fw,10rev,11fw,12rev","1fw,9fw,11fw","2rev,10rev,12rev",6,3,3
"AF076998",">Ref.05_DF.BE.93.VI961.AF076998","Ref","05_DF","BE","93","VI961","AF076998",50,2013,1,30,1477,1506,"atgggtgcgagagcgtcagtattaagcggg","ctttttggcaacgacccgttgtcacaataa",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttacggccaggaggaaagaaaaaatatagactaaaacatatagtatgggcaagcagggagctagaacgcttcgcaattaatcctggccttttagagacatcagaaggctgtaaacaaataatagcacagctacaaccagctattcagacaggatcagaagaacttagatcattatataatacagtagcaaccctctattgtgtacatgagaagatagaggtgaaagacaccaaggaagctttagaaaagatagaggaagaacaaaacaaaagtaaaagtaaaagggcacagcaagcagaagctggcacaaagaacagcggcccggtcagccaaaattttcctatagtgcagaacctacaggggcaaatggtacaccaggccctatcacctagaactttgaatgcatgggtaaaagtaatagaagaaaaagctttcagcccagaagtaatacccatgtttacagcactatcggaaggagccaccccacaagatttaaacactatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagggtacatccagcacaggcagggcctattgcaccaggccaaataagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataacatggatgacaaacaacccacctatcccagtaggagaaatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacagggaccaaaggaaccttttagagactatgtagaccggttctataaaactctaagagccgagcaagcctcacaggatgtaaaaaactggatgacagaaaccttgttggtccaaaatgcaaacccagattgtaaaactatcttaaaagcactaggaccacaggcaacactagaagaaatgatgacagcatgtcaaggagtgggggggcccagccataaagcaagagttttggctgaggcaatgagccaagcaacaggatcacctgcagtaatgatgcagagaggcaattttaagggcccaagaaaaagtattaagtgtttcaactgtggcaaagaagggcacacagcaaaaaattgcagggcccctaggaaaaggggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcattgagggacaggctaattttttagggagagtttggctttcccacaagggaaggccagggaatttcctccagagcaggccagaaccctcagccccaccagcagagagcttcgggtttggagaggagataaccccctcgccgaagcaggagcagaaggacgaggggaagtaccctcccttagcttccctcaaatcactttttggcaacgacccgttgtcacaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttacggccaggaggaaagaaaaaatatagactaaaacatatagtatgggcaagcagggagctagaacgcttcgcaattaatcctggccttttagagacatcagaaggctgtaaacaaataatagcacagctacaaccagctattcagacaggatcagaagaacttagatcattatataatacagtagcaaccctctattgtgtacatgagaagatagaggtgaaagacaccaaggaagctttagaaaagatagaggaagaacaa------------aac---------------------aaa---------------agtaaaagt---aaaagg---------------------------------gcacagcaagcagaagct---------------------------------ggcacaaag------------------------------------------------------------------------------------------aacagcggcccg------------------gtcagccaaaattttcctatagtgcagaacctacaggggcaaatggtacaccaggccctatcacctagaactttgaatgcatgggtaaaagtaatagaa---gaaaaagctttcagcccagaagtaatacccatgtttacagcactatcggaaggagccaccccacaagatttaaacactatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagggtacatccagcacaggcagggcctattgcaccaggccaaataagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataacatggatgaca---------aacaacccacctatc---ccagtaggagaaatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacagggaccaaaggaaccttttagagactatgtagaccggttctataaaactctaagagccgagcaagcctcacaggatgtaaaaaactggatgacagaaaccttgttggtc---caaaatgcaaacccagattgtaaaactatcttaaaagcactaggaccacaggcaacactagaagaaatgatgacagcatgtcaaggagtgggggggcccagccataaagcaagagttttggctgaggcaatg------------agccaagcaacagga---------------------tcacctgcagtaatgatgcagaga---ggcaat---tttaagggc---ccaaga---aaaagtattaagtgtttcaactgtggcaaagaagggcacacagcaaaaaattgcagggcccctaggaaaaggggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcatt---------gag---ggacaggctaattttttagggagagtttgg---ctt---tcccacaag---------gga---aggccagggaatttcctccagagc------------------------------aggcca------gaaccctcagcc---------------------------------------------------ccaccagca---gagagcttcgggtttgga---------------gaggagata---accccctcg------------------------ccgaagcaggagcag------------------------aaggacgag---------------------gggaagtac------cctccc---tta---gcttccctcaaatcactttttggcaacgacccgttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,11fw,12rev","1fw,11fw","4rev,7rev,12rev",5,2,3
"AF193253",">Ref.05_DF.BE.x.VI1310.AF193253","Ref","05_DF","BE","x","VI1310","AF193253",51,2013,1,30,1480,1509,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccgttgtcacaataa",1,30,1,30,1,30,1984,2013,1480,1509,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttacggccaggaggaaagaaaaagtatagactaaaacatttagtatgggcaagcagggagctagaacgatttgcacttaatcctggccttttagagacatcagaaggctgtaaacaaataataagccagttacaaccagctattcagacaggaacagaagaacttaaatcattatacaatacagtagcaaccctctattgtgtccatgaaaggatagaggtgaaagacaccaaggaagctttagaaaagatagaggaagagcaaaacaaaagtaaaagaaaaaaggcacagcaagcagaagctggcgcagggaacagcagccaggccagccaaaattatcctatagtgcagaacatacaggggcaaatggtacaccaggccctatcacctagaactttgaacgcatgggtaaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttttcagcattatcggagggagccaccccacaagatttaaacaccatgctaaacacagtggggggacaccaagcagccatgcaaatgttaaaagagactatcaatgaggaagctgcagaatgggataggttacatccagtgcaggcagggcctgtggcaccaggccaaatgagagatccaaggggaagtgatatagcaggaactaccagcacccttcaggaacaaatagcatggatgacaaacaacccacctattccagtaggagaaatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacagggaccaaaggaaccttttagagactatgtagaccggttctataaaactctaagagccgagcaagctacacaggaagtaaaaaactggatgacagaaaccttgttggtccaaaatgcaaacccagattgtaaaactatcttaaaagcattaggacaacaggctacactagaagaaatgatgacagcatgtcagggagtgggggggcccagccataaagcaagagttttggctgaggcaatgagccaagcaacaaattcagctgctacagcaatgatgcagagaggcaattttaagggcccaagaaaaattattaagtgtttcaactgtggtaaagaagggcacatagccaaaaattgtagggctcctggaaaaaagggctgttggaaatgtgggagagaaggacaccaaatgaaagactgcactgagaggcaggctaattttttagggaaagtttggccttcccacaaggggaggccagggaacttcctccagagcagaccggagccctcagccccgccagcagagagcttcaggtttggggaggagatagcctcctctccgaagcaggagcagaaggacgagggactgtaccctcccttagcttccctcaaatcactctttggcaacgacccgttgtcacaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttacggccaggaggaaagaaaaagtatagactaaaacatttagtatgggcaagcagggagctagaacgatttgcacttaatcctggccttttagagacatcagaaggctgtaaacaaataataagccagttacaaccagctattcagacaggaacagaagaacttaaatcattatacaatacagtagcaaccctctattgtgtccatgaaaggatagaggtgaaagacaccaaggaagctttagaaaagatagaggaagagcaa------------aac---------------------aaa---------------agtaaaaga---aaaaag---------------------------------gcacagcaagcagaagct---------------------------------ggcgcaggg------------------------------------------------------------------------------------------aacagcagccag------------------gccagccaaaattatcctatagtgcagaacatacaggggcaaatggtacaccaggccctatcacctagaactttgaacgcatgggtaaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttttcagcattatcggagggagccaccccacaagatttaaacaccatgctaaacacagtggggggacaccaagcagccatgcaaatgttaaaagagactatcaatgaggaagctgcagaatgggataggttacatccagtgcaggcagggcctgtggcaccaggccaaatgagagatccaaggggaagtgatatagcaggaactaccagcacccttcaggaacaaatagcatggatgaca---------aacaacccacctatt---ccagtaggagaaatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacagggaccaaaggaaccttttagagactatgtagaccggttctataaaactctaagagccgagcaagctacacaggaagtaaaaaactggatgacagaaaccttgttggtc---caaaatgcaaacccagattgtaaaactatcttaaaagcattaggacaacaggctacactagaagaaatgatgacagcatgtcagggagtgggggggcccagccataaagcaagagttttggctgaggcaatg------------agccaagcaacaaattca------------------gctgctacagcaatgatgcagaga---ggcaat---tttaagggc---ccaaga---aaaattattaagtgtttcaactgtggtaaagaagggcacatagccaaaaattgtagggctcctggaaaaaagggctgttggaaatgtgggagagaaggacaccaaatgaaagactgcact---------gag---aggcaggctaattttttagggaaagtttgg---cct---tcccacaag---------ggg---aggccagggaacttcctccagagc------------------------------agaccg------gagccctcagcc---------------------------------------------------ccgccagca---gagagcttcaggtttggg---------------gaggagata---gcctcctct------------------------ccgaagcaggagcag------------------------aaggacgag---------------------ggactgtac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccgttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"AY227107",">Ref.05_DF.ES.99.X492.AY227107","Ref","05_DF","ES","99","X492","AY227107",52,2013,1,30,1477,1506,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccattgtcacaataa",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaagattcggctacggccaggaggaaagaaaaaatatagactaaaacatatagtatgggcaagcagggagctagaacgctttgcacttaatcctggccttttagagacatcagaaggctgtaaacaaataataagacagttacaaccatctattcagacaggatcagaagaacttagatctttatataatacagtagcaaccctctattgtgtccatgaaaggatagaggtgaaagacaccaaagaagctttagaaaagatggaggaagaacaaaacaaaagtaaaagtaaaaaggcacagcaagcagaagctggcgcaaggaacagcagtcaggtcagtcaaaattatcctatagtgcagaacatacaggggcaaatggtacaccaacccctatcaccaagaactttgaacgcatgggtaaaagtaatagaagaaaaggctttcagcccagaagtgatacccatgttttcagcactatcggaaggagccaccccacaagatttaaacactatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggataggttacatccagtgcatgcagggcctattgcaccaggccaaataagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcatggatgacaaacaacccacctatcccagtaggagaaatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacagggaccaaaggaaccttttagagactatgtagacaggttctataaaactctaagagcagagcaagctacacaggaggtaaaaaactggatgacagaaaccttgttgatccaaaatgcaaacccagattgtaagactatcctaaaagcattaggaccacaggcaacactagaagaaatgatgacagcatgtcagggagtaggggggcccagccataaagcaagagtcttggctgaggcaatgagccaagcaacaaaagcaactgcagtaatgatgcagagaggtaattttaagggcccaagaagaagtattaaatgtttcaactgtggcaaagaagggcatacagcaaaaaattgcagggctcctaggaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggaaaatctggccttcccacagggggaggccagggaactttctccagagcaggccagaaccctcagccccaccagcagagagtttcgggtttggagaggagataaccccctctccgaagcaggagaagaaggacgaggggctgtaccctcccttagcctccctcaaatcactctttggcaacgacccattgtcacaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaagattcggctacggccaggaggaaagaaaaaatatagactaaaacatatagtatgggcaagcagggagctagaacgctttgcacttaatcctggccttttagagacatcagaaggctgtaaacaaataataagacagttacaaccatctattcagacaggatcagaagaacttagatctttatataatacagtagcaaccctctattgtgtccatgaaaggatagaggtgaaagacaccaaagaagctttagaaaagatggaggaagaacaa------------aac---------------------aaa---------------agtaaaagt---aaaaag---------------------------------gcacagcaagcagaagct---------------------------------ggcgcaagg------------------------------------------------------------------------------------------aacagcagtcag------------------gtcagtcaaaattatcctatagtgcagaacatacaggggcaaatggtacaccaacccctatcaccaagaactttgaacgcatgggtaaaagtaatagaa---gaaaaggctttcagcccagaagtgatacccatgttttcagcactatcggaaggagccaccccacaagatttaaacactatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggataggttacatccagtgcatgcagggcctattgcaccaggccaaataagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcatggatgaca---------aacaacccacctatc---ccagtaggagaaatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacagggaccaaaggaaccttttagagactatgtagacaggttctataaaactctaagagcagagcaagctacacaggaggtaaaaaactggatgacagaaaccttgttgatc---caaaatgcaaacccagattgtaagactatcctaaaagcattaggaccacaggcaacactagaagaaatgatgacagcatgtcagggagtaggggggcccagccataaagcaagagtcttggctgaggcaatg------------agccaagcaacaaaa---------------------gcaactgcagtaatgatgcagaga---ggtaat---tttaagggc---ccaaga---agaagtattaaatgtttcaactgtggcaaagaagggcatacagcaaaaaattgcagggctcctaggaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatctgg---cct---tcccacagg---------ggg---aggccagggaactttctccagagc------------------------------aggcca------gaaccctcagcc---------------------------------------------------ccaccagca---gagagtttcgggtttgga---------------gaggagata---accccctct------------------------ccgaagcaggagaag------------------------aaggacgag---------------------gggctgtac------cctccc---tta---gcctccctcaaatcactctttggcaacgacccattgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,7rev,10rev,12rev","1fw","7rev,10rev,12rev",4,1,3
"AF064699",">Ref.06_cpx.AU.96.BFP90.AF064699","Ref","06_cpx","AU","96","BFP90","AF064699",53,2013,1,30,1474,1503,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgaatgggaaaaaattcggttacggccagggggaaagaaaaaatataaaatgaaacacctagtatgggcaagcagggagctggaaagattcgcaattaaccctggccttttagaaacagcagaaggatgtcaacagataatagagcagttacaatcaactctcaagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtacatcaaaggataaaagtaacagacaccaaggaagccatagataaaatagaggaaatacaaaagaagagcaagcaaaaggcacatcaggcagctgccacaggaaacagcagtaatctcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaggccatgtcaccacgaactttaaatgcatgggtgaaagtaatagaagataaggctttcagcccagaagtaatacccatgttcacagcattatcagaaggagccaccccacaagatttaaacatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagggtacatccagtacatgcaggacctattccaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataggatggatgacaagcaacccacctatcccagtgggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgttggcattttggacataaaacaaggaccaaaagaacccttcagggattatgtagataggttctttaaaactctaagagctgagcaagctacacaggaagtaaaaaattggatgacagacaccttgttggtccaaaatgcaaacccagattgtaagaccattttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttagctgaggcaatgagccaggcatcagttggagccataatgatgcagaaaagcaattttaagggcccgaaaagaagtattaagtgcttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagattgtacagagagacaggctaattttttagggaaaatctggccttccaacaaggggaggccagggaattttcttcagaacaggccagagccaacagccccacccatagagagcttcggtttcggagaggagatagccccctccccgaaacaggagtcgaaggagaaggaggaaaaggggctatatcccttagcctccctcaaatcactctttggcagcgacccctagtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgaatgggaaaaaattcggttacggccagggggaaagaaaaaatataaaatgaaacacctagtatgggcaagcagggagctggaaagattcgcaattaaccctggccttttagaaacagcagaaggatgtcaacagataatagagcagttacaatcaactctcaagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtacatcaaaggataaaagtaacagacaccaaggaagccatagataaaatagaggaaatacaa------------aag---------------------aag---------------agcaag------caaaag---------------------------------gcacatcaggca---gct---------------------------------gccacagga------------------------------------------------------------------------------------------aacagcagtaat------------------ctcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaggccatgtcaccacgaactttaaatgcatgggtgaaagtaatagaa---gataaggctttcagcccagaagtaatacccatgttcacagcattatcagaaggagccaccccacaagatttaaacatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagggtacatccagtacatgcaggacctattccaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataggatggatgaca---------agcaacccacctatc---ccagtgggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgttggcattttggacataaaacaaggaccaaaagaacccttcagggattatgtagataggttctttaaaactctaagagctgagcaagctacacaggaagtaaaaaattggatgacagacaccttgttggtc---caaaatgcaaacccagattgtaagaccattttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttagctgaggcaatg------------agccaggcatca------------------------gttggagccataatgatgcagaaa---agcaat---tttaagggc---ccgaaa---agaagtattaagtgcttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagattgtaca---------gag---agacaggctaattttttagggaaaatctgg---cct---tccaacaag---------ggg---aggccagggaattttcttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccacccata---gagagcttcggtttcgga---------------gaggagata---gccccctcc------------------------ccgaaacaggagtcg------------------------aaggagaag------------gaggaaaaggggctatat---------ccc---tta---gcctccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,8rev,10rev,11fw,12rev","1fw,11fw","4rev,8rev,10rev,12rev",6,2,4
"AY535659",">Ref.06_cpx.EE.01.EE0359.AY535659","Ref","06_cpx","EE","01","EE0359","AY535659",54,2013,1,30,1477,1506,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgattgggagaaaattcggttaaggccagggggaaagaaaaaatataaatggaaacacatagtatgggcaagcagggagctggaaagattcgcagttaaccctggccttttagaaacaacggaaggatgtcagcagataatggaacagttacaatcagctctcaggacagggtcagaagaacttaagtcattatataatacagtagcagtcctctattgtgtacatcaaaggataaaagtagcagacaccaaggaagctctagataaaatagaggaaatacaaaataagagcaagcaaaaggcacagcaggcagcaactgccacaggaaacagcagtaatctcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaggccatttcaccaagaacattaaatgcatgggtgaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttctcagcattagcagaaggagccacaccaggagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggacaggacacatccagtacaagcagggcctattccaccaggacagataagagagccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcatggatgacaagcaacccacctattccagtgggagaaatctataaaagatggataatcctaggattaaataagatagtaagaatgtacagccctgtcagcattttggacataaaacaaggaccaaaagaacccttcagggattatgtagataggttttttaaatgtttaagagctgaacaagctacacaggaagtaaaaggctggatgacagataccttgttggtccaaaatgcgaacccagattgtaaaaccattttaaaagcattaggaccagcagctacacgagaagaaatgatgaccgcatgtcagggaatgggaggacccagccataaagcaagagttttagctgaggcaatgagccaggtatcaaatacagcagcagccacaatgatgcagagaagcaatttcaagggcccaaaaagaaatattaagtgtttcaactgtggcaaggaaggacatatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggaaggacatcaaatgaaagactgcacagaaagacaggctaattttttagggaaaatctggccttccaacaaggggaggccagggaactttcttcagaacaggccagagccaacagccccacctgcagggagcttcaggttcgaggaggagacagcagccccctcctcgaagcaggagccgaaggaaaaggagctatatcccataacttccctcaaatcactctttggcagcgacccctagtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgattgggagaaaattcggttaaggccagggggaaagaaaaaatataaatggaaacacatagtatgggcaagcagggagctggaaagattcgcagttaaccctggccttttagaaacaacggaaggatgtcagcagataatggaacagttacaatcagctctcaggacagggtcagaagaacttaagtcattatataatacagtagcagtcctctattgtgtacatcaaaggataaaagtagcagacaccaaggaagctctagataaaatagaggaaatacaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------gcacagcaggcagcaact---------------------------------gccacagga------------------------------------------------------------------------------------------aacagcagtaat------------------ctcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaggccatttcaccaagaacattaaatgcatgggtgaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttctcagcattagcagaaggagccacaccaggagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggacaggacacatccagtacaagcagggcctattccaccaggacagataagagagccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcatggatgaca---------agcaacccacctatt---ccagtgggagaaatctataaaagatggataatcctaggattaaataagatagtaagaatgtacagccctgtcagcattttggacataaaacaaggaccaaaagaacccttcagggattatgtagataggttttttaaatgtttaagagctgaacaagctacacaggaagtaaaaggctggatgacagataccttgttggtc---caaaatgcgaacccagattgtaaaaccattttaaaagcattaggaccagcagctacacgagaagaaatgatgaccgcatgtcagggaatgggaggacccagccataaagcaagagttttagctgaggcaatg------------agccaggtatcaaataca------------------gcagcagccacaatgatgcagaga---agcaat---ttcaagggc---ccaaaa---agaaatattaagtgtttcaactgtggcaaggaaggacatatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggaaggacatcaaatgaaagactgcaca---------gaa---agacaggctaattttttagggaaaatctgg---cct---tccaacaag---------ggg---aggccagggaactttcttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccacctgca---gggagcttcaggttcgag---------------gaggagacagcagccccctcc------------------------tcgaagcaggagccg------------------------aaggaaaag---------------------gagctatat---------ccc---ata---acttccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","4rev,7rev,11fw,12rev","11fw","4rev,7rev,12rev",4,1,3
"AB286851",">Ref.06_cpx.GH.03.03GH173_06.AB286851","Ref","06_cpx","GH","03","03GH173_06","AB286851",55,2013,1,30,1519,1548,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1519,1548,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgaatgggagaaaattcggttacggccagggggaaagaaaaaatatagaatgaaacacttagtatgggcaagcagggagctggacagatttgcacttaaccctggccttttagaaacaacagaagggtgccagcagataatggaacagttacaaccaagtctcaagacaggatcagaagaaattaagtcattgtataatacagtagcaaccctctattgtgtacatcaaaggataaaagtaacagacaccaaggaagctctagataaaatagaggagatgcaaaataagagcaagcaaaaggcacagcaagcagcagctgccacaggaagcagcagtaatgtcagtcaaaattaccctatagtgcaaaatgcacaagggcaaatggtgcatcagcccatgtcaccaagaactttaaatgcatgggtaaaagcaatagaagaaagggctttcagtccagaagtaatacccatgtttacagcattatcagaaggatgcaccccacaagatttaaatatgatgctaaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagattgggataggacacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgatatagcaggaactaccagtaacctacaggagcaaatagggtggatgacaggcaacccacctattccagtgggagaaatctatagaagatggataatcctaggattaaataaaatagtaagaatgtatagtcctgtcagcattttagacataaaacaagggccaaaagagcccttcagagattatgtagatcggttctttaaagttttaagagctgagcaagccacacaggaagtaaaaaattggatgacagacaccttgttggtccaaaatgctaacccagattgtaagaccattttaagaggattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagagttttagctgaggcaatgagccaagcatcaggtgcagcagcagctataatgatgcagaaaagcaattttaagggcccgaaaagaaatattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggaaggacatcaaatgaaagactgcaccgagagacaggctaattttttagggagaatctggccttccagcaaggggaggccagggaattttcttcagaacaggccagagccaacagcccggacagagccaacagccccaccagcagagatctttgggttcggagaggggacagccccctccccgagacaggagccgagacaggagtcaaggcaggagccgaaggagaaggaggagctatatcccttagcttccctcaaatcactctttggcagcgacccctagtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgaatgggagaaaattcggttacggccagggggaaagaaaaaatatagaatgaaacacttagtatgggcaagcagggagctggacagatttgcacttaaccctggccttttagaaacaacagaagggtgccagcagataatggaacagttacaaccaagtctcaagacaggatcagaagaaattaagtcattgtataatacagtagcaaccctctattgtgtacatcaaaggataaaagtaacagacaccaaggaagctctagataaaatagaggagatgcaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------gcacagcaagcagcagct---------------------------------gccacagga------------------------------------------------------------------------------------------agcagcagtaat------------------gtcagtcaaaattaccctatagtgcaaaatgcacaagggcaaatggtgcatcagcccatgtcaccaagaactttaaatgcatgggtaaaagcaatagaa---gaaagggctttcagtccagaagtaatacccatgtttacagcattatcagaaggatgcaccccacaagatttaaatatgatgctaaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagattgggataggacacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgatatagcaggaactaccagtaacctacaggagcaaatagggtggatgaca---------ggcaacccacctatt---ccagtgggagaaatctatagaagatggataatcctaggattaaataaaatagtaagaatgtatagtcctgtcagcattttagacataaaacaagggccaaaagagcccttcagagattatgtagatcggttctttaaagttttaagagctgagcaagccacacaggaagtaaaaaattggatgacagacaccttgttggtc---caaaatgctaacccagattgtaagaccattttaagaggattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagagttttagctgaggcaatg------------agccaagcatcaggtgca------------------gcagcagctataatgatgcagaaa---agcaat---tttaagggc---ccgaaa---agaaatattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggaaggacatcaaatgaaagactgcacc---------gag---agacaggctaattttttagggagaatctgg---cct---tccagcaag---------ggg---aggccagggaattttcttcagaac------------------------------aggcca------gagccaacagcc----------------------------cggacagagccaac---agcc--ccaccagca---gagatctttgggttcgga---------------gaggggaca---gccccctcc------------------------ccgagacaggagccgagacaggagtcaaggcaggagccgaaggagaaggag------------------gagctatat---------ccc---tta---gcttccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,8rev,11fw,12rev","1fw,11fw","4rev,7rev,8rev,12rev",6,2,4
"EF368372",">Ref.07_BC.CN.05.XJDC6431_2.EF368372","Ref","07_BC","CN","05","XJDC6431_2","EF368372",56,2013,1,30,1459,1488,"atgggtgcgagagcgtcaatattaagaggc","ctctttggcaacgacccctcgtcacaataa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcaatattaagaggcgaaaaattagataaatgggaaaaaattaggttaaggccagggggaaagaaacactatatgctaaaacacctagtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagaaacagcagatggctgtaaacaaataataaaacagctacaaccagctcttaagacaggaacagaggaacttagatcattattcaacacagtagcaactctctattgtgtacataaagggatagatgtacgagacaccaaagaagtcttagacaagatagaggaagaacaaaacaaagttcagcaaaaaacacagcaggcaaaggaggctgacgggaaggtcagtcaaaattttcctatagtgcagaatctccaagggcaaatggtacaccaggccatatcacctagaactttaaatgcatgggtaaaagtggtagaagagaaggcttttagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatattaaaagataccatcaatgaagaggctgcagaatgggatagattacatccagtacatgcagggcctaatccagtaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggagcaaatagcatggatgacaagtaacccacctgttccagtaggagacatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccccaccagcattctggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagcggaacaagctacacaagatgtaaaaaattggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccattctaagagcattaggaccaggggcttcaatagaagaaatgatgacagcatgtcagggagtgggaggacctagtcataaagcaagagtgttggctgaggcaatgagccaaacacaaaataccataatgatgcagagaagcaattttaaaggccctaaaagaattgttaaatgtttcaactgtggcaaagaagggcacatagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaagaaggacaccaactgaaagattgtactgagagacaggctaattttttagggaaaatctggccctcccacaagggaaggccagggaattttcttcagagcagaccagagccaacagccccaccagaggagagcttcaggcttgggggagagacaacaactccagctcagaagcaggagtcaacagacaaggaactatatcctttaacctccctcagatcactctttggcaacgacccctcgtcacaataa","atgggtgcgagagcgtcaatattaagaggcgaaaaattagataaatgggaaaaaattaggttaaggccagggggaaagaaacactatatgctaaaacacctagtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagaaacagcagatggctgtaaacaaataataaaacagctacaaccagctcttaagacaggaacagaggaacttagatcattattcaacacagtagcaactctctattgtgtacataaagggatagatgtacgagacaccaaagaagtcttagacaagatagaggaagaacaa------------aac---------------------aaa---------------gttcag------caaaaa---------------------------------acacagcaggcaaaggag------------------------------gctgac---ggg---------------------------------------------------------------------------------------------------aag------------------gtcagtcaaaattttcctatagtgcagaatctccaagggcaaatggtacaccaggccatatcacctagaactttaaatgcatgggtaaaagtggtagaa---gagaaggcttttagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatattaaaagataccatcaatgaagaggctgcagaatgggatagattacatccagtacatgcagggcctaatccagtaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggagcaaatagcatggatgaca---------agtaacccacctgtt---ccagtaggagacatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccccaccagcattctggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagcggaacaagctacacaagatgtaaaaaattggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccattctaagagcattaggaccaggggcttcaatagaagaaatgatgacagcatgtcagggagtgggaggacctagtcataaagcaagagtgttggctgaggcaatg------------agccaaacacaa---------------------------aataccataatgatgcagaga---agcaat---tttaaaggc---cctaaa---agaattgttaaatgtttcaactgtggcaaagaagggcacatagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaagaaggacaccaactgaaagattgtact---------gag---agacaggctaattttttagggaaaatctgg---ccc---tcccacaag---------gga---aggccagggaattttcttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagag---gagagcttcaggcttggg---------------ggagagacaacaactccagct------------------------cagaagcaggagtca------------------------acagacaag---------------------gaactatat---------cct---tta---acctccctcagatcactctttggcaacgacccctcgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,10rev,11fw,12rev","1fw,11fw","2rev,10rev,12rev",5,2,3
"EF368370",">Ref.07_BC.CN.05.XJDC6441.EF368370","Ref","07_BC","CN","05","XJDC6441","EF368370",57,2013,1,30,1462,1491,"atgggtgcgagagcgtcaatattaagaggg","ctctttggcaacgacccctcgtcacaataa",1,30,1,30,1,30,1984,2013,1462,1491,1984,2013,"atgggtgcgagagcgtcaatattaagagggggaaaattagataaatgggaaaagattaggttaaggccagggggaaagaaacactatatgctaaaacacctagtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagagacagcaaaaggctgtaaacaaataataaaacagctacaaccagctctccagacaggaacagaggaacttagatcattattcaacacagtagcaactctctattgtgtacataaagagataaatgtacgagacaccaaagaagccttagacaagatagaggaagaacaaagtgaaattcagcaaaaaacacagcaggcaaaggaggctgctgacaagaaggtcagtcaaaattatcctatagtgcagaatctccaagggcaaatggtacatcaggccatatcgcctagaactttaaatgcatgggtaaaagtggtagaagaaaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatctaaacaccatgctaaacacagtgggggggcatcaagcagccatgcaaatattaaaagataccatcaatgaagaggctgcagaatgggataggttacatccagtacatgcagggcctaatccaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggagcaaatagcatggatgacgagtaatccacctgttccagtaggagacatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctaccagcattctggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagcggaacaagctacacaagatgtaaaaaattggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccattttaagagcattagggccaggggcttcaatagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagagtgttggctgaggcaatgagccaaacacaaagcaccatactggtgcagagaagcaattttaaaggccctaaaagaattgttaaatgtttcaactgtggcaaggaagggcacatagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaagaaggacatcaaatgaaagattgtactgagagacaggccaattttttagggaaaatctggccctcccacaagggaaggccagggaattttcttcagagcagaccagagccaacagccccaccagaggagagcttcaggtttgggggagagacaacaactctatctcagaagcaggagccaatagacaaggaactacatcctttaacttccctcagatcactctttggcaacgacccctcgtcacaataa","atgggtgcgagagcgtcaatattaagagggggaaaattagataaatgggaaaagattaggttaaggccagggggaaagaaacactatatgctaaaacacctagtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagagacagcaaaaggctgtaaacaaataataaaacagctacaaccagctctccagacaggaacagaggaacttagatcattattcaacacagtagcaactctctattgtgtacataaagagataaatgtacgagacaccaaagaagccttagacaagatagaggaagaacaa------------agt---------------------gaa---------------attcag------caaaaa---------------------------------acacagcaggcaaaggag------------------------------gctgctgacaag---------------------------------------------------------------------------------------------------aag------------------gtcagtcaaaattatcctatagtgcagaatctccaagggcaaatggtacatcaggccatatcgcctagaactttaaatgcatgggtaaaagtggtagaa---gaaaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatctaaacaccatgctaaacacagtgggggggcatcaagcagccatgcaaatattaaaagataccatcaatgaagaggctgcagaatgggataggttacatccagtacatgcagggcctaatccaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggagcaaatagcatggatgacg---------agtaatccacctgtt---ccagtaggagacatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctaccagcattctggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagcggaacaagctacacaagatgtaaaaaattggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccattttaagagcattagggccaggggcttcaatagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagagtgttggctgaggcaatg------------agccaaacacaa---------------------------agcaccatactggtgcagaga---agcaat---tttaaaggc---cctaaa---agaattgttaaatgtttcaactgtggcaaggaagggcacatagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaagaaggacatcaaatgaaagattgtact---------gag---agacaggccaattttttagggaaaatctgg---ccc---tcccacaag---------gga---aggccagggaattttcttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagag---gagagcttcaggtttggg---------------ggagagacaacaactctatct------------------------cagaagcaggagcca------------------------atagacaag---------------------gaactacat---------cct---tta---acttccctcagatcactctttggcaacgacccctcgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"AF286230",">Ref.07_BC.CN.98.98CN009.AF286230","Ref","07_BC","CN","98","98CN009","AF286230",58,2013,1,30,1459,1488,"atgggtgcgagagcgtcaatattaagaggg","ctctttggcaacgacccctcgtcacaataa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcaatattaagagggggaaaattagataaatgggaaaaaattaggttaaggccagggggaaagaagcactatatgctaaaacacctagtatgggcaagcagggagctggaaagatttgcacttaatcctggccttttagagacatcagaaggctgtagacaaataatgaaacagctacaaccagctcttcagacaggaacagaggaacttagatcattattcaacacagtagcaactctctattgtgtacatacagagatagatgtacgagacaccaaagaagccttagacaagatagaggaagaacaaaacaaaattcagcaaaaaacacagcaggcaaaggaggctgacgggaaggtcagtcaaaattatcctatagtgcagaatctccaagggcaaatggtacatcaggccctatcacctagaactttaaatgcatgggtaaaagtggtagaagagaaggcttttagcccagaagtcatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatattaaaagataccatcaatgaagaggctgcagaatgggatagattacatccagtacatgcagggcctattgcaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtaaccttcaggaacaaatagcatggatgacaagtaacccacctgttccagtaggagacatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctaccagcattctggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagcggaacaagctacacaagatgtaaaaaattggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccattttaagagcattaggaccaggggcttccatagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaagcaagagtgttggctgaggcaatgagccaaacaaacagtaccatactgatgcagagaagcaattttaaaggctctaaaagaattgttaaatgtttcaactgtggcaaggaagggcacatagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagattgtactgagagacaggccaattttttagggaaaatctggccctcccacaagggaaggccagggaattttcttcagagcagaccagagccaacagccccaccagaggagagcttcaggtttggggaagagacaacaactccatctcagaagcaggagacaatagacaaggaactatatcctttaacttccctcaaatcactctttggcaacgacccctcgtcacaataa","atgggtgcgagagcgtcaatattaagagggggaaaattagataaatgggaaaaaattaggttaaggccagggggaaagaagcactatatgctaaaacacctagtatgggcaagcagggagctggaaagatttgcacttaatcctggccttttagagacatcagaaggctgtagacaaataatgaaacagctacaaccagctcttcagacaggaacagaggaacttagatcattattcaacacagtagcaactctctattgtgtacatacagagatagatgtacgagacaccaaagaagccttagacaagatagaggaagaacaa------------aac---------------------aaa---------------attcag------caaaaa---------------------------------acacagcaggcaaaggag------------------------------gctgac---ggg---------------------------------------------------------------------------------------------------aag------------------gtcagtcaaaattatcctatagtgcagaatctccaagggcaaatggtacatcaggccctatcacctagaactttaaatgcatgggtaaaagtggtagaa---gagaaggcttttagcccagaagtcatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatattaaaagataccatcaatgaagaggctgcagaatgggatagattacatccagtacatgcagggcctattgcaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtaaccttcaggaacaaatagcatggatgaca---------agtaacccacctgtt---ccagtaggagacatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctaccagcattctggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagcggaacaagctacacaagatgtaaaaaattggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccattttaagagcattaggaccaggggcttccatagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaagcaagagtgttggctgaggcaatg------------agccaaacaaac---------------------------agtaccatactgatgcagaga---agcaat---tttaaaggc---tctaaa---agaattgttaaatgtttcaactgtggcaaggaagggcacatagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagattgtact---------gag---agacaggccaattttttagggaaaatctgg---ccc---tcccacaag---------gga---aggccagggaattttcttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagag---gagagcttcaggtttggg---------------gaagagacaacaactccatct------------------------cagaagcaggagaca------------------------atagacaag---------------------gaactatat---------cct---tta---acttccctcaaatcactctttggcaacgacccctcgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,7rev,10rev,12rev",6,2,4
"HM067748",">Ref.08_BC.CN.06.nx2.HM067748","Ref","08_BC","CN","06","nx2","HM067748",59,2013,1,30,1451,1480,"atgggtgcgagagcgtcaatattaagaggg","ctctttggcagcgaccccttgtctcaataa",1,30,1,30,1,30,1984,2013,1451,1480,1984,2013,"atgggtgcgagagcgtcaatattaagaggggaaaaattggataaatgggaaagaattaggttaaggccagggggaaagaaacactatctgctaaaacacatagtatgggcaagcagagagctggaaaaatttgcacttaaccctggccttttagagacatcagaaggatgtaagcaaataataaaacagctacaaccagctcttcagacaggaacagaggaacttaaatcattatacaacacagtagcagttctctattgtgtacatgaaaaaatagacatacgagacaccaaagaagccttagacaagatagaagaagaacaaaataaatgtcagcagaaaacacagcaggcaaaaaaggatgatgagaaggttagtcaaaattatcctatagtgcagaatctccaagggcacatggtacatcagcctctatcacctagaactttaattgcatgggtaatagtagtggacagagaagactccttagctcagaagtaatacccctgttcacagcataatcagaaggagccaccccacaagatctaaactccatgttaaatacagtagggcgacatcaagcagctatgcaaatgttaaaagataccatcaatggagaggctgcagaatgagatagattgcatccagtgcatgcagggccagtggcaccaggccagatgagagaaccaaggggtagtgacatagcaggaactactagtactctccaggagcaaataggatggatgacaaataatccacctatcccagtaggagaaatctataaaagatggataatcgtcggattaaataaattagtaagaatgtatagccctaccagcattctggacataaaacaagggccaatggaaccctttagagactatgttgaccagttcttttatacttttagagctgaacaagctacacaagatgtataacattggatgacagacaccttgttagcgccaaaatgcgaacccagattgtaagaccattctatgagcattaggatcagcggcttcattagcagaaatgatgagagcatgtcagggagtaggaggacctagccacaaaacaagagtgttggctgaggcaatgagccaaacaaacaataccatactgatgcagagcagcaattttaaaggctctaatagaattgttaaatgtctcaactgtggcaaggaagggcacatagccaaaaattgcagcgcccctaggaaaaaaggctgttggaaatgtggataggaaggacaccaaatgaaagactgtactgaaaggcaggcgaattatttagggaaattatggccttcccacaaggggaggccagggaatttcctccagagcagaccagagccgacagccccaccagcagagagcttcaggttcgaggagactgaccctagctccgcagcaggaaccgaaagacagggaaaccttaacttccctcagatcactctttggcagcgaccccttgtctcaataa","atgggtgcgagagcgtcaatattaagaggggaaaaattggataaatgggaaagaattaggttaaggccagggggaaagaaacactatctgctaaaacacatagtatgggcaagcagagagctggaaaaatttgcacttaaccctggccttttagagacatcagaaggatgtaagcaaataataaaacagctacaaccagctcttcagacaggaacagaggaacttaaatcattatacaacacagtagcagttctctattgtgtacatgaaaaaatagacatacgagacaccaaagaagccttagacaagatagaagaagaacaa------------aat---------------------aaa---------------tgtcag------cagaaa---------------------------------acacagcaggcaaaaaag------------------------------gatgat---gag---------------------------------------------------------------------------------------------------aag------------------gttagtcaaaattatcctatagtgcagaatctccaagggcacatggtacatcagcctctatcacctagaactttaattgcatgggtaatagtagtggacagagaagactc-cttagctcagaagtaatacccctgttcacagcataatcagaaggagccaccccacaagatctaaactccatgttaaatacagtagggcgacatcaagcagctatgcaaatgttaaaagataccatcaatggagaggctgcagaatgagatagattgcatccagtgcatgcagggccagtggcaccaggccagatgagagaaccaaggggtagtgacatagcaggaactactagtactctccaggagcaaataggatggatgaca---------aataatccacctatc---ccagtaggagaaatctataaaagatggataatcgtcggattaaataaattagtaagaatgtatagccctaccagcattctggacataaaacaagggccaatggaaccctttagagactatgttgaccagttcttttatacttttagagctgaacaagctacacaagatgtataacattggatgacagacaccttgttagcgc--caaaatgcgaacccagattgtaagaccattctatgagcattaggatcagcggcttcattagcagaaatgatgagagcatgtcagggagtaggaggacctagccacaaaacaagagtgttggctgaggcaatg------------agccaaacaaac---------------------------aataccatactgatgcagagc---agcaat---tttaaaggc---tctaat---agaattgttaaatgtctcaactgtggcaaggaagggcacatagccaaaaattgcagcgcccctaggaaaaaaggctgttggaaatgtggataggaaggacaccaaatgaaagactgtact---------gaa---aggcaggcgaattatttagggaaattatgg---cct---tcccacaag---------ggg---aggccagggaatttcctccagagc------------------------------agacca------gagccgacagcc---------------------------------------------------ccaccagca---gagagcttcaggttcgag---------------gag---a--ctgaccctagct------------------------ccgcagcaggaaccg------------------------aaagacagg---------------------gaa---------------acc---tta---acttccctcagatcactctttggcagcgaccccttgtctcaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,3fw,4rev,8rev,10rev,11fw,12rev","1fw,3fw,11fw","4rev,8rev,10rev,12rev",7,3,4
"AY008715",">Ref.08_BC.CN.97.97CNGX_6F.AY008715","Ref","08_BC","CN","97","97CNGX_6F","AY008715",60,2013,0,25,1443,1472,"gtgcgagagcgtcaatattaagagg","ctctttggcagcgaccccttgtctcaataa",1,30,0,25,1,30,1984,2013,1443,1472,1984,2013,"gtgcgagagcgtcaatattaagagggggaaaattagataaatgggaaaaaattaggttaaggccagggggaaaaaaacactatatgctaaaacacctagtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagagacatcagaaggctgtaagcaaataataaaacagctacaaccagctcttcagacaggaacagaggaacttagatcattattcaacacagtagcaactctctattgtgtacatgaagagatagaagtacgagacaccaaagaagccttagacaagatagaggaagaacaaaataaaattcagcaaaaaacgcagcaggcaaaaaaagctgaagagaaggtcagtcaaaattatcctatagtgcagaatccccaagggcaaatggtacatcagcccctatcacctagaactttaaatgcatgggtaaaagtagtggaagagaaggcttttagcccagaagtaatacccatgttcacagcattatcagaaggagccaccccacaagatttaaacaccatgttaaatacagtagggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaagaggctgcagaatgggatagattgcatccagtgcatgcagggccagtggcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtactcttcaggagcaaataggatggatgacaaataatccacctatcccagtaggagaaatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctaccagcattctggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagctgaacaagctacacaagatgtaaaaaattggatgacagacaccttgttagtccaaaatgcgaacccagattgtaagaccattttaagagcattaggatcaggggcttcattagaagaaatgatgacagcatgtcagggagtaggaggacctagccacaaagcaagagtgttggctgaggcaatgagccaaacaaacaataccatactgatgcagagaagcaattttaaaggctctaaaagaattgttaaatgtttcaactgtggcaaggaagggcacatagccaaaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtactgaaaggcaggcgaattttttagggaaattttggccttcccacaaggggaggccagggaatttcctccagagcagaccagagccaacagccccaccagcagagagcttcaggttcgaggagacaaccccagctccgaagcaggaaccgaaagacagggaacccttaacttccctcagatcactctttggcagcgaccccttgtctcaataa","----gtgcgagagcgtcaatattaagagggggaaaattagataaatgggaaaaaattaggttaaggccagggggaaaaaaacactatatgctaaaacacctagtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagagacatcagaaggctgtaagcaaataataaaacagctacaaccagctcttcagacaggaacagaggaacttagatcattattcaacacagtagcaactctctattgtgtacatgaagagatagaagtacgagacaccaaagaagccttagacaagatagaggaagaacaa------------aat---------------------aaa---------------attcag------caaaaa---------------------------------acgcagcaggcaaaaaaa------------------------------gctgaa---gag---------------------------------------------------------------------------------------------------aag------------------gtcagtcaaaattatcctatagtgcagaatccccaagggcaaatggtacatcagcccctatcacctagaactttaaatgcatgggtaaaagtagtggaa---gagaaggcttttagcccagaagtaatacccatgttcacagcattatcagaaggagccaccccacaagatttaaacaccatgttaaatacagtagggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaagaggctgcagaatgggatagattgcatccagtgcatgcagggccagtggcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtactcttcaggagcaaataggatggatgaca---------aataatccacctatc---ccagtaggagaaatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctaccagcattctggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagctgaacaagctacacaagatgtaaaaaattggatgacagacaccttgttagtc---caaaatgcgaacccagattgtaagaccattttaagagcattaggatcaggggcttcattagaagaaatgatgacagcatgtcagggagtaggaggacctagccacaaagcaagagtgttggctgaggcaatg------------agccaaacaaac---------------------------aataccatactgatgcagaga---agcaat---tttaaaggc---tctaaa---agaattgttaaatgtttcaactgtggcaaggaagggcacatagccaaaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtact---------gaa---aggcaggcgaattttttagggaaattttgg---cct---tcccacaag---------ggg---aggccagggaatttcctccagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcaggttcgag---------------gag---aca---accccagct------------------------ccgaagcaggaaccg------------------------aaagacagg---------------------gaa---------------ccc---tta---acttccctcagatcactctttggcagcgaccccttgtctcaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","11fw,12rev","11fw","12rev",2,1,1
"AJ866553",">Ref.09_cpx.CI.00.00IC_10092.AJ866553","Ref","09_cpx","CI","00","00IC_10092","AJ866553",61,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattacgcggg","ctctttggcaacgaccaatggtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattacgcgggggaaaattagatgcatgggagaaaattagcttaaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagggagctggaaagattcgcagttaaccctggtcttttagaaacagcagaagggtgtcagcaaatattgggacagttacaaccagctctcaagacaggatcagaagaacttaagtcattatataatctagtagcaaccctctattgtgtacaacaaaggatagatgtaaaagacaccaaggaagctttagataaaatagaggaaatacaaaataaaaagacacagcaggcagcagcagctgacacaggaagcaacagcaatgtcagccaaaattacccaatagtgcagaatgcacaagggcaaatggtacatcagtccatgtcacctaggactttgaatgcatgggtaaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttcacagcattatcagagggggccaccccacaagatctaaatatgatgctaaacatagttggaggacatcaggcagctatgcaaatgctaaaagatgccatcaatgaggaagctgcagaatgggatagggtacatccagtacatgcagggcctaatccaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaatagggtggatgacaagcaacccacccatcccagtgggagaaatctataaaagatggatagtcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataaaacaagggccaaaagaacccttcagggactatgtagataggttctttaaaactcttagagctgagcaagctacacaggatgtgaaaaattggatgacagaaactttgctggtccaaaatgcaaatccagactgtaagaccatcttaagaggattaggaccaggggctacattagaagagatgatgacagcatgtcagggagtgggaggacctggccataaagcaagaattttagctgaagcaatgagtcaggtacaaaatacaaacatactaatgcagagaggcaattttaagggccagaaaagaattaagtgtttcaactgtggcaaagagggacacctagccagaaattgcagagcccctagaaaaaagggctgttggaaatgtggaagggaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggcctttcaacaacaaagggaggccagggaactttcctcagagcagaacagaaccatcagccccaccagcagagagctgctggtcgaaggaggagataacctcccctccgaagcaggagcagaaggacagggaacaaccccctcctttagtttccctcaaatcactctttggcaacgaccaatggtcacagtaa","atgggtgcgagagcgtcagtattacgcgggggaaaattagatgcatgggagaaaattagcttaaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagggagctggaaagattcgcagttaaccctggtcttttagaaacagcagaagggtgtcagcaaatattgggacagttacaaccagctctcaagacaggatcagaagaacttaagtcattatataatctagtagcaaccctctattgtgtacaacaaaggatagatgtaaaagacaccaaggaagctttagataaaatagaggaaatacaa------------aat---------------------------------------------------aaaaag---------------------------------acacagcaggcagcagca------------------------------gctgacacagga------------------------------------------------------------------------------------------agcaacagcaat------------------gtcagccaaaattacccaatagtgcagaatgcacaagggcaaatggtacatcagtccatgtcacctaggactttgaatgcatgggtaaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttcacagcattatcagagggggccaccccacaagatctaaatatgatgctaaacatagttggaggacatcaggcagctatgcaaatgctaaaagatgccatcaatgaggaagctgcagaatgggatagggtacatccagtacatgcagggcctaatccaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaatagggtggatgaca---------agcaacccacccatc---ccagtgggagaaatctataaaagatggatagtcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataaaacaagggccaaaagaacccttcagggactatgtagataggttctttaaaactcttagagctgagcaagctacacaggatgtgaaaaattggatgacagaaactttgctggtc---caaaatgcaaatccagactgtaagaccatcttaagaggattaggaccaggggctacattagaagagatgatgacagcatgtcagggagtgggaggacctggccataaagcaagaattttagctgaagcaatg------------agtcaggtacaa------------------------aatacaaacatactaatgcagaga---ggcaat---tttaagggc---cagaaa---aga---attaagtgtttcaactgtggcaaagagggacacctagccagaaattgcagagcccctagaaaaaagggctgttggaaatgtggaagggaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---ttcaacaacaaa------ggg---aggccagggaactttcctcagagc------------------------------agaaca------gaaccatcagcc---------------------------------------------------ccaccagca---gagagctgctggtcgaag---------------gaggagata---acctcccct------------------------ccgaagcaggagcag------------------------aaggacagg---------------------gaacaaccc------cctcct---tta---gtttccctcaaatcactctttggcaacgaccaatggtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,12rev",6,2,4
"AY093605",">Ref.09_cpx.GH.96.96GH2911.AY093605","Ref","09_cpx","GH","96","96GH2911","AY093605",62,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtactaagtggg","ctctttggcaacgacccattgtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtactaagtgggggaaaattagatgcatgggagaaaattcggttaaagccagggggaaagaaaaaatatagaatgaagcatctagtatgggcaagcagggagttggaaagattcgcagttgatcctagcctcttagaaacaacaggagggtgtcaacaaatattggaacagttacagccatctcttaggacaggatcagaagaacttaaatcattatataatacagtagcaaccctctattgtgtacatcaaaagatagaggtaagagacaccaaggaagcgttagataaaatagaggaaatacaaggtaagagcaagcaaaagacacagcaggcaacagctaacacaggaaacaacagcaaggtcagccaaaattacccaatagtgcagaatgcacaagggcagatggtacatcaggccatctcacctagaactttraatgcatgggtaaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttcacagcattatcagagggagccaccccacaagatctaaatatgatgctaaacatagttggaggacatcaggcagctatgcaaatgctaaaagataccatcaatgaggaagctgcagaatgggatagggtacatccagtacatgcagggcctaatccaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtaccgttcaagaacaaatagcatggatgacaggtaacccacccatcccagtgggagaaatctataaaagatggatagtcctgggattaaataaaatagtaagaatgtatagccctgtcagtattttggacataagacaagggccaaaagaacccttcagggactatgtagatagattctttaaaactctcagagctgagcaagctacacaggatgtaaaaaattgaatgacagaaaccttgctggtccaaaatgcgaatccagactgtaagaccatcttaagagcattaggaccaggggctacattagaagagatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttggcygaagcaatgagtcaagtacaaaatacaaacatactaatgcagagaggcaattttaagggtcagaaaagaattaagtgtttcaactgtggcaaagaaggacamytagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggccttccaacaaagggaggccagggaactttccycagagcagaccggagccatcggccccrccagcagagagctttgggatgagggaagagacmacctcctctcyraarcagragaaggacggggaacrgccccctcctttartttccctcaaatcactctttggcaacgacccattgtcacagtaa","atgggtgcgagagcgtcagtactaagtgggggaaaattagatgcatgggagaaaattcggttaaagccagggggaaagaaaaaatatagaatgaagcatctagtatgggcaagcagggagttggaaagattcgcagttgatcctagcctcttagaaacaacaggagggtgtcaacaaatattggaacagttacagccatctcttaggacaggatcagaagaacttaaatcattatataatacagtagcaaccctctattgtgtacatcaaaagatagaggtaagagacaccaaggaagcgttagataaaatagaggaaatacaa------------ggt---------------------aag---------------agcaag------caaaag---------------------------------acacagcaggcaacagct---------------------------------aacacagga------------------------------------------------------------------------------------------aacaacagcaag------------------gtcagccaaaattacccaatagtgcagaatgcacaagggcagatggtacatcaggccatctcacctagaactttraatgcatgggtaaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttcacagcattatcagagggagccaccccacaagatctaaatatgatgctaaacatagttggaggacatcaggcagctatgcaaatgctaaaagataccatcaatgaggaagctgcagaatgggatagggtacatccagtacatgcagggcctaatccaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtaccgttcaagaacaaatagcatggatgaca---------ggtaacccacccatc---ccagtgggagaaatctataaaagatggatagtcctgggattaaataaaatagtaagaatgtatagccctgtcagtattttggacataagacaagggccaaaagaacccttcagggactatgtagatagattctttaaaactctcagagctgagcaagctacacaggatgtaaaaaattgaatgacagaaaccttgctggtc---caaaatgcgaatccagactgtaagaccatcttaagagcattaggaccaggggctacattagaagagatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttggcygaagcaatg------------agtcaagtacaa------------------------aatacaaacatactaatgcagaga---ggcaat---tttaagggt---cagaaa---aga---attaagtgtttcaactgtggcaaagaaggacamytagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaaa---------ggg---aggccagggaactttccycagagc------------------------------agaccg------gagccatcggcc---------------------------------------------------ccrccagca---gagagctttgggatgagg---------------gaagagacm---acctcctct------------------------cyraarcagrag---------------------------aaggacggg---------------------gaacrgccc------cctcct---tta---rtttccctcaaatcactctttggcaacgacccattgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,3fw,4rev,7rev,10rev,11fw,12rev","1fw,3fw,11fw","2rev,4rev,7rev,10rev,12rev",8,3,5
"AY093603",">Ref.09_cpx.SN.95.95SN1795.AY093603","Ref","09_cpx","SN","95","95SN1795","AY093603",63,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgacccattgtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagacaaatgggagaaaattcggttaaggccagggggaaagaaacaatataaaatgaaacatctagtatgggcaagcagggagctggaaagattcgcagttaaccctagccttttagaaacagcagaagggtgtcaacaaataatggaacagttgcaaccagctctcaggacaggatcagaagaactcaaatcgttatataatacagtagcaaccctctattgtgtacatcaaagaatagatgtaagagacaccaaggaagctttagataaaatagaggaaatacaaaagaagagcaagcaagagacacaacaggcagcagctaacacaggaagcaacagcaaggttagccaaaattacccaatagtgcaaaatgcacaagggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtgaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttcacagcattatcagagggagccaccccacaagatctaaatatgatgctaaacatagttggaggacatcaggcagctatgcaaatgctaaaagataccatcaatgaggaagctgtagaatgggataggacacatccagtacatgcagggcctaatccaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtaaccctcaagaacaaatagcatggatgacaggcaacccacccattccagtgggagaaatctataaaagatggatagtcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacaagggccaaaggaacccttcagggactatgtagataggttctttaaaactctcagagctgagcaagcttcacaggaggtaaaaaattggatgacagacaccttgctggtccaaaatgcgaatccagactgtaagaccatcttaaaagcattgggaccaggagctacattagaagagatgatgacagcatgtcagggagtgggaggacctagccataaagcaagagttttggctgaagcaatgagtcaggcacaaaatacaaacatactaatgcagagaagcaattttaagggccaaaaaagaattaagtgtttcaactgtggtaaggaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggaagatttggccttcccacaaggggaggccagggaactttcctcagagcagaccggagccatcagccccaccagcagagagcttggggatgagggaagagataacctcctctctgaagcaggagaaggaggggggacagtctcctcctttagtttccctcaaatcactctttggcaacgacccattgtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagacaaatgggagaaaattcggttaaggccagggggaaagaaacaatataaaatgaaacatctagtatgggcaagcagggagctggaaagattcgcagttaaccctagccttttagaaacagcagaagggtgtcaacaaataatggaacagttgcaaccagctctcaggacaggatcagaagaactcaaatcgttatataatacagtagcaaccctctattgtgtacatcaaagaatagatgtaagagacaccaaggaagctttagataaaatagaggaaatacaa------------aag---------------------aag---------------agcaag------caagag---------------------------------acacaacaggcagcagct---------------------------------aacacagga------------------------------------------------------------------------------------------agcaacagcaag------------------gttagccaaaattacccaatagtgcaaaatgcacaagggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtgaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttcacagcattatcagagggagccaccccacaagatctaaatatgatgctaaacatagttggaggacatcaggcagctatgcaaatgctaaaagataccatcaatgaggaagctgtagaatgggataggacacatccagtacatgcagggcctaatccaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtaaccctcaagaacaaatagcatggatgaca---------ggcaacccacccatt---ccagtgggagaaatctataaaagatggatagtcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacaagggccaaaggaacccttcagggactatgtagataggttctttaaaactctcagagctgagcaagcttcacaggaggtaaaaaattggatgacagacaccttgctggtc---caaaatgcgaatccagactgtaagaccatcttaaaagcattgggaccaggagctacattagaagagatgatgacagcatgtcagggagtgggaggacctagccataaagcaagagttttggctgaagcaatg------------agtcaggcacaa------------------------aatacaaacatactaatgcagaga---agcaat---tttaagggc---caaaaa---aga---attaagtgtttcaactgtggtaaggaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggaagatttgg---cct---tcccacaag---------ggg---aggccagggaactttcctcagagc------------------------------agaccg------gagccatcagcc---------------------------------------------------ccaccagca---gagagcttggggatgagg---------------gaagagata---acctcctct------------------------ctgaagcaggag---------------------------aaggagggg---------------------ggacagtct------cctcct---tta---gtttccctcaaatcactctttggcaacgacccattgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"AY093607",">Ref.09_cpx.US.99.99DE4057.AY093607","Ref","09_cpx","US","99","99DE4057","AY093607",64,2013,0,23,1447,1476,"gcgagagcgtcaatattaagcgg","ctctttggcaacgacccattgtcacagtaa",1,30,0,23,1,30,1984,2013,1447,1476,1984,2013,"gcgagagcgtcaatattaagcgggggaaaattagatgcatgggagaaaattcggttaaggccagggggaaagaaacaatatagaatgaaacatctagtatgggcaagcagagagctagaaagattcgcagttaaccctggccttttagaaacagcagaggggtgtcaacaaatactggaacagttacaaccagctctcaagacaggatcagaagaacttaaatcattatataatacagtagcaaccctttattgtgtacatcaaaggatagatgtaagagacaccaaggaagctttagataaaatagaggaaatacaaaataaaagcaagcaaaagacacagaacacagcagctaacacaggaagcaacagaaatgtcagccaaaattacccaatagtgcaaaacgcacaagggcaaatggtacatcaggccatgtcacctagaactttaaatgcatgggtgaaagtaatagaagaaaagggtttcaacccagaagtaatacccatgttcacagcattatcagagggagccaccccacaagatttaaatatgatgttaaacataattggaggacatcaagcagctatgcaaatgctaaaagataccattaatgaagaagctgcagaatgggatagggtacatccagtacatgcaggacctaatccaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtaaccttcaagaacaaatagcatggatgacaagcaatccacccatcccagtgggagaaatctataaaagatggatagtcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaacccttcagggactatgtagacaggttctttaaaactctcagggccgagcaggctacacaggatgtaaaaaattggatgacagaaaccttgctggtccaaaatgcgaatccagactgtaagaccattttaagagcattaggaccaggggctacattagaagagatgatgacagcatgtcagggagtgggaggacctggtcataaagcaagagttttggcagaagcaatgagtcaagtacaaaatacaaacatactaatgcagaggggcaattttaagggtcagaaaagaattaagtgtttcaactgtggcaaagaaggacacctggccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggaaggacaccaaatgaaggactgcactgagagacaggctaattttttagggaaaatttggccttccaacaaagggaggccagggaactttcctcagagcagaccggagccctcagctccgccagcagagaactttgggatgaaggaagaaatagcctcctctccaaaacaggagaacagccttcccttagtttccctcaaatcactctttggcaacgacccattgtcacagtaa","------gcgagagcgtcaatattaagcgggggaaaattagatgcatgggagaaaattcggttaaggccagggggaaagaaacaatatagaatgaaacatctagtatgggcaagcagagagctagaaagattcgcagttaaccctggccttttagaaacagcagaggggtgtcaacaaatactggaacagttacaaccagctctcaagacaggatcagaagaacttaaatcattatataatacagtagcaaccctttattgtgtacatcaaaggatagatgtaagagacaccaaggaagctttagataaaatagaggaaatacaa------------aat---------------------aaa---------------agcaag------caaaag---------------------------------acacagaacacagcagct---------------------------------aacacagga------------------------------------------------------------------------------------------agcaacagaaat------------------gtcagccaaaattacccaatagtgcaaaacgcacaagggcaaatggtacatcaggccatgtcacctagaactttaaatgcatgggtgaaagtaatagaa---gaaaagggtttcaacccagaagtaatacccatgttcacagcattatcagagggagccaccccacaagatttaaatatgatgttaaacataattggaggacatcaagcagctatgcaaatgctaaaagataccattaatgaagaagctgcagaatgggatagggtacatccagtacatgcaggacctaatccaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtaaccttcaagaacaaatagcatggatgaca---------agcaatccacccatc---ccagtgggagaaatctataaaagatggatagtcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaacccttcagggactatgtagacaggttctttaaaactctcagggccgagcaggctacacaggatgtaaaaaattggatgacagaaaccttgctggtc---caaaatgcgaatccagactgtaagaccattttaagagcattaggaccaggggctacattagaagagatgatgacagcatgtcagggagtgggaggacctggtcataaagcaagagttttggcagaagcaatg------------agtcaagtacaa------------------------aatacaaacatactaatgcagagg---ggcaat---tttaagggt---cagaaa---aga---attaagtgtttcaactgtggcaaagaaggacacctggccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggaaggacaccaaatgaaggactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaaa---------ggg---aggccagggaactttcctcagagc------------------------------agaccg------gagccctcagct---------------------------------------------------ccgccagca---gagaactttgggatgaag---------------gaagaaata---gcctcctct------------------------ccaaaacaggag------------------------------aacagc------------------------ctt------------ccc---tta---gtttccctcaaatcactctttggcaacgacccattgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","7rev,11fw,12rev","11fw","7rev,12rev",3,1,2
"AF289548",">Ref.10_CD.TZ.96.96TZ_BF061.AF289548","Ref","10_CD","TZ","96","96TZ_BF061","AF289548",65,2013,1,30,1474,1503,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgaccccttgtcacaataa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgaatgggaaaaaattcggctacggccagggggaaagaaacaatataaactaaaacatttagtatgggcaagcagggagctagaccgatttgcaattaatcctggccttttagaaacatcagaaggctgtaaacaaataataggacagctacaaccagctattcagacaggatcagaggaaattaaatcattatataatacagtagcaaccctctattgtgtacatgaaaggataaaggtagcagacaccaaggaagctttagacaagatagaggaagaacaaaccaaaagtaagaaaaaggcacagcaagcaacagctgacacaggaaacagcagccaggtcagccaaaattatcctatagtgcaaaatttacaggggcaaatggtacaccagcccttaacacctagaactttgaatgcgtgggtaaaagtagtagaggagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttgaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggataggctacatccagtacaggcagggcctgttgcaccaggccaaataagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataagatggatgacaagcaatccacctatcccagtaggagaaatctataaaagatggataatactagggttaaataaaatagtaagaatgtatagccctgtcagcattttagacataaggcaaggaccaaaggaaccctttagagattatgtagatcggttctataaaactctaagagccgagcaagcttcgcaggatgtaaaaaattggatgaccgaaaccttgttggtccaaaatgcgaacccagattgtaaaactatcttaaaagcattgggaccagcggctacattagaagaaatgatgacagcatgtcagggagtggggggacccagtcataaagcaagagttttagctgaggcaatgagccaggcaacaggtggaaatactataatgatgcagagaggcaattttaagggcccaaagaaaagcattaagtgtttcaactgtggcaaagaagggcacacagcaaaaaattgcagggctcctaggagaaggggctgttggaaatgtggaagggaaggacaccaactgaaagattgcccagaaagaagacaggctaattttttagggaaaatttggccttccaacaaaggaaggccagggaacttccttcagagcagaccagagccaacagctccaccagcagagagcttcgggtttggggaggagataacaccctctcagaaacaggagcagaaagacaaggagccgcatcccttagcttccctcaaatcactctttggcaacgaccccttgtcacaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgaatgggaaaaaattcggctacggccagggggaaagaaacaatataaactaaaacatttagtatgggcaagcagggagctagaccgatttgcaattaatcctggccttttagaaacatcagaaggctgtaaacaaataataggacagctacaaccagctattcagacaggatcagaggaaattaaatcattatataatacagtagcaaccctctattgtgtacatgaaaggataaaggtagcagacaccaaggaagctttagacaagatagaggaagaacaa------------acc---------------------aaa---------------agtaag------aaaaag---------------------------------gcacagcaagcaacagct---------------------------------gacacagga------------------------------------------------------------------------------------------aacagcagccag------------------gtcagccaaaattatcctatagtgcaaaatttacaggggcaaatggtacaccagcccttaacacctagaactttgaatgcgtgggtaaaagtagtagag---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttgaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggataggctacatccagtacaggcagggcctgttgcaccaggccaaataagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataagatggatgaca---------agcaatccacctatc---ccagtaggagaaatctataaaagatggataatactagggttaaataaaatagtaagaatgtatagccctgtcagcattttagacataaggcaaggaccaaaggaaccctttagagattatgtagatcggttctataaaactctaagagccgagcaagcttcgcaggatgtaaaaaattggatgaccgaaaccttgttggtc---caaaatgcgaacccagattgtaaaactatcttaaaagcattgggaccagcggctacattagaagaaatgatgacagcatgtcagggagtggggggacccagtcataaagcaagagttttagctgaggcaatg------------agccaggcaacaggt---------------------ggaaatactataatgatgcagaga---ggcaat---tttaagggc---ccaaag---aaaagcattaagtgtttcaactgtggcaaagaagggcacacagcaaaaaattgcagggctcctaggagaaggggctgttggaaatgtggaagggaaggacaccaactgaaagattgcccagaa------aga---agacaggctaattttttagggaaaatttgg---cct---tccaacaaa---------gga---aggccagggaacttccttcagagc------------------------------agacca------gagccaacagct---------------------------------------------------ccaccagca---gagagcttcgggtttggg---------------gaggagata---acaccctct------------------------cagaaacaggagcag------------------------aaagacaag---------------------gagccgcat---------ccc---tta---gcttccctcaaatcactctttggcaacgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,6rev,7rev,11fw,12rev","1fw,11fw","6rev,7rev,12rev",5,2,3
"AF289549",">Ref.10_CD.TZ.96.96TZ_BF071.AF289549","Ref","10_CD","TZ","96","96TZ_BF071","AF289549",66,2013,1,30,1474,1503,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgaccccttgtcacagtaa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgaatgggaaaaaattcggttacggccagggggaaagaaaaaatatagactaaaacatttagtatgggcaagcagggaactagaacgatttgcacttaatcctggccttttagaaacatcagaaggctgtaaacaaataataggacagctacaaccagctattcagacaggatcagaggaaattaaatcattatataatacagtagcaaccctctattgtgtacatgaaaggatacaggtaaaagacaccaaggaagcgttagacaagataggggaagaacaaaccaaaagtaagaaaaaggcacagcaagcaacagctgacacaagaaacagcagccaggtcagccaaaattatcctatagtgcaaaacacacagggacaaatggtgtatcagtccatatcacctagaactttgaacgcatgggtaaaagtaatagaggagaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagacttgaacaccatgctaaacacagtgggggggcatcaaggagccatgcaaatgctaaaggaaaccatcaatgaggaagctgcagaatgggataggctacatccagtgcatgcagggcctgttgcaccaggccaaatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataggatggatgacaggcaatccagttatcccagtaggagagatctataaaagatggataatcttagggttaaataaaatagtaagaatgtatagccctatcagcattttggacataagacaaggaccaaaggaaccctttagagattatgtagatcggttctataaaactctaagagccgagcaagcttcgcaggatgtaaaaaattggatgacagaaaccttgttggtccaaaatgcgaacccagattgtaaaactattttaaaagcattgggaccagcggctacactagaggaaatgatgacagcatgtcagggagtagggggacccggtcataaagcaagagtgttggctgaggcaatgagccaagcaacaaagggaaatgctataatgatgcagagaggcaattttaagggccccaagagaatcattaagtgtttcaactgtggcaaaggagggcacatagcaaaaaattgcagggctcctaggaaaaagggctgttggaaatgtggaagggaaggacaccaaatgaaagattgcactgaaagacaggctaattttttagggaaaatttggccttcccacaagggaaggccagggaacttccttcagagcagaccagagccaacagccccaccagcagagagcttcgggtttggggaggagatgacaccctttcagaaacaggaacagaaagacaaggaggagctgtatcttttagcttccctcaaatcactctttggcaacgaccccttgtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgaatgggaaaaaattcggttacggccagggggaaagaaaaaatatagactaaaacatttagtatgggcaagcagggaactagaacgatttgcacttaatcctggccttttagaaacatcagaaggctgtaaacaaataataggacagctacaaccagctattcagacaggatcagaggaaattaaatcattatataatacagtagcaaccctctattgtgtacatgaaaggatacaggtaaaagacaccaaggaagcgttagacaagataggggaagaacaa------------acc---------------------aaa---------------agtaag------aaaaag---------------------------------gcacagcaagcaacagct---------------------------------gacacaaga------------------------------------------------------------------------------------------aacagcagccag------------------gtcagccaaaattatcctatagtgcaaaacacacagggacaaatggtgtatcagtccatatcacctagaactttgaacgcatgggtaaaagtaatagag---gagaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagacttgaacaccatgctaaacacagtgggggggcatcaaggagccatgcaaatgctaaaggaaaccatcaatgaggaagctgcagaatgggataggctacatccagtgcatgcagggcctgttgcaccaggccaaatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataggatggatgaca---------ggcaatccagttatc---ccagtaggagagatctataaaagatggataatcttagggttaaataaaatagtaagaatgtatagccctatcagcattttggacataagacaaggaccaaaggaaccctttagagattatgtagatcggttctataaaactctaagagccgagcaagcttcgcaggatgtaaaaaattggatgacagaaaccttgttggtc---caaaatgcgaacccagattgtaaaactattttaaaagcattgggaccagcggctacactagaggaaatgatgacagcatgtcagggagtagggggacccggtcataaagcaagagtgttggctgaggcaatg------------agccaagcaacaaag---------------------ggaaatgctataatgatgcagaga---ggcaat---tttaagggc---cccaag---agaatcattaagtgtttcaactgtggcaaaggagggcacatagcaaaaaattgcagggctcctaggaaaaagggctgttggaaatgtggaagggaaggacaccaaatgaaagattgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tcccacaag---------gga---aggccagggaacttccttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggtttggg---------------gaggagatg---acacccttt------------------------cagaaacaggaacag------------------------aaagacaaggag------------------gagctgtat---------ctt---tta---gcttccctcaaatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,8rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,8rev,10rev,12rev",7,2,5
"AF289550",">Ref.10_CD.TZ.96.96TZ_BF110.AF289550","Ref","10_CD","TZ","96","96TZ_BF110","AF289550",67,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagcggg","gtctttggcaacgaccccttgtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgaatgggaaaaaatcagattacggccagggggaaagaaaaaatatagactaaaacatttagtatgggcaagcagggaactagaacgatttgcacttaatcctggcctgttagaaacatcagaaggctgtaaacaaataataggacagctacaaccatctattcagacagggtcagaggaaattaaatcattatataatacagtagcaaccctctattgtgtacatgaaaggataaaggtaacagacaccaaggaagctttagacaagatagaggaagaacaaaccaaaagtaagaagaaagcacaacaagcagcagctgacacaggaaacagcagccaggtcagccaaaattaccctatagtgcaaaacttacaagggcaaatggtacaccaacccttatcacctagaactttgaatgcgtgggtaaaagtaatagaggaaaaggctttcagcccagaggtaatacccatgtttacagcattatcagaaggagccaccccacaagatttgaacaccatgctaaacacagtagggggacatcaagcagcaatgcaaatgttaaaagaaacaatcaatgaggaagctgcagaatgggataggctacatccagcgcaggcagggcctattgcaccaggccaaataagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataacatggatgacaagcaatccacctatcccagtaggagagatctataaaagatgggtaatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaaggaccaaaggaaccctttagagattatgtagatcggttctataaaactctaagagccgagcaagcttcacaggatgtaaaaaattggatgacagaaaccttgttggtccaaaatgcaaacccagattgtaaaactatcttaaaagcattgggaccagcgacttcattagaagaaatgatgacagcatgtcagggagtggggggacccagtcataaagcaagagtgttggctgaggcaatgagccaagcaacaagtggaaatgctataatgatgcagagaggcaattttaagggcccaaagaaaaacattaagtgtttcaactgtggcaaagaaggacacatagcaagacattgcagggctcctaggaaaaagggctgttgggaatgtggaagggaaggacaccaaatgaaagattgcactgaaagacaggccaattttttagggagaatttggccttccaacaaaggaaggccagggaacttccttcagagcagaccagagccaacagccccaccagcagagagcttcgggtttggagaagagccctctcagaaacaggagcagaaagacaaggaactgtatcccttagcttccctcaaatcagtctttggcaacgaccccttgtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgaatgggaaaaaatcagattacggccagggggaaagaaaaaatatagactaaaacatttagtatgggcaagcagggaactagaacgatttgcacttaatcctggcctgttagaaacatcagaaggctgtaaacaaataataggacagctacaaccatctattcagacagggtcagaggaaattaaatcattatataatacagtagcaaccctctattgtgtacatgaaaggataaaggtaacagacaccaaggaagctttagacaagatagaggaagaacaa------------acc---------------------aaa---------------agtaag------aagaaa---------------------------------gcacaacaagcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------aacagcagccag------------------gtcagccaaaattaccctatagtgcaaaacttacaagggcaaatggtacaccaacccttatcacctagaactttgaatgcgtgggtaaaagtaatagag---gaaaaggctttcagcccagaggtaatacccatgtttacagcattatcagaaggagccaccccacaagatttgaacaccatgctaaacacagtagggggacatcaagcagcaatgcaaatgttaaaagaaacaatcaatgaggaagctgcagaatgggataggctacatccagcgcaggcagggcctattgcaccaggccaaataagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataacatggatgaca---------agcaatccacctatc---ccagtaggagagatctataaaagatgggtaatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaaggaccaaaggaaccctttagagattatgtagatcggttctataaaactctaagagccgagcaagcttcacaggatgtaaaaaattggatgacagaaaccttgttggtc---caaaatgcaaacccagattgtaaaactatcttaaaagcattgggaccagcgacttcattagaagaaatgatgacagcatgtcagggagtggggggacccagtcataaagcaagagtgttggctgaggcaatg------------agccaagcaacaagt---------------------ggaaatgctataatgatgcagaga---ggcaat---tttaagggc---ccaaag---aaaaacattaagtgtttcaactgtggcaaagaaggacacatagcaagacattgcagggctcctaggaaaaagggctgttgggaatgtggaagggaaggacaccaaatgaaagattgcact---------gaa---agacaggccaattttttagggagaatttgg---cct---tccaacaaa---------gga---aggccagggaacttccttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggtttgga---------------gaa---------gagccctct------------------------cagaaacaggagcag------------------------aaagacaag---------------------gaactgtat---------ccc---tta---gcttccctcaaatcagtctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,11fw,12rev","1fw,11fw","4rev,12rev",4,2,2
"AF492624",">Ref.11_cpx.CM.95.95CM_1816.AF492624","Ref","11_cpx","CM","95","95CM_1816","AF492624",68,2013,1,30,1462,1491,"atgggtgcgagagcgtcagtattaagcggc","ctctttggcagcgacccatcgtcacagtaa",1,30,1,30,1,30,1984,2013,1462,1491,1984,2013,"atgggtgcgagagcgtcagtattaagcggcggaaaattagataaatgggaaaaaattcggttaaggccagggggaagaaaacaatataggctgaaacatctagtatgggcaagcagggagctggaaagattcgcacttaaccctagccttttagaaacagcagaaggatgtcaacaaataatggtacaaatacaaccagctctcaatacaggaacagaagaacttagatcattatacaatacagtagcaaccctctattgcgtacatcagcagatagaggtaagagacaccaaggaggctttagataaaatagaggaaatacaaaataagagcaagcaaaagacacagcaggcagcagctgacacaggaaacagcagcaaggtcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatgatacaccaagccctatcacctagaactttgaatgcatgggtaaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttttcagcattgtcagaaggagccaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaagaagctgcagaatgggacaggatgcatccagtacaggcaggacctattccaccaggccagctgagagaaccaaggggaagtgatatagcaggaacaactagtacccctcaagaacaaataggatggatgacaggcaacccacctgtcccagtgggagaaatctatagaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggatataagacaagggccaaaagaacctttcagagattatgtagataggtttttcaaatgtctcagagctgagcaagctacacaggaggtaaaacaatggatgacagaaagcttgctggtccagaatgcgaatccagactgcaaatctattttaagagcattaggaacaggagctacattagaagaaatgatgacagcatgtcagggagtaggaggacccggccataaagcaagggttttggctgaggcaatgagccaagtacaacagacaaatataatgatgcaaagaggcaattttaagggccagaaaagaattaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgctggaaatgtgggaaggaaggacaccaaatgaaggactgcaccgagagacaggctaattttttagggaaaatttggccttccagcaaggggaggccagggaattttctccagagcaggccagagccaacagccccaccagcagagagcttcgggttcggagaggaggtagccccctcccagaaacaggagccgaaggaggagctatatcctttagcttccctcaaatcactctttggcagcgacccatcgtcacagtaa","atgggtgcgagagcgtcagtattaagcggcggaaaattagataaatgggaaaaaattcggttaaggccagggggaagaaaacaatataggctgaaacatctagtatgggcaagcagggagctggaaagattcgcacttaaccctagccttttagaaacagcagaaggatgtcaacaaataatggtacaaatacaaccagctctcaatacaggaacagaagaacttagatcattatacaatacagtagcaaccctctattgcgtacatcagcagatagaggtaagagacaccaaggaggctttagataaaatagaggaaatacaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------acacagcaggcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------aacagcagcaag------------------gtcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatgatacaccaagccctatcacctagaactttgaatgcatgggtaaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttttcagcattgtcagaaggagccaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaagaagctgcagaatgggacaggatgcatccagtacaggcaggacctattccaccaggccagctgagagaaccaaggggaagtgatatagcaggaacaactagtacccctcaagaacaaataggatggatgaca---------ggcaacccacctgtc---ccagtgggagaaatctatagaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggatataagacaagggccaaaagaacctttcagagattatgtagataggtttttcaaatgtctcagagctgagcaagctacacaggaggtaaaacaatggatgacagaaagcttgctggtc---cagaatgcgaatccagactgcaaatctattttaagagcattaggaacaggagctacattagaagaaatgatgacagcatgtcagggagtaggaggacccggccataaagcaagggttttggctgaggcaatg------------agccaagtacaa------------------------cagacaaatataatgatgcaaaga---ggcaat---tttaagggc---cagaaa---aga---attaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgctggaaatgtgggaaggaaggacaccaaatgaaggactgcacc---------gag---agacaggctaattttttagggaaaatttgg---cct---tccagcaag---------ggg---aggccagggaattttctccagagc------------------------------aggcca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcgga---------------gaggaggta---gccccctcc------------------------cagaaacaggagccg------------------------aaggag------------------------gagctatat---------cct---tta---gcttccctcaaatcactctttggcagcgacccatcgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,12rev",6,2,4
"AF492623",">Ref.11_cpx.CM.96.96CM_4496.AF492623","Ref","11_cpx","CM","96","96CM_4496","AF492623",69,2013,1,30,1465,1494,"atgggtgcgagagcgtcaatattaagcggg","ctctttggcagcgaccccttgtcacaataa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcaatattaagcggggggaaattagatgaatgggagaaaattcggttgaggccagggggaaggaaaagatataggctaaaacatctagtatgggcaggcagggagctggaaagattcgcacttaaccctagccttttagaaacagaygaaggatgtcaacaaataatgggacaattacaaccagctctcgggacaggaacagaagaacttaaatcattatrtaatacagtagcaaccctctattgcgtacatcgccggatgggcataaaagacaccaaggaggctttagataaaatagaggagatacaaaayaagagcmagcaaaagaaacagcaggcagcagctgacacaggagacaacagcaaagtcagtcaaaattaccccatagtgcaaaatgcacaagggcaaccaatacaccaggccatgtcgcctagaaccttgaatgcatgggtgaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggctacatccagtacatgcagggcctattccaccaggccagataagagaaccaaggggaagtgacatagcaggaacaactagtacccttcaagaacaaataggatggatgacaggcaacccacctatcccagtgggagaaatctatagaagatggataatcttgggattaaataaaatagtaagaatgtatagccctgttagcattttrgacataagacaagggccaaaagaacccttcagagattatgtagataggttctttaaaactctcagagctgagcaagctacacaggaggtaaaaagctggatgacagaaaccttgctgatccaaaatgcaaatccagactgcaagaccattttaagagcattaggagcaggagctacattagaagaaatgatgacagcatgccagggagtgggaggacccggccataaagcaagggttttggctgaggcaatgagccaagtacaacagacaaatataatgatgcagagaagcaattttaagggccagaaaagaattaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggaaggaaggacaccaaatgaaagactgcactgagagrcaggccaattttttagggaaaatttggccttccagcaaggggaggccagggaactttctccagaacaggccagagccaacagccccaccagcagagagcttcgggttcggagaggagatagccccctccccgaaacaggagccgaaggagaaagagctatatcctgtagcttccctcaaatcactctttggcagcgaccccttgtcacaataa","atgggtgcgagagcgtcaatattaagcggggggaaattagatgaatgggagaaaattcggttgaggccagggggaaggaaaagatataggctaaaacatctagtatgggcaggcagggagctggaaagattcgcacttaaccctagccttttagaaacagaygaaggatgtcaacaaataatgggacaattacaaccagctctcgggacaggaacagaagaacttaaatcattatrtaatacagtagcaaccctctattgcgtacatcgccggatgggcataaaagacaccaaggaggctttagataaaatagaggagatacaa------------aay---------------------aag---------------agcmag------caaaag---------------------------------aaacagcaggcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------gacaacagcaaa------------------gtcagtcaaaattaccccatagtgcaaaatgcacaagggcaaccaatacaccaggccatgtcgcctagaaccttgaatgcatgggtgaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggctacatccagtacatgcagggcctattccaccaggccagataagagaaccaaggggaagtgacatagcaggaacaactagtacccttcaagaacaaataggatggatgaca---------ggcaacccacctatc---ccagtgggagaaatctatagaagatggataatcttgggattaaataaaatagtaagaatgtatagccctgttagcattttrgacataagacaagggccaaaagaacccttcagagattatgtagataggttctttaaaactctcagagctgagcaagctacacaggaggtaaaaagctggatgacagaaaccttgctgatc---caaaatgcaaatccagactgcaagaccattttaagagcattaggagcaggagctacattagaagaaatgatgacagcatgccagggagtgggaggacccggccataaagcaagggttttggctgaggcaatg------------agccaagtacaa------------------------cagacaaatataatgatgcagaga---agcaat---tttaagggc---cagaaa---aga---attaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggaaggaaggacaccaaatgaaagactgcact---------gag---agrcaggccaattttttagggaaaatttgg---cct---tccagcaag---------ggg---aggccagggaactttctccagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcgga---------------gaggagata---gccccctcc------------------------ccgaaacaggagccg------------------------aaggagaaa---------------------gagctatat---------cct---gta---gcttccctcaaatcactctttggcagcgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,9fw,10rev,11fw,12rev","1fw,9fw,11fw","2rev,4rev,7rev,10rev,12rev",8,3,5
"AJ291718",">Ref.11_cpx.CM.97.MP818.AJ291718","Ref","11_cpx","CM","97","MP818","AJ291718",70,2013,1,30,1471,1500,"atgggtgcgagagcgtcagtattaagcggc","ctctttggcagcgacccatagttaaaataa",1,30,1,30,1,30,1984,2013,1471,1500,1984,2013,"atgggtgcgagagcgtcagtattaagcggcggaaaattagattcatgggagaaaattcggttaaggccagggggaaagaaaaaatataggctgaaacatttggtatgggcaagcagggagctggaaagattcgcacttaaccctagccttttagaaacaggagaaggatgtcaacaactaatgggacaattacaaccagctctcgggacaggaacagaagaacttagatcattatataatacattagcaactctctattgtgtacatcacaggatagagataaaagacaccaaggaggctttagataaaatagaggaaatacaaaataagagcaagcaaaagaaacagcaggcagcagctgacacaggaaacagcagcaatgtcagtcaaaattatcccatagtgcaaaatgcacaagggcaaatggtacaccagcctgtatcacctagaactttgaatgcatgggtgaaagtagtagaagaaaaggctttcagccccgaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggctacatccagtacaggcagggcctattgcaccaggccagatgagagacccaaggggaagtgacatagcaggaacaactagtacccttcaagaacaaatagggtggatgacaggcaacccacctatcccagtgggagatatctatagaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataaaacaagggccaaaagaacccttcagagactatgtagataggttttttaaagctctcagagctgaacaggctacacaggaagtaaaaggatggatgacagataccttactgatccaaaatgcaaatccagactgcaagtccattttaagagcattaggaacaggagctacattagaagaaatgatgacagcatgccagggagtgggaggacccagccataaagcaagggttttggctgaggcaatgagccaagtacaacagacaaatgtaatgatgcagagaagcaattttaagggccagaaaagaattaagtgcttcaactgtggcaaagaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaagtgtgggagggaaggacaccaaatgaaagactgcaccgagagacaggctaattttttagggaaaatttggccttccagcaaaggaaggccagggaactttctccagagcagaccagagccaacagccccaccagcagagagcttcgggttcggagaggagatagccccctccccgaaacaggagccgaaggagaaggagaaggagctatatcctttaacctccctcaaatcactctttggcagcgacccatagttaaaataa","atgggtgcgagagcgtcagtattaagcggcggaaaattagattcatgggagaaaattcggttaaggccagggggaaagaaaaaatataggctgaaacatttggtatgggcaagcagggagctggaaagattcgcacttaaccctagccttttagaaacaggagaaggatgtcaacaactaatgggacaattacaaccagctctcgggacaggaacagaagaacttagatcattatataatacattagcaactctctattgtgtacatcacaggatagagataaaagacaccaaggaggctttagataaaatagaggaaatacaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------aaacagcaggcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------aacagcagcaat------------------gtcagtcaaaattatcccatagtgcaaaatgcacaagggcaaatggtacaccagcctgtatcacctagaactttgaatgcatgggtgaaagtagtagaa---gaaaaggctttcagccccgaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggctacatccagtacaggcagggcctattgcaccaggccagatgagagacccaaggggaagtgacatagcaggaacaactagtacccttcaagaacaaatagggtggatgaca---------ggcaacccacctatc---ccagtgggagatatctatagaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataaaacaagggccaaaagaacccttcagagactatgtagataggttttttaaagctctcagagctgaacaggctacacaggaagtaaaaggatggatgacagataccttactgatc---caaaatgcaaatccagactgcaagtccattttaagagcattaggaacaggagctacattagaagaaatgatgacagcatgccagggagtgggaggacccagccataaagcaagggttttggctgaggcaatg------------agccaagtacaa------------------------cagacaaatgtaatgatgcagaga---agcaat---tttaagggc---cagaaa---aga---attaagtgcttcaactgtggcaaagaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaagtgtgggagggaaggacaccaaatgaaagactgcacc---------gag---agacaggctaattttttagggaaaatttgg---cct---tccagcaaa---------gga---aggccagggaactttctccagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcgga---------------gaggagata---gccccctcc------------------------ccgaaacaggagccg------------------------aaggagaag------------gagaag---gagctatat---------cct---tta---acctccctcaaatcactctttggcagcgacccatagttaaaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"AF408629",">Ref.12_BF.AR.97.A32879.AF408629","Ref","12_BF","AR","97","A32879","AF408629",71,2013,1,30,1471,1500,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccctagtcacaataa",1,30,1,30,1,30,1984,2013,1471,1500,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggagaattggatagatgggaaaaaattcggttaaggccaggaggaaagaaaaaatatagactaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctgacctattagaaacagcagaaggctgtcagaaaataatagcacagctacaaccatcccttcagacaggatcagaagagcttagatcattatacaatacaatagcagtcctctattttgtacatcaaaaggtagaggtaaaggacaccaaggaagctttagataagctagaggaagaacaaaacaaaagtcagcaaaagacacagcaaaagacgcagcaagcggcagctgacaaaggggtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacatcagtctatatcacctagaactttaaatgcatgggtaaaggtgatagaagagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtgggaggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcagggcctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagacatttataaaagatggatcatcctagggttaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaaggaccaaaggaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaagcttcacaggaagtaaaaggttggatgacagacaccttgttggtccaaaatgcgaacccagactgtaaaaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcaaggagtgggaggacctggccataaggcaagggttttggctgaggcaatgagccaagcaacaaatacagctgtaatgatgcagaaaagtaactttaagggccaaagaagaattgttaaatgtttcaattgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaagggcaccaaatgaaagactgtactgaaagacaggctaattttttagggagactttggccttccaacaagggaaggccagggaatttccttcagaacaggccagagccaacagcccctccagcagagagctttgggttcggagaggggataaccccctctccgaagcaggagcagaaagacgagggactgtaccctcccttagcttccctcaaatcactctttggcaacgacccctagtcacaataa","atgggtgcgagagcgtcagtattaagcgggggagaattggatagatgggaaaaaattcggttaaggccaggaggaaagaaaaaatatagactaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctgacctattagaaacagcagaaggctgtcagaaaataatagcacagctacaaccatcccttcagacaggatcagaagagcttagatcattatacaatacaatagcagtcctctattttgtacatcaaaaggtagaggtaaaggacaccaaggaagctttagataagctagaggaagaacaa------------aac---------------------aaa---------------agtcag------caaaag---------------acacagcaaaag------acgcagcaagcggcagct---------------------------------gacaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacatcagtctatatcacctagaactttaaatgcatgggtaaaggtgatagaa---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtgggaggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcagggcctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagacatttataaaagatggatcatcctagggttaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaaggaccaaaggaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaagcttcacaggaagtaaaaggttggatgacagacaccttgttggtc---caaaatgcgaacccagactgtaaaaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcaaggagtgggaggacctggccataaggcaagggttttggctgaggcaatg------------agccaagcaaca------------------------aatacagctgtaatgatgcagaaa---agtaac---tttaagggc---caaaga---agaattgttaaatgtttcaattgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaagggcaccaaatgaaagactgtact---------gaa---agacaggctaattttttagggagactttgg---cct---tccaacaag---------gga---aggccagggaatttccttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------cctccagca---gagagctttgggttcgga---------------gaggggata---accccctct------------------------ccgaagcaggagcag------------------------aaagacgag---------------------ggactgtac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccctagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,10rev,12rev",6,2,4
"AF408630",">Ref.12_BF.AR.97.A32989.AF408630","Ref","12_BF","AR","97","A32989","AF408630",72,2013,1,30,1459,1488,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccatagtcacaataa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggagaattggatagatgggaaaaaattcggttacggccagggggaaagaaaaaatatagattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctattagaaacatcagaaggctgtcgaaaaataataggacagctacaaccatcccttcagacaggatcagaagagcttagatcattatataatacaatagtagtcctctattttgtacatcgaaaggtagaggtaaaagacaccaaggaagctttagataagctagaggaagaacaaaacaaaagtcagcaaaaggcacagcaagcggcagctgacaaaggggtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacaccaggctttatcacctaaaactttaaatgcatgggtaaaggtggtagaagagaaagcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccaccccacaagatttaaacaccatgttaaatacagtgggtggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcagggcctatcccaccaggccagatgagggaacctaggggaagtgacatagctggaactactagtaaccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttgggcataagacaagggccaaaagaaccttttagagactatgtagacaggttctttaaaaccctaagagctgagcaagctacacaggaagtaaaagggtggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccatattaaaagcattgggaccaggggctacgctagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaggcaatgagccaagtaacaaatacaactgtaatgatgcagaaaagtaactttaagggcccaagaagaattattaaatgtttcaattgtggcagagaaggccacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccaacagggggaggccaggaaatttccttcagaacaggccagaaccaacagccccaccagcagagagctttgggttcggagaggagataaccccctctccgaagcaggagcagaaagacgagggacagtaccctcccttagcttccctcaaatcactctttggcaacgacccatagtcacaataa","atgggtgcgagagcgtcagtattaagcgggggagaattggatagatgggaaaaaattcggttacggccagggggaaagaaaaaatatagattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctattagaaacatcagaaggctgtcgaaaaataataggacagctacaaccatcccttcagacaggatcagaagagcttagatcattatataatacaatagtagtcctctattttgtacatcgaaaggtagaggtaaaagacaccaaggaagctttagataagctagaggaagaacaa------------aac---------------------aaa---------------agtcag------caaaag---------------------------------gcacagcaagcggcagct---------------------------------gacaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacaccaggctttatcacctaaaactttaaatgcatgggtaaaggtggtagaa---gagaaagcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccaccccacaagatttaaacaccatgttaaatacagtgggtggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcagggcctatcccaccaggccagatgagggaacctaggggaagtgacatagctggaactactagtaaccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttgggcataagacaagggccaaaagaaccttttagagactatgtagacaggttctttaaaaccctaagagctgagcaagctacacaggaagtaaaagggtggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccatattaaaagcattgggaccaggggctacgctagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaggcaatg------------agccaagtaaca------------------------aatacaactgtaatgatgcagaaa---agtaac---tttaagggc---ccaaga---agaattattaaatgtttcaattgtggcagagaaggccacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacagg---------ggg---aggccaggaaatttccttcagaac------------------------------aggcca------gaaccaacagcc---------------------------------------------------ccaccagca---gagagctttgggttcgga---------------gaggagata---accccctct------------------------ccgaagcaggagcag------------------------aaagacgag---------------------ggacagtac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccatagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,10rev,11fw,12rev","1fw,11fw","10rev,12rev",4,2,2
"AF385936",">Ref.12_BF.AR.99.ARMA159.AF385936","Ref","12_BF","AR","99","ARMA159","AF385936",73,2013,1,30,1459,1488,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccctagtcataataa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggagaattagatagatgggaaaaaattcggttgaggccagggggaaagaaaaaatatagattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctattagaaacatcagaaggctgtcgaaaaattataggacagctacaaccatcccttcagacaggatcagaagagcttagatcattatttaatacagtagcagtcctctattgtgtacatcaaaagatagaggtaaaggacaccaaggaagctttagagaagctagaggaagaacaaaacaaaagtcagcaaaaaacacagcaagcggcagctgacaaaggggtcagtcagaattaccctatagtacagaatcttcagggacaaatggtacaccagcctttatcacctagaactttaaatgcctgggtaaaggtggtagaagagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtaggaggacatcaagcagctatgcaaatgttaaaagacaccatcaatgaggaagctgcagactgggacagattacatccagtgcatgcaggacctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctaccagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaagctacacaggaagtaaagaattggatgacagacaccttgttggtccaaaatgcgaacccagattgtaaaaccattttaaaagcattgggatcaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaagcaatgagccaagcaacaagtacagctgtactgatgcagaaaagtagctttaatggccaaagaagaattgttaaatgtttcaattgtggcaaaacaggacacatagccaaaaattgcaaggctcctagaaaaaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagactgccctgaaagacaggctaattttttagggaaaatttggccttccaacaaggggaggcccggaaatttccttcagaacaggccagagccaacagccccgccagcagagagctttgggttcggagaggagataacctcctctccgaagcgggagcagaaagacgagggacagtaccctcccttagcttccctcaaatcactctttggcaacgacccctagtcataataa","atgggtgcgagagcgtcagtattaagcgggggagaattagatagatgggaaaaaattcggttgaggccagggggaaagaaaaaatatagattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctattagaaacatcagaaggctgtcgaaaaattataggacagctacaaccatcccttcagacaggatcagaagagcttagatcattatttaatacagtagcagtcctctattgtgtacatcaaaagatagaggtaaaggacaccaaggaagctttagagaagctagaggaagaacaa------------aac---------------------aaa---------------agtcag------caaaaa---------------------------------acacagcaagcggcagct---------------------------------gacaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcagaattaccctatagtacagaatcttcagggacaaatggtacaccagcctttatcacctagaactttaaatgcctgggtaaaggtggtagaa---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtaggaggacatcaagcagctatgcaaatgttaaaagacaccatcaatgaggaagctgcagactgggacagattacatccagtgcatgcaggacctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctaccagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaagctacacaggaagtaaagaattggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaaaaccattttaaaagcattgggatcaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaagcaatg------------agccaagcaaca------------------------agtacagctgtactgatgcagaaa---agtagc---tttaatggc---caaaga---agaattgttaaatgtttcaattgtggcaaaacaggacacatagccaaaaattgcaaggctcctagaaaaaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagactgccct---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggcccggaaatttccttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccgccagca---gagagctttgggttcgga---------------gaggagata---acctcctct------------------------ccgaagcgggagcag------------------------aaagacgag---------------------ggacagtac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccctagtcataataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,7rev,11fw,12rev","1fw,11fw","7rev,12rev",4,2,2
"DQ845388",">Ref.13_cpx.CM.02.02CM_A1394.DQ845388","Ref","13_cpx","CM","02","02CM_A1394","DQ845388",74,2013,1,30,1498,1527,"atgggtgcgagagcgtcggtattaagcggg","ctctttggcagcgacccctagttacagtaa",1,30,1,30,1,30,1984,2013,1498,1527,1984,2013,"atgggtgcgagagcgtcggtattaagcgggggaaaattagatcaatgggaaaaaattcggttaagaccagggggaaagaaaaaatatagaatgaagcatctagtatgggcaagcagggaactggagagatttgcaattaaccctggtcttttagaaacaacagaaggttgtcaacgaatactggtacagttgcaaccatcactccagacaggatcagaggagcttaaatcattatataatacagtagcaaccctctattgtgtacatcaaaaaatagaggtaagagacaccaaagaagctctagaggaagtggaaaaggcacaaaagagcagtcagcaaaaaacacagcaggcagcgagggctgaaggaaacagcaaccaagtcagtcaaaattatcctatagtgcagaatgcacaagggcaaatgatacaccaggccatatcacctagaactttgaatgcatgggtaaaagtaatagaagaaaaggccttcagtccagaggtaatacccatgttttcagcattatcagaaggggctaccccacaagatctaaacaccatgctaaacacagtgggggggcatcaagcagctatgcaaatgctaaaagatactatcaatgaggaagctgcggagtgggacaggctacatccaccacaagcagggcctgttgcaccaggccaaataagagacccaaggggaggtgatatagcaggaactactagtaccctgcaagaacaaataacatggatgaccagcaacccacctatcccagtaggagaaatttataaaagatggataatcctagggttaaacaaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagattatgtagataggttctttaaaactttgagagctgagcaagcttcacaggaagtaaaaggttggatgacagacaccttgctggtccaaaatgcgaacccagattgtaagatcatcttaaaaggattaggatcaggggcttcactagaagaaatgatgacagcatgtcagggagtaggaggacccagccataaagcaagagtgttagctgaagcaatgagccaggcatcaggagcagcagcagcagccataatgatgcagaaaggcaattttaagggcccaagaagaaatattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaagggagggacatcaaatgaaagactgcacagagagacaggctaattttttagggaaaatctggcctcccagcgggaggccagggaatttccttcagaacagaccaggaccaacagccccaccagagagcaggccagagccaacagccccaccagcagagagcttcgggttcggggaggagatagcctctcccccgaagcaggagccgaaggagttatatcctttaactgccctcaaatcactctttggcagcgacccctagttacagtaa","atgggtgcgagagcgtcggtattaagcgggggaaaattagatcaatgggaaaaaattcggttaagaccagggggaaagaaaaaatatagaatgaagcatctagtatgggcaagcagggaactggagagatttgcaattaaccctggtcttttagaaacaacagaaggttgtcaacgaatactggtacagttgcaaccatcactccagacaggatcagaggagcttaaatcattatataatacagtagcaaccctctattgtgtacatcaaaaaatagaggtaagagacaccaaagaagctctagaggaagtggaaaaggcacaa------------aag---------------------agc---------------agtcag------caaaaa---------------------------------acacagcaggcagcgagg------------------------------gctgaa---gga------------------------------------------------------------------------------------------aacagcaaccaa------------------gtcagtcaaaattatcctatagtgcagaatgcacaagggcaaatgatacaccaggccatatcacctagaactttgaatgcatgggtaaaagtaatagaa---gaaaaggccttcagtccagaggtaatacccatgttttcagcattatcagaaggggctaccccacaagatctaaacaccatgctaaacacagtgggggggcatcaagcagctatgcaaatgctaaaagatactatcaatgaggaagctgcggagtgggacaggctacatccaccacaagcagggcctgttgcaccaggccaaataagagacccaaggggaggtgatatagcaggaactactagtaccctgcaagaacaaataacatggatgacc---------agcaacccacctatc---ccagtaggagaaatttataaaagatggataatcctagggttaaacaaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagattatgtagataggttctttaaaactttgagagctgagcaagcttcacaggaagtaaaaggttggatgacagacaccttgctggtc---caaaatgcgaacccagattgtaagatcatcttaaaaggattaggatcaggggcttcactagaagaaatgatgacagcatgtcagggagtaggaggacccagccataaagcaagagtgttagctgaagcaatg------------agccaggcatcaggagca------------gca---gcagcagccataatgatgcagaaa---ggcaat---tttaagggc---ccaaga---agaaatattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaagggagggacatcaaatgaaagactgcaca---------gag---agacaggctaattttttagggaaaatctgg---cct---cccagc------------ggg---aggccagggaatttccttcagaacagaccaggaccaacagccccaccagagagcaggcca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcggg---------------gaggagata---gcctctccc------------------------ccgaagcaggagccg------------------------aag---------------------------gagttatat---------cct---tta---actgccctcaaatcactctttggcagcgacccctagttacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"DQ845387",">Ref.13_cpx.CM.04.04CM_632_28.DQ845387","Ref","13_cpx","CM","04","04CM_632_28","DQ845387",75,2013,1,30,1498,1527,"atgggtgcgagagcgtcagtgttaagtggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1498,1527,1984,2013,"atgggtgcgagagcgtcagtgttaagtgggggaaaattagatagctgggaaagaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatctagtatgggcaagcagggaactggagagatttgcacttaaccctggccttttagagacaacagaaggttgtcaacaaataatgagacagttgcaaccatctctccagacaggatcagaagagcttaaatcattatttaatacagtagcagtcctctattgtgtacataaaaggatagagataaaagacaccaaagaagctctagaggaagtggagaaggcacaaaagaacaatcagcaaagaacacagcaggcagcaagggatgagggaaacagaaaccaagtcagtcaaaattatcctatagtgcagaatgcacaagggcaaccagtacaccaggccctatcacctagaaccttgaatgcatgggtaaaagtagtagaagaaaaggccttcaatccagaagtaatacccatgttttcagcattatcagaaggggctaccccacaagatttaaacaccatgctaaacacagtaggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacagactgcatccaccacaagcagggcctcttccaccaggccagataagagaaccaaggggaagcgatatagcaggaaccactagtaccctgcaggaacaaataacatggatgaccggcaacccacctatcccagtgggagaaatttataaaagatggataatcatgggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacaagggccaaaagagccctttagagattatgtagacagattctttaaaactttgagagctgagcaagctacacaggaagtaaaaaactggatgacagataccttattggtccaaaatgcgaacccagattgtaagcacatcttaaaagcattaggaacaggggctacactagaggaaatgatgacagcatgtcagggagtgggaggacctggccacaaagcaagagttttagctgaagcaatgagccaggcaacaacaagtgcagcagccataatgatgcagaaaagcaattttaagggcccaaaaagaaatattaagtgctttaactgtggcaaagaaggacatctagccagaaattgcagggcccctaggaaaaggggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcacggaaagacaggctaattttttaggaaaagtctggccttccagcaaggggaggccagggaactttcttcagagccaaccaggaccaacagccccaccagagagcaggccagagccaacagccccaccagcagaggtcttcgggttcggagaggagatagccccctccccgaagcaggagcagaaggarytatatcccttaactgccctcaaatcactctttggcagcgacccctagtcacagtaa","atgggtgcgagagcgtcagtgttaagtgggggaaaattagatagctgggaaagaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatctagtatgggcaagcagggaactggagagatttgcacttaaccctggccttttagagacaacagaaggttgtcaacaaataatgagacagttgcaaccatctctccagacaggatcagaagagcttaaatcattatttaatacagtagcagtcctctattgtgtacataaaaggatagagataaaagacaccaaagaagctctagaggaagtggagaaggcacaa------------aag---------------------aac---------------aatcag------caaaga---------------------------------acacagcaggcagcaagg---------------------------------gatgaggga------------------------------------------------------------------------------------------aacagaaaccaa------------------gtcagtcaaaattatcctatagtgcagaatgcacaagggcaaccagtacaccaggccctatcacctagaaccttgaatgcatgggtaaaagtagtagaa---gaaaaggccttcaatccagaagtaatacccatgttttcagcattatcagaaggggctaccccacaagatttaaacaccatgctaaacacagtaggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacagactgcatccaccacaagcagggcctcttccaccaggccagataagagaaccaaggggaagcgatatagcaggaaccactagtaccctgcaggaacaaataacatggatgacc---------ggcaacccacctatc---ccagtgggagaaatttataaaagatggataatcatgggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacaagggccaaaagagccctttagagattatgtagacagattctttaaaactttgagagctgagcaagctacacaggaagtaaaaaactggatgacagataccttattggtc---caaaatgcgaacccagattgtaagcacatcttaaaagcattaggaacaggggctacactagaggaaatgatgacagcatgtcagggagtgggaggacctggccacaaagcaagagttttagctgaagcaatg------------agccaggcaacaacaagt------------------gcagcagccataatgatgcagaaa---agcaat---tttaagggc---ccaaaa---agaaatattaagtgctttaactgtggcaaagaaggacatctagccagaaattgcagggcccctaggaaaaggggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcacg---------gaa---agacaggctaattttttaggaaaagtctgg---cct---tccagcaag---------ggg---aggccagggaactttcttcagagccaaccaggaccaacagccccaccagagagcaggcca------gagccaacagcc---------------------------------------------------ccaccagca---gaggtcttcgggttcgga---------------gaggagata---gccccctcc------------------------ccgaagcaggagcag------------------------aag---------------------------garytatat---------ccc---tta---actgccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"AF460972",">Ref.13_cpx.CM.96.96CM_1849.AF460972","Ref","13_cpx","CM","96","96CM_1849","AF460972",76,2013,1,30,1501,1530,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccatagtcatagtaa",1,30,1,30,1,30,1984,2013,1501,1530,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagataaatgggaaaaaattcggttgaggccagggggaaagaaaagatacagaatgaaacatctagtatgggcaagcagggaactggagagatttgcacttaaccctggccttttagaaacaacagaaggttgtcaacaaatactgagacagttgcaaccatctctccagacaggatcagaggagcttaaatcattatataatacagtagcaaccctctattgtgtacaccaaaggatagaggtaaaagacaccaaagaagctctagaggaagtggaaaaggtacaaaatagcagccagcaaagaacacagcaggcagcaaagaatgaaggaaacagcaaccaagtcagtcaaaattatcctatagtgcagaatgcacaagggcaaatggtgcaccagtccatatcacctagaactttgaatgcatgggtaaaagtagtagaagaaaaggccttcagtccagaagtgatacccatgttttcagcattatcagaaggggctaccccacaagatttaaacaccatgctaaacacagtgggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagaatgggataggatgcatccacaacgagcagggccttttccaccaggccaaataagagaaccaaggggaagtgatatagcgggaaccactagtaccctgcaggaacaaataacatggatgaccaataacccacctatcccagtgggagaaatttataaaagatggataatcctggggttgaataaaatagtaagaatgtatagccctgtcagcattctggacataagacaagggccaaaagaaccctttagagattatgtagacaggttctttaaaactttgagagctgagcaagctacacaggatgtaaaaaactggatgacagacaccttgttggtccaaaatgcgaatccagattgtaagaccatcttaagagcattaggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacccggccataaagcaagagttttagctgaagcaatgagccaggcctcaagtgcagcagcagcagccataatgatgcagaaaagcaattttaagggcccaaaaagaattattaagtgtttcaactgtggcagggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcatggaaagacaggctaattttttagggaaaatctggccttccaacaaagggaggccagggaattttcttcagagcagaccaggaccaacagccccaccagagagcagaccagagccaacagccccaccagcagagagcttcgggttcggagaggagatagccccctcccagaagcaggaaccgaaggagacatatcccttagctgccctcaaatcactctttggcagcgacccatagtcatagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagataaatgggaaaaaattcggttgaggccagggggaaagaaaagatacagaatgaaacatctagtatgggcaagcagggaactggagagatttgcacttaaccctggccttttagaaacaacagaaggttgtcaacaaatactgagacagttgcaaccatctctccagacaggatcagaggagcttaaatcattatataatacagtagcaaccctctattgtgtacaccaaaggatagaggtaaaagacaccaaagaagctctagaggaagtggaaaaggtacaa------------aat---------------------agc---------------agccag------caaaga---------------------------------acacagcaggcagcaaag---------------------------------aatgaagga------------------------------------------------------------------------------------------aacagcaaccaa------------------gtcagtcaaaattatcctatagtgcagaatgcacaagggcaaatggtgcaccagtccatatcacctagaactttgaatgcatgggtaaaagtagtagaa---gaaaaggccttcagtccagaagtgatacccatgttttcagcattatcagaaggggctaccccacaagatttaaacaccatgctaaacacagtgggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagaatgggataggatgcatccacaacgagcagggccttttccaccaggccaaataagagaaccaaggggaagtgatatagcgggaaccactagtaccctgcaggaacaaataacatggatgacc---------aataacccacctatc---ccagtgggagaaatttataaaagatggataatcctggggttgaataaaatagtaagaatgtatagccctgtcagcattctggacataagacaagggccaaaagaaccctttagagattatgtagacaggttctttaaaactttgagagctgagcaagctacacaggatgtaaaaaactggatgacagacaccttgttggtc---caaaatgcgaatccagattgtaagaccatcttaagagcattaggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacccggccataaagcaagagttttagctgaagcaatg------------agccaggcctcaagtgca------------gca---gcagcagccataatgatgcagaaa---agcaat---tttaagggc---ccaaaa---agaattattaagtgtttcaactgtggcagggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcatg---------gaa---agacaggctaattttttagggaaaatctgg---cct---tccaacaaa---------ggg---aggccagggaattttcttcagagcagaccaggaccaacagccccaccagagagcagacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcgga---------------gaggagata---gccccctcc------------------------cagaagcaggaaccg------------------------aag---------------------------gagacatat---------ccc---tta---gctgccctcaaatcactctttggcagcgacccatagtcatagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"AF450096",">Ref.14_BG.ES.00.X605.AF450096","Ref","14_BG","ES","00","X605","AF450096",77,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccatagtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttgaggccagggggaaagaaaaaatatagactgaaacatttagtatgggcaagcagggagctggaaagatttgcacttaaccctgaccttttagaaacagcagatggttgtcaacaaataatgggacagttgcaaccagcgctccagacaggaacagaggagattagatcattatttaatacagtagcaacactctattgtgtacatcaaaagatagaggtaaaagacaccaaagaagctctagaggaagtggaaaaggcacagaagaaaagtcagaaacaacagcaggcagcaagggacgaaggaaacaacagccaagccagccaaaattatcctatagtacagaatgcacaagggcaaatggtacatcaggccatatcacccagaactttaaatgcatgggtaaaagtagtagaagaaaaggccttcagtccagaagtaatacctatgttttcagcattatcagaaggagccaccccgcaagatttaaataccatgctaaayacagtaggggggcatcaggcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggatgcatccacaacaggcagggcctatcccaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagtaccctgcaggaacaaataagatggatgaccagcaatccacctatcccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacaagggccaaaagaaccttttagagattatgtagataggttctttaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacccggtcacaaagcaagagttttagctgaggcaatgagcctggcatcaggggcaacaataatgatgcaaaaaagcaattttaagggtccaaaaagaaatattaagtgtttcaactgtggcagggaaggacacctagctagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcacagagagcaaggctaattttttagggaaaatttggccttccaacaaggggaggccaggaaattttctccagaacaggccagagccaacagccccacccgcagagagctttgggttcggagaggagatagccccctccccgaagcaagagccgaaggaaaaggaggtataccccttagcctccctcaaatcactctttggcagcgacccatagtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttgaggccagggggaaagaaaaaatatagactgaaacatttagtatgggcaagcagggagctggaaagatttgcacttaaccctgaccttttagaaacagcagatggttgtcaacaaataatgggacagttgcaaccagcgctccagacaggaacagaggagattagatcattatttaatacagtagcaacactctattgtgtacatcaaaagatagaggtaaaagacaccaaagaagctctagaggaagtggaaaaggcacag------------aag---------------------aaa---------------agtcag------aaacaa------------------------------------cagcaggcagcaagg---------------------------------gacgaagga------------------------------------------------------------------------------------------aacaacagccaa------------------gccagccaaaattatcctatagtacagaatgcacaagggcaaatggtacatcaggccatatcacccagaactttaaatgcatgggtaaaagtagtagaa---gaaaaggccttcagtccagaagtaatacctatgttttcagcattatcagaaggagccaccccgcaagatttaaataccatgctaaayacagtaggggggcatcaggcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggatgcatccacaacaggcagggcctatcccaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagtaccctgcaggaacaaataagatggatgacc---------agcaatccacctatc---ccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacaagggccaaaagaaccttttagagattatgtagataggttctttaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacccggtcacaaagcaagagttttagctgaggcaatg------------agcctggcatca------------------------ggggcaacaataatgatgcaaaaa---agcaat---tttaagggt---ccaaaa---agaaatattaagtgtttcaactgtggcagggaaggacacctagctagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcaca---------gag---agcaaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccaggaaattttctccagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccacccgca---gagagctttgggttcgga---------------gaggagata---gccccctcc------------------------ccgaagcaagagccg------------------------aaggaaaag---------------------gaggtatac---------ccc---tta---gcctccctcaaatcactctttggcagcgacccatagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"AF450097",">Ref.14_BG.ES.00.X623.AF450097","Ref","14_BG","ES","00","X623","AF450097",78,2013,1,30,1465,1494,"atgggtgcgagagcgtcaatattaagcggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcaatattaagcgggggaaaattagatgcatgggaaagaattcggttgaggccagggggaaagaaaaaatataaactaaaacatttagtatgggcaagcagggagctggatagatttgcactcaaccctgaccttttagaaacagcagaaggttgtcaacaaataatgggacagttgcaaccagctctcaagacaggaacagaggagattagatcattatttaatacagtagcaacactctattgtgtacatcaaaagatagaggtaaaagacaccaaagaagctctagaggaagtggaaaaggcacaaaagaaaagtcagaaaaaacaacaggcaacaatggacgaaggaaacaacagccaggccagccaaaattatcctatagtgcagaatgcacaagggcaaatggtacatcaggccatatcacccagaactttaaatgcatgggtaaaagtagtagaagaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccgcaagatttaaataccatgctaaacacagtaggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacagactgcatccaccacaggcagggcctatcccaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagtaccctgcaggagcaaataacttggatgaccggcaatccacctatcccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacaagggccaaaagagccttttagagattatgtagataggttctttaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacccagtcacaaagcaagagttttagctgaggcaatgagccaggcatcaggggcaacaataatgatgcaaagaagcaattttaagggtccaggaagaaagattaagtgtttcaactgtggcaaggaaggacacctagctagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagaatgcacagagagacaggctaattttttagggaaaatttggccttccaacaaggggaggccaggaaattttctccagaacaggccaaagccaacagccccacccgcagagagcttcgggttcggagaggagatagccccctccccgaagcaagagccgaaggagagggaggtttaccccttagcctccctcaaatcactctttggcagcgacccctagtcacagtaa","atgggtgcgagagcgtcaatattaagcgggggaaaattagatgcatgggaaagaattcggttgaggccagggggaaagaaaaaatataaactaaaacatttagtatgggcaagcagggagctggatagatttgcactcaaccctgaccttttagaaacagcagaaggttgtcaacaaataatgggacagttgcaaccagctctcaagacaggaacagaggagattagatcattatttaatacagtagcaacactctattgtgtacatcaaaagatagaggtaaaagacaccaaagaagctctagaggaagtggaaaaggcacaa------------aag---------------------aaa---------------agtcag------aaaaaa------------------------------------caacaggcaacaatg---------------------------------gacgaagga------------------------------------------------------------------------------------------aacaacagccag------------------gccagccaaaattatcctatagtgcagaatgcacaagggcaaatggtacatcaggccatatcacccagaactttaaatgcatgggtaaaagtagtagaa---gaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccgcaagatttaaataccatgctaaacacagtaggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacagactgcatccaccacaggcagggcctatcccaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagtaccctgcaggagcaaataacttggatgacc---------ggcaatccacctatc---ccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacaagggccaaaagagccttttagagattatgtagataggttctttaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacccagtcacaaagcaagagttttagctgaggcaatg------------agccaggcatca------------------------ggggcaacaataatgatgcaaaga---agcaat---tttaagggt---ccagga---agaaagattaagtgtttcaactgtggcaaggaaggacacctagctagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagaatgcaca---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccaggaaattttctccagaac------------------------------aggcca------aagccaacagcc---------------------------------------------------ccacccgca---gagagcttcgggttcgga---------------gaggagata---gccccctcc------------------------ccgaagcaagagccg------------------------aaggagagg---------------------gaggtttac---------ccc---tta---gcctccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"GU230137",">Ref.14_BG.PT.00.00PTHDE10.GU230137","Ref","14_BG","PT","00","00PTHDE10","GU230137",79,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagaggg","ctctttggcagcgacccctagtcaccgtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagagggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagggagctggaaagatttgcactcaaccctgaccttttagaaacagcagaaggttgtcaacaaataatgggacagttacaaccagctctccagacaggaacagaggagattagatcattatttaatgcagtagcaacactctattgtgtacatcacaggatagaggtaaaagacaccaaagaagctctagaggaagtggagaaggcacagaagaaaagtcagaaaaaacagcaggcagcaatgaacgaaggaaataacagccaagccagccaaaattatcctatagtgcagaatgcacaagggcaaatggtatatcaggccatatcacccagaactttaaatgcatgggtaaaagtagtagaagaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccgcaagatttaaacaccatgctaaacacagtaggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggatacatccaccacaggcagggcctatcccaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagtaccccgcaggaacaaataacatggatgaccagcaatccacctatcccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacaagggccaaaagaaccttttagagattatgtagataggttctttaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacccagtcacaaagcaagagtgttagctgaggcaatgagccagacatcaggagcagcaataatgatgcaaaaaggcaattttaagggtccaggaagaaagattaagtgtttcaactgtggcaaggaaggacacctagctagaaattgcagggctcctagaaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaggactgcacagagagacaggctaattttttagggaaaatttggccttccaacaaggggaggccagggaattttcttcagaacaggccagagccaacagccccacccgcagagagcttcgggttcggagaggagatagccccctccccgaagcgagagccgaaggaacaggagtcataccccttagcctccctcaaatcactctttggcagcgacccctagtcaccgtaa","atgggtgcgagagcgtcagtattaagagggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagggagctggaaagatttgcactcaaccctgaccttttagaaacagcagaaggttgtcaacaaataatgggacagttacaaccagctctccagacaggaacagaggagattagatcattatttaatgcagtagcaacactctattgtgtacatcacaggatagaggtaaaagacaccaaagaagctctagaggaagtggagaaggcacag------------aag---------------------aaa---------------agtcag------aaaaaa------------------------------------cagcaggcagcaatg---------------------------------aacgaagga------------------------------------------------------------------------------------------aataacagccaa------------------gccagccaaaattatcctatagtgcagaatgcacaagggcaaatggtatatcaggccatatcacccagaactttaaatgcatgggtaaaagtagtagaa---gaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccgcaagatttaaacaccatgctaaacacagtaggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggatacatccaccacaggcagggcctatcccaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagtaccccgcaggaacaaataacatggatgacc---------agcaatccacctatc---ccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggatataagacaagggccaaaagaaccttttagagattatgtagataggttctttaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacccagtcacaaagcaagagtgttagctgaggcaatg------------agccagacatca------------------------ggagcagcaataatgatgcaaaaa---ggcaat---tttaagggt---ccagga---agaaagattaagtgtttcaactgtggcaaggaaggacacctagctagaaattgcagggctcctagaaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaggactgcaca---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccagggaattttcttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccacccgca---gagagcttcgggttcgga---------------gaggagata---gccccctcc------------------------ccgaagcgagagccg------------------------aaggaacag---------------------gagtcatac---------ccc---tta---gcctccctcaaatcactctttggcagcgacccctagtcaccgtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,11fw,12rev","1fw,11fw","2rev,12rev",4,2,2
"DQ354120",">Ref.15_01B.TH.96.M169.DQ354120","Ref","15_01B","TH","96","M169","DQ354120",80,2013,0,23,1459,1488,"gcgagagcgtcagtattaactgg","ctctttggcaacgaccccttgtcacagtaa",1,30,0,23,1,30,1984,2013,1459,1488,1984,2013,"gcgagagcgtcagtattaactgggggaaaattagatgcatgggaaaaaattcggttacggccagggggaaagaaaaaatataggatgaaacatttagtatgggcaagcagagagttagaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaactaatagaacagttacagtcaactctcaagacaggatcagaagagcttaaatcattatttaatacaatagtaaccctctggtgcgtacaccaaaggatagaggtaagagacaccaaggaagctttagataaaatggaggaagtacaaaataagagccagcaaaagacacagcaggcagcagctagcacaggaagcagcagcaaagtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcagcctttatcacctagaactttgaatgcatgggtaaaagtagtagaagaaaaaggtttcaacccagaagtaatacccatgttctcagcactatcagagggagccaccccacaagatttaaatatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagataccatcaatgaggaagctgcagactgggatagggtacacccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgatatagcaggaactactagtacccttcaagaacaaataggatggatgacaaacaatccacctatcccagtgggagacatctataaaaggtggataatcctaggattaaataaaatagtaagaatgtatagccctgttggcattctggacataagacaagggccaaaagaacccttcagagactatgtagataggttctataaaactctcagagcggaacaagctacacaggaggtaaaaaactggatgacagaaaccttgctagtccaaaatgcgaatccagactgtaagtccattttaaaagcattaggaacaggagcttcattagaagaaatgatgacagcatgccagggagtgggaggacctagccataaggcaagggttttggctgaggcaatgagccacgcacagcatacaaatataatgatgcagagaggcaattttaagggccagaaaagaattaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggttgttggaaatgtggaaaggaaggacatcaaatgaaagattgcaatgagagtagacaggctaattttttagggaaaatttggccttcccacaagggaaggccggggaattttcctcagagcaggccagagccaacagccccaccagcagaaaactgggggatgggggaagagatgacctccctaccgaagcaggagcagaaagacaatcctcctccttcagtttccctcaaatcactctttggcaacgaccccttgtcacagtaa","------gcgagagcgtcagtattaactgggggaaaattagatgcatgggaaaaaattcggttacggccagggggaaagaaaaaatataggatgaaacatttagtatgggcaagcagagagttagaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaactaatagaacagttacagtcaactctcaagacaggatcagaagagcttaaatcattatttaatacaatagtaaccctctggtgcgtacaccaaaggatagaggtaagagacaccaaggaagctttagataaaatggaggaagtacaa------------aat---------------------aag---------------agccag------caaaag---------------------------------acacagcaggcagcagct---------------------------------agcacagga------------------------------------------------------------------------------------------agcagcagcaaa------------------gtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcagcctttatcacctagaactttgaatgcatgggtaaaagtagtagaa---gaaaaaggtttcaacccagaagtaatacccatgttctcagcactatcagagggagccaccccacaagatttaaatatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagataccatcaatgaggaagctgcagactgggatagggtacacccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgatatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------aacaatccacctatc---ccagtgggagacatctataaaaggtggataatcctaggattaaataaaatagtaagaatgtatagccctgttggcattctggacataagacaagggccaaaagaacccttcagagactatgtagataggttctataaaactctcagagcggaacaagctacacaggaggtaaaaaactggatgacagaaaccttgctagtc---caaaatgcgaatccagactgtaagtccattttaaaagcattaggaacaggagcttcattagaagaaatgatgacagcatgccagggagtgggaggacctagccataaggcaagggttttggctgaggcaatg------------agccacgcacag------------------------catacaaatataatgatgcagaga---ggcaat---tttaagggc---cagaaa---aga---attaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggttgttggaaatgtggaaaggaaggacatcaaatgaaagattgcaat---------gagagtagacaggctaattttttagggaaaatttgg---cct---tcccacaag---------gga---aggccggggaattttcctcagagc------------------------------aggcca------gagccaacagcc---------------------------------------------------ccaccagca---gaaaactgggggatgggg---------------gaagagatg---acctcccta------------------------ccgaagcaggagcag------------------------aaagacaatcct---------------------------------cctcct---tca---gtttccctcaaatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","3fw,4rev,10rev,11fw,12rev","3fw,11fw","4rev,10rev,12rev",5,2,3
"AF516184",">Ref.15_01B.TH.99.99TH_MU2079.AF516184","Ref","15_01B","TH","99","99TH_MU2079","AF516184",81,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgaccccttgttacaataa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttacggccaggaggaaagaaaaagtataaactaaaacatctagtatgggcaagcagagagttggaaagattcgcaattaaccctagccttttagaatcagcagaaggatgtcaacaaatactagaacagttacagtcaactctcaagacaggatcagaagaacttaaatcattatataatacagtagcaaccctctggtgcgtacaaaacaggatagaggtaaaagacaccaaggaagctttagataagatagaggaagtacaaaataagaaccagcaaaagacacagcaggcagcggctggcacaggaagcagcagcacagtcagccataattaccctatagtgcaaaatgcacaagggcaaatggtacatcagcctgtatcacctagaactttgaatgcatgggtgaaagtagtagaagaaaaaggttttaacccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatttaaatatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagaaaccatcaatgaggaagctgcaaaatgggatagagtacacccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaagtaggatggatgacaagcaatccagctatcccagtgggagacatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttctataaaactctcagagcagaacaagctacacaggaggtaaaaaattggatgacagaaacattgctagcccaaaatgcgaatccagactgtaagtccattttaaaagcattaggatcaggagcttcattagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaagcaagagttttggctgaggcaatgagccatgtacaacagacaaatgtaatgatgcagagaggcaattttaagggccagaaaagaattaagtgcttcaactgtggcaaagaaggacacctagccaggaattgcagggcccctagaaaaaagggttgttggaaatgtggggaggaaggacatcaaatgaaagactgcactgagagacaggctaattttttagggagactttggccttccaagggaaggccagggaattttcctcagagcagaccagagccatcagccccaccagcagagaactgggggatgggggaagagacaacctccttactgaagcaggagcagaaagacagggaacatactcctcctttagtttccctcaaatcactctttggcaacgaccccttgttacaataa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttacggccaggaggaaagaaaaagtataaactaaaacatctagtatgggcaagcagagagttggaaagattcgcaattaaccctagccttttagaatcagcagaaggatgtcaacaaatactagaacagttacagtcaactctcaagacaggatcagaagaacttaaatcattatataatacagtagcaaccctctggtgcgtacaaaacaggatagaggtaaaagacaccaaggaagctttagataagatagaggaagtacaa------------aat---------------------aag---------------aaccag------caaaag---------------------------------acacagcaggcagcggct---------------------------------ggcacagga------------------------------------------------------------------------------------------agcagcagcaca------------------gtcagccataattaccctatagtgcaaaatgcacaagggcaaatggtacatcagcctgtatcacctagaactttgaatgcatgggtgaaagtagtagaa---gaaaaaggttttaacccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatttaaatatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagaaaccatcaatgaggaagctgcaaaatgggatagagtacacccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaagtaggatggatgaca---------agcaatccagctatc---ccagtgggagacatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttctataaaactctcagagcagaacaagctacacaggaggtaaaaaattggatgacagaaacattgctagcc---caaaatgcgaatccagactgtaagtccattttaaaagcattaggatcaggagcttcattagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaagcaagagttttggctgaggcaatg------------agccatgtacaa------------------------cagacaaatgtaatgatgcagaga---ggcaat---tttaagggc---cagaaa---aga---attaagtgcttcaactgtggcaaagaaggacacctagccaggaattgcagggcccctagaaaaaagggttgttggaaatgtggggaggaaggacatcaaatgaaagactgcact---------gag---agacaggctaattttttagggagactttgg---cct---tccaag------------gga---aggccagggaattttcctcagagc------------------------------agacca------gagccatcagcc---------------------------------------------------ccaccagca---gagaactgggggatgggg---------------gaagagaca---acctcctta------------------------ctgaagcaggagcag------------------------aaagacagg---------------------gaacatact------cctcct---tta---gtttccctcaaatcactctttggcaacgaccccttgttacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,11fw,12rev","1fw,11fw","4rev,12rev",4,2,2
"AF530576",">Ref.15_01B.TH.99.99TH_R2399.AF530576","Ref","15_01B","TH","99","99TH_R2399","AF530576",82,2013,1,30,1462,1491,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgaccccttgtcacagtaa",1,30,1,30,1,30,1984,2013,1462,1491,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttacggccagggggaaagaaaaaatataggataaaacatttagtatgggcaagcagagagttagaaagattcgcagttaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagctacagccaatgctcaagacaggatcagaagaagttagatcattatttaacacaatagcaactctctggtgcgtacaccaaaggatagaggtaaaagacaccaaggaagctttagataaattagaggaagtacaaaagaagagccagcaaaagacacagcaggcagcagctggcacaggaagcagcagcaaagtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcagcctgtatcacctagaactttgaatgcatgggtgaaagtagtagaagaaaagggttttaatccagaagtaatacccatgttctcagcattatcagaaggagccaccccacaagatttaaacatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagaaaccatcaatgaggaagctgcagattgggatagggtacacccagtacatgcagggcctattccaccaggccaaatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgacaagcaatccacctatcccagtgggagacatctataaaaggtggataatcctgggactaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagggactatgtagacaggttctataaaactctcagagcggaacaagctacacaggaggtaaaaaactggatgacagaaaccttactagtccaaaatgcaaatccagattgtaaggccattttaagagcattaggacaaggagctacactagaagaaatgatgacagcatgccagggagtgggaggacctagccataaagcaagggttttggctgaggcaatgagccaagcacaacatgcaaatgtaatgatgcagagaggcaattttaagggccaaaaaagaattaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggttgttggaaatgtgggaaggaaggacatcaaatgaaagactgcattgagagacaggctaattttttagggaaaatttggccttccaacaagggaaggccgggaaattttcctcagagcagaccagagccaacagccccaccagcagagaactgggggatgggggaagagacaacctccttaccaaagcaggagcagaaagacaatcctcctcctttagtttccctcaaatcactctttggcaacgaccccttgtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttacggccagggggaaagaaaaaatataggataaaacatttagtatgggcaagcagagagttagaaagattcgcagttaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagctacagccaatgctcaagacaggatcagaagaagttagatcattatttaacacaatagcaactctctggtgcgtacaccaaaggatagaggtaaaagacaccaaggaagctttagataaattagaggaagtacaa------------aag---------------------aag---------------agccag------caaaag---------------------------------acacagcaggcagcagct---------------------------------ggcacagga------------------------------------------------------------------------------------------agcagcagcaaa------------------gtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcagcctgtatcacctagaactttgaatgcatgggtgaaagtagtagaa---gaaaagggttttaatccagaagtaatacccatgttctcagcattatcagaaggagccaccccacaagatttaaacatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagaaaccatcaatgaggaagctgcagattgggatagggtacacccagtacatgcagggcctattccaccaggccaaatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------agcaatccacctatc---ccagtgggagacatctataaaaggtggataatcctgggactaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagggactatgtagacaggttctataaaactctcagagcggaacaagctacacaggaggtaaaaaactggatgacagaaaccttactagtc---caaaatgcaaatccagattgtaaggccattttaagagcattaggacaaggagctacactagaagaaatgatgacagcatgccagggagtgggaggacctagccataaagcaagggttttggctgaggcaatg------------agccaagcacaa------------------------catgcaaatgtaatgatgcagaga---ggcaat---tttaagggc---caaaaa---aga---attaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggttgttggaaatgtgggaaggaaggacatcaaatgaaagactgcatt---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------gga---aggccgggaaattttcctcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagaactgggggatgggg---------------gaagagaca---acctcctta------------------------ccaaagcaggagcag------------------------aaagacaatcct---------------------------------cctcct---tta---gtttccctcaaatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,3fw,4rev,7rev,10rev,11fw,12rev","1fw,3fw,11fw","4rev,7rev,10rev,12rev",7,3,4
"AY945736",">Ref.16_A2D.KE.91.KNH1271.AY945736","Ref","16_A2D","KE","91","KNH1271","AY945736",83,2013,0,23,1447,1476,"gcgagagcgtcaatattaagcgg","ctctttggcaacgacccgttgtcacagtaa",1,30,0,23,1,30,1984,2013,1447,1476,1984,2013,"gcgagagcgtcaatattaagcgggggaaaattagatgcatgggaaaaaattcggttacggccaggaggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctagaacgatttgcacttaatcctggccttttagaaacatcagaaggctgtaaacagttaataggacagctacaaccagctgttaagacaggatcagaagaactcaaatcattattcaatacattagcaaccctctattgtgtacatcaaaagatagaggtaaaagacaccaaggaagctctagataaactagaggaagaacaaaacaaacacaagcagcagacacagcatgcagcagctgacacaggaagcagcagcagtcagaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaggcaatatcacctaggactttgaatgcatgggtcaaggtagtagaagaaaaggctttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagacttaaatatgatgctaaacatagtggggggacatcaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagagcacatccagtacatgcagggcctatcccaccaggccagataagagaaccaaggggaagcgacatagcaggaactactagtacccttcaggaacaaataggatggatgaccagtaacccacctatcccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtaaggatgtatagccctaccagcattttggacataagacaaggaccaaaagaaccctttagagactatgtagataggttctttaaaactctcagagctgagcaagctacacaggatgtaaaaaattggatgacagacaccttgttagtccaaaatgcaaatccagattgtaaaaccatcttgagagcattaggaccaggggcttcattagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaggcaagggttttggctgaagcaatgagccaagcgcaaaatacaaacttaaacataatgatgcaaagaggcaactttaagggtcaaaaaagaatcaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggctgctggaaatgtgggaaggaaggacatcaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggcctcccaacaacaggaggccaggaaatttccctcagagcagaacagagccaacagccccgccagcagagagctttggaatgggggaagagataaccccctcgccgaagcaggaaccacacaatcctgcaatttccctcaaatcactctttggcaacgacccgttgtcacagtaa","------gcgagagcgtcaatattaagcgggggaaaattagatgcatgggaaaaaattcggttacggccaggaggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctagaacgatttgcacttaatcctggccttttagaaacatcagaaggctgtaaacagttaataggacagctacaaccagctgttaagacaggatcagaagaactcaaatcattattcaatacattagcaaccctctattgtgtacatcaaaagatagaggtaaaagacaccaaggaagctctagataaactagaggaagaacaa------------aac---------------------aaa---------------cacaag------cagcag---------------------------------acacagcatgcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------agcagcagc------------------------agtcagaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaggcaatatcacctaggactttgaatgcatgggtcaaggtagtagaa---gaaaaggctttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagacttaaatatgatgctaaacatagtggggggacatcaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagagcacatccagtacatgcagggcctatcccaccaggccagataagagaaccaaggggaagcgacatagcaggaactactagtacccttcaggaacaaataggatggatgacc---------agtaacccacctatc---ccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtaaggatgtatagccctaccagcattttggacataagacaaggaccaaaagaaccctttagagactatgtagataggttctttaaaactctcagagctgagcaagctacacaggatgtaaaaaattggatgacagacaccttgttagtc---caaaatgcaaatccagattgtaaaaccatcttgagagcattaggaccaggggcttcattagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaggcaagggttttggctgaagcaatg------------agccaagcgcaaaataca------------------aacttaaacataatgatgcaaaga---ggcaac---tttaagggt---caaaaa---aga---atcaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggctgctggaaatgtgggaaggaaggacatcaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---cccaacaac---------agg---aggccaggaaatttccctcagagc------------------------------agaaca------gagccaacagcc---------------------------------------------------ccgccagca---gagagctttggaatgggg---------------gaagagata---accccctcg------------------------ccgaagcaggaacca---------------------------------------------------------cacaat---------cct---gca---atttccctcaaatcactctttggcaacgacccgttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","4rev,7rev,10rev,11fw,12rev","11fw","4rev,7rev,10rev,12rev",5,1,4
"AF286239",">Ref.16_A2D.KR.97.97KR004.AF286239","Ref","16_A2D","KR","97","97KR004","AF286239",84,2013,1,30,1470,1499,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgaccccttgttacagtaa",1,30,1,30,1,30,1984,2013,1470,1499,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttacggccaggaggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctagaacgctttgcaattaatcctggccttttagagacatcagaaggctgtaaacaaataataggacagctagaaccatctattaagacaggatcagaagaaattaagtcattgtttaatgcagtagtaaccctctattgtgtacatcaaagaatagaggtaagagacaccaaggaagctctagataaattagaggaagaacaaaacaaacacaagcagaagacacagcctgcagcagctgacacaggaagcagcggcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatgacatatcagaacttatcacctaggactttgaatgcatgggtcaaagtagtagaagaaaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagacttaaataccatgctaaacacagtggggggacatcaggctgctatgcaaatgttaaaagataccatcaatgaggaagcggcagaatgggacaggctgcatccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataggatggatgaccagcaacccacctgtcccagtgggagagatctataaaagatggataatcttgggattaaataaaatagtaagaatgtatagccctgtcagcattctggacataagacaagggccaaaagaaccctttagagactatgtagataggttctttaaaactctcagagctgagcaagctacacaggaagtaaaaaattggatgacagaaaccttgctggtccaaaatgcgaacccagattgtaaatccatcttgagagccttaggaccaggggcttcattagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagggttttggctgaagcaatgagccaagtacaaaatacaaattcaaacataatgatgatgcagaaaggcaattttagggggcaaaaaaaattaagtgtttcaactgtggcaaggaaggacacctagccagaaattgcagggcccctaggaaaaagggctgctggaaatgtgggaaggaaggacatcaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggccttcccacagcgggaggccagggaattttcctcagagcagaacagaaccaacagccccaccagcagaggactttggaatgggggaggagacaacccccttgcagaagcaggagctgaaaaacagggaacaacacactcctgcaatttccctcaaatcactctttggcaacgaccccttgttacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttacggccaggaggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctagaacgctttgcaattaatcctggccttttagagacatcagaaggctgtaaacaaataataggacagctagaaccatctattaagacaggatcagaagaaattaagtcattgtttaatgcagtagtaaccctctattgtgtacatcaaagaatagaggtaagagacaccaaggaagctctagataaattagaggaagaacaa------------aac---------------------aaa---------------cacaag------cagaag---------------------------------acacagcctgcagcagct---------------------------------gacacagga---------------------------------------------------------------------------------------------agcagc---------------------ggcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatgacatatcagaacttatcacctaggactttgaatgcatgggtcaaagtagtagaa---gaaaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagacttaaataccatgctaaacacagtggggggacatcaggctgctatgcaaatgttaaaagataccatcaatgaggaagcggcagaatgggacaggctgcatccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataggatggatgacc---------agcaacccacctgtc---ccagtgggagagatctataaaagatggataatcttgggattaaataaaatagtaagaatgtatagccctgtcagcattctggacataagacaagggccaaaagaaccctttagagactatgtagataggttctttaaaactctcagagctgagcaagctacacaggaagtaaaaaattggatgacagaaaccttgctggtc---caaaatgcgaacccagattgtaaatccatcttgagagccttaggaccaggggcttcattagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagggttttggctgaagcaatg------------agccaagtacaaaataca------------aat---tcaaacataatgatgatgcagaaa---ggcaat---tttaggggg---caaaaa---aa----attaagtgtttcaactgtggcaaggaaggacacctagccagaaattgcagggcccctaggaaaaagggctgctggaaatgtgggaaggaaggacatcaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tcccacagc---------ggg---aggccagggaattttcctcagagc------------------------------agaaca------gaaccaacagcc---------------------------------------------------ccaccagca---gaggactttggaatgggg---------------gaggagaca---acccccttg------------------------cagaagcaggagctg------------------------aaaaacagg---------------------gaacaacac------actcct---gca---atttccctcaaatcactctttggcaacgaccccttgttacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,7rev,10rev,11fw,12rev","1fw,11fw","7rev,10rev,12rev",5,2,3
"EU581825",">Ref.17_BF.AR.02.AR02_ARG1139.EU581825","Ref","17_BF","AR","02","AR02_ARG1139","EU581825",85,2013,0,23,1447,1476,"gcgagagcgtcggtattaagcgg","ctctttggcaacgacccctagtcacaataa",1,30,0,23,1,30,1984,2013,1447,1476,1984,2013,"gcgagagcgtcggtattaagcgggggagaattagataggtgggaaaaaattcggttaaggccagggggaaagaaaaagtatagattaaaacatatagtatgggcaagcagggagctagaacgattcgcagtcaatcctggcctattagaaacatcagaaggctgtcggaaaataataggacagttacaaccatcccttcagacaggatcagaagaacttacatcattatttaatacagtagtagtcctctattttgtacataaaaaggtagaggtaaaagacaccaaggatgctttagataaactagaggaagaacaaaacaaaagtcagcaaaagacacagcaagcggcagctgacaaaggggtcagtcaaaattaccctatagtacagaaccttcagggacaaatgatgcaccagcctttaacacctagaactttaaatgcatgggtaaaggtggtagaagagaaaacttttagcccagaagtaatacccatgttttcagcattagcagagggggccactccacaagatttaaacaccatgctaaactcagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcaggacctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgacaagtaacccaccggtcccagtgggagaaatttataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagacaggttctttaaaaccctaagagctgaacaagctacacaggaagtaaagggttggatgacagacaccttgttggtccaaaatgcgaacccagattgtaaaaccattctaaaagcattgggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaagcaatgagccaagtaacaagtacaaatgtaatgatgcagaaaagtaactttaagggccaaagaagaattattaaatgtttcaattgtggcagagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagagggacaccaaatgaaagactgcactgaaagacaggctaattttttagggagaatttggccttccaacaaagggaggccaggaaatttccttcagaacaggccagagccaacagccccaccagcagagagcttcggatttggagaacagacaaccccgaagcaggagcagaaagacgagggtctgtaccctcccttagcctccctcaaatcactctttggcaacgacccctagtcacaataa","------gcgagagcgtcggtattaagcgggggagaattagataggtgggaaaaaattcggttaaggccagggggaaagaaaaagtatagattaaaacatatagtatgggcaagcagggagctagaacgattcgcagtcaatcctggcctattagaaacatcagaaggctgtcggaaaataataggacagttacaaccatcccttcagacaggatcagaagaacttacatcattatttaatacagtagtagtcctctattttgtacataaaaaggtagaggtaaaagacaccaaggatgctttagataaactagaggaagaacaa------------aac---------------------aaa---------------agtcag------caaaag---------------------------------acacagcaagcggcagct---------------------------------gacaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaaccttcagggacaaatgatgcaccagcctttaacacctagaactttaaatgcatgggtaaaggtggtagaa---gagaaaacttttagcccagaagtaatacccatgttttcagcattagcagagggggccactccacaagatttaaacaccatgctaaactcagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcaggacctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgaca---------agtaacccaccggtc---ccagtgggagaaatttataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagacaggttctttaaaaccctaagagctgaacaagctacacaggaagtaaagggttggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaaaaccattctaaaagcattgggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaagcaatg------------agccaagtaaca------------------------agtacaaatgtaatgatgcagaaa---agtaac---tttaagggc---caaaga---agaattattaaatgtttcaattgtggcagagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagagggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggagaatttgg---cct---tccaacaaa---------ggg---aggccaggaaatttccttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcggatttgga---------------gaacagaca---acc------------------------------ccgaagcaggagcag------------------------aaagacgag---------------------ggtctgtac------cctccc---tta---gcctccctcaaatcactctttggcaacgacccctagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","3fw,4rev,7rev,10rev,11fw,12rev","3fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"EU581827",">Ref.17_BF.BO.02.BO02_BOL119.EU581827","Ref","17_BF","BO","02","BO02_BOL119","EU581827",86,2013,0,23,1465,1494,"gcgagagcgtcagtattaagcgg","ctctttggcaacgacccctagtcacaataa",1,30,0,23,1,30,1984,2013,1465,1494,1984,2013,"gcgagagcgtcagtattaagcgggggagaattagataggtgggaaaaaattcggttaaggccagggggaaagaaaaaatatagattaaaacatatagtatgggcaagcagggaactagaacgattcgcagttaatcctggcctattagaaacaacagaaggctgtcgaaaaataatagcacagctacaaccatcccttcagacaggatcagaagagcttagatcattatataatacaatagtagtcctctattatgtacatcaaaaagtagatgtaaaggacaccaaggaagctttagagaagctagaggaagaacaaaacaaaagtcagcaaagggtacagcaaaagacacagccagcggcagctgacaaaggggtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtataccagactttgtcacctagaactttaaatgcatgggtaaaggtagtagaagagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagattacatccagtgcaggcaggacctatcccaccaggccagataagggaacctaggggaagtgatatagctggaactactagtacccctcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagagatctataaaagatggatcatcctaggattgaataaaatagtaagaatgtacagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaagctacacaggaagtaaagggttggatgacagaaacattgttggtccaaaatgcgaacccagattgtaaaaccattttaaaagcattgggaacaggggctacactagaagaaatgatgacagcatgtcagggagtaggaggacctggccataaggcaagggttttggctgaggcaatgagccaagtaacaggtacaactgtaatgatgcaaaaaggtaactttaagggccaaagaaaaagtgttaaatgtttcaattgtggcaaagaagggcacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagactgcactgaaagacaggctaattttttagggagaatttggccttccaacaaagggaggccagggaatttccttcagaacagaccagagccaacagccccgccagcagagagcttcgggttcggggagcagataaccccccatccgaagcaggagcagaaggacgagggactgtaccctcccttagcttccctcaaatcactctttggcaacgacccctagtcacaataa","------gcgagagcgtcagtattaagcgggggagaattagataggtgggaaaaaattcggttaaggccagggggaaagaaaaaatatagattaaaacatatagtatgggcaagcagggaactagaacgattcgcagttaatcctggcctattagaaacaacagaaggctgtcgaaaaataatagcacagctacaaccatcccttcagacaggatcagaagagcttagatcattatataatacaatagtagtcctctattatgtacatcaaaaagtagatgtaaaggacaccaaggaagctttagagaagctagaggaagaacaa------------aac---------------------aaa---------------agtcag------caaagggtacagcaaaag---------------------acacagccagcggcagct---------------------------------gacaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtataccagactttgtcacctagaactttaaatgcatgggtaaaggtagtagaa---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggagccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagattacatccagtgcaggcaggacctatcccaccaggccagataagggaacctaggggaagtgatatagctggaactactagtacccctcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagagatctataaaagatggatcatcctaggattgaataaaatagtaagaatgtacagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaagctacacaggaagtaaagggttggatgacagaaacattgttggtc---caaaatgcgaacccagattgtaaaaccattttaaaagcattgggaacaggggctacactagaagaaatgatgacagcatgtcagggagtaggaggacctggccataaggcaagggttttggctgaggcaatg------------agccaagtaaca------------------------ggtacaactgtaatgatgcaaaaa---ggtaac---tttaagggc---caaaga---aaaagtgttaaatgtttcaattgtggcaaagaagggcacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggagaatttgg---cct---tccaacaaa---------ggg---aggccagggaatttccttcagaac------------------------------agacca------gagccaacagcc---------------------------------------------------ccgccagca---gagagcttcgggttcggg---------------gagcagata---accccccat------------------------ccgaagcaggagcag------------------------aaggacgag---------------------ggactgtac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccctagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","4rev,10rev,11fw,12rev","11fw","4rev,10rev,12rev",4,1,3
"EU581828",">Ref.17_BF.PE.02.PE02_PCR0155.EU581828","Ref","17_BF","PE","02","PE02_PCR0155","EU581828",87,2013,0,23,1453,1482,"gcgagagcgtcggtattaagcgg","ctctttggcaacgacccctagtcacaataa",1,30,0,23,1,30,1984,2013,1453,1482,1984,2013,"gcgagagcgtcggtattaagcgggggagaattagatagatgggaaaaaattcggttaaggccagggggaaagaaaaaatacaaattaaaacatatagtatgggcaagcagggagctagaacgattcgcagtcaatcctggcctattagaaacatcagaaggctgtcgaaaaataatagcacagctacaaccatcccttcagacaggatcagaagagcttagatcattatataatacagtagcagtcctctattgtgtacatcaaaaggtagaggtaaaggacaccaaggaagctttagagaagctagaggaagaacaaaasaaatgtcagcaaaaggcacagcaagcggcagctaacaaaggggttagtcaaaattaccctatagtacagaatcttcagggacaaatggtgcaccagtctttatcacctagaactttaaatgcatgggtaaaggtgatagaagagaagggttttaacccagaagtaatacccatgtttacagcattgtcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagattacatccagtgcaagcaggacctatcccaccaggccagatgagagaacctaggggaagtgatatagcgggaactactagtaaccttcaggaacaaatacaatggatgactagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaagctacacaggaagtaaagggttggatgacagagaccttgttggtccaaaatgcgaacccagattgtaaaaccatcttaagagcattgggatcaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaggcaatgagccaagtaacaggtacaactgtaatgatgcagaaaagtaactttaagggccaaagaagaattgttaaatgtttcaattgtggccgagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaagtttggccttccaacagggggaggcccggaaatttccttcagaacaggacagagccaacagccccgccattagagagtttcgggttcggggagaagataacccccgatccgaagcaggagcagaaagacgagggacagtaccctcccttagcttccctcaaatcactctttggcaacgacccctagtcacaataa","------gcgagagcgtcggtattaagcgggggagaattagatagatgggaaaaaattcggttaaggccagggggaaagaaaaaatacaaattaaaacatatagtatgggcaagcagggagctagaacgattcgcagtcaatcctggcctattagaaacatcagaaggctgtcgaaaaataatagcacagctacaaccatcccttcagacaggatcagaagagcttagatcattatataatacagtagcagtcctctattgtgtacatcaaaaggtagaggtaaaggacaccaaggaagctttagagaagctagaggaagaacaa------------aas---------------------aaa---------------tgtcag------caaaag---------------------------------gcacagcaagcggcagct---------------------------------aacaaaggg------------------------------------------------------------------------------------------------------------------------gttagtcaaaattaccctatagtacagaatcttcagggacaaatggtgcaccagtctttatcacctagaactttaaatgcatgggtaaaggtgatagaa---gagaagggttttaacccagaagtaatacccatgtttacagcattgtcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagattacatccagtgcaagcaggacctatcccaccaggccagatgagagaacctaggggaagtgatatagcgggaactactagtaaccttcaggaacaaatacaatggatgact---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaagctacacaggaagtaaagggttggatgacagagaccttgttggtc---caaaatgcgaacccagattgtaaaaccatcttaagagcattgggatcaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaggcaatg------------agccaagtaaca------------------------ggtacaactgtaatgatgcagaaa---agtaac---tttaagggc---caaaga---agaattgttaaatgtttcaattgtggccgagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaagtttgg---cct---tccaacagg---------ggg---aggcccggaaatttccttcagaac------------------------------aggaca------gagccaacagcc---------------------------------------------------ccgccatta---gagagtttcgggttcggg---------------gagaagata---acccccgat------------------------ccgaagcaggagcag------------------------aaagacgag---------------------ggacagtac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccctagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","4rev,7rev,10rev,11fw,12rev","11fw","4rev,7rev,10rev,12rev",5,1,4
"AF377959",">Ref.18_cpx.CM.97.CM53379.AF377959","Ref","18_cpx","CM","97","CM53379","AF377959",88,2013,0,23,1457,1486,"gcgagagcgtcagtattaagcgg","ctctttggcagcgacccctagtcacagtaa",1,30,0,23,1,30,1984,2013,1457,1486,1984,2013,"gcgagagcgtcagtattaagcgggggaaaattggatgcatgggagaaagttcggttaaggccagggggaaggaaaaaatatagattaaaacatatagtatgggcaagcagggagctggaaagatttgcaatcaaccctggccttttagaacaaacagaggggtgtcaacaaataatgaaacaattacaaccagctctcaacacaggatcagaagaacttaggtcattatataatacagtagcagttctctattgtgtacatcaaaggatagatgtaaaagacaccaaggaagccttagataaaatagaggaaatgcaaaagaacaagcaaaagacacagcaggcggcagctgacacaggaagcagcagcaaggtcagccaaaattaccccatagtgcaaaatgcacaagggcaaatgatacatcagagcatgtcacctaggactttgaatgcatgggtaaaagcaatagaggaaaaggcttttagcccagaagtaatacccatgttcacagcattatcagagggagctaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggacaggatacatccagtacaagcagggccttttccaccaggacagctgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgacaagcaaccctcctattccagtgggagaaatctataagagatggataatactgggattaaataaaatagtaagaatgtatagccctgttagcattttggacatacgacaagggccaaaagaaccctttagagactatgtggacaggttctttaaaactctcagagctgagcaggctacacaggaagtaaaaggttggatgacagaaaccttgctggtccagaatgctaatccagattgtaagtccattttaagagcattaggagcaggggctacactagaagaaatgatgacagcatgtcagggagtaggaggacccggccataaagccagggttttggctgaggcaatgagtcaagtacaacatgccaacataatgatgcagagaggcaatttcaggggccagaaaagaattaagtgttttaattgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggaaggacatcaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggccttccaacaaggggaggccagggaactttctccagaacaaaccagagccaacagccccaccagcggagagcttcgggttcggagaggagatagccccctcccccgaaacaggagccgaaggaaaaggagctatatccttcggcttccctcaaatcactctttggcagcgacccctagtcacagtaa","------gcgagagcgtcagtattaagcgggggaaaattggatgcatgggagaaagttcggttaaggccagggggaaggaaaaaatatagattaaaacatatagtatgggcaagcagggagctggaaagatttgcaatcaaccctggccttttagaacaaacagaggggtgtcaacaaataatgaaacaattacaaccagctctcaacacaggatcagaagaacttaggtcattatataatacagtagcagttctctattgtgtacatcaaaggatagatgtaaaagacaccaaggaagccttagataaaatagaggaaatgcaa------------------------------------aag---------------aacaag------caaaag---------------------------------acacagcaggcggcagct---------------------------------gacacagga------------------------------------------------------------------------------------------agcagcagcaag------------------gtcagccaaaattaccccatagtgcaaaatgcacaagggcaaatgatacatcagagcatgtcacctaggactttgaatgcatgggtaaaagcaatagag---gaaaaggcttttagcccagaagtaatacccatgttcacagcattatcagagggagctaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggacaggatacatccagtacaagcagggccttttccaccaggacagctgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------agcaaccctcctatt---ccagtgggagaaatctataagagatggataatactgggattaaataaaatagtaagaatgtatagccctgttagcattttggacatacgacaagggccaaaagaaccctttagagactatgtggacaggttctttaaaactctcagagctgagcaggctacacaggaagtaaaaggttggatgacagaaaccttgctggtc---cagaatgctaatccagattgtaagtccattttaagagcattaggagcaggggctacactagaagaaatgatgacagcatgtcagggagtaggaggacccggccataaagccagggttttggctgaggcaatg------------agtcaagtacaa------------------------catgccaacataatgatgcagaga---ggcaat---ttcaggggc---cagaaa---aga---attaagtgttttaattgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggaaggacatcaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccagggaactttctccagaac------------------------------aaacca------gagccaacagcc---------------------------------------------------ccaccagcg---gagagcttcgggttcgga---------------gaggagata---gccccctcc-----------------------cccgaaacaggagccg------------------------aaggaaaag---------------------gagctatat---------cct---tcg---gcttccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","4rev,11fw,12rev","11fw","4rev,12rev",3,1,2
"AY586541",">Ref.18_cpx.CU.99.CU14.AY586541","Ref","18_cpx","CU","99","CU14","AY586541",89,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccctcgtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaaaaaaaaatatagactgaaacatatagtatgggcaagcagggagctggacagatttgcaatcaaccccggccttttagaaacagcagaaggatgtcagcaaataatagaacagttacaatcaactgtcaaaacaggatcagaagaacttaagtcattatataatacaatagcaactctctattgtgtacatcaaaggatagatgtaaaagacaccaaggaagccttagataaaatagaggagctacaaaataagagcaagcaaaagaaacagcagacagcagctgccgcaggaggcagcagccaggtcagccaaaattaccccatagtgcaaaatgcacaagggcaaatgatacatcagtccatgtcacctagaactttgaatgcatgggtaaaagcaatagaagaaaaggctttcagcccagaagtaatacccatgttctcagcattatcagagggagctaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggctacatccagtacaagcagggcctattccaccaggccagataagagagccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataaggtggatgacaagcaacccacctatcccagtgggagacatctataagagatggataatactgggcttaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaggaaccctttagagactatgtggacaggttctttaaaactctcagagctgagcaggctacacaggaggtaaaaaattggatgacagaaaccttgctggtccaaaatgcgaatccagattgtaagaacattttaagagcattaggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacccggtcataaagccagggttttggctgaggcaatgagtcaagtacaacacagaagcataatgatgcagagaggaaatttcaagggccagaaaagaattaagtgtttcaattgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggaaggacatcaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccaacaagggaaggccagggaattttctccagaaaagaccagagccaacagccccaccagcagagagcctggggttcggagaggagatagccccctccccgaagcaagagccgaaggaagaggagaaatatcccttctcttccctcaaatcactctttggcagcgacccctcgtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaaaaaaaaatatagactgaaacatatagtatgggcaagcagggagctggacagatttgcaatcaaccccggccttttagaaacagcagaaggatgtcagcaaataatagaacagttacaatcaactgtcaaaacaggatcagaagaacttaagtcattatataatacaatagcaactctctattgtgtacatcaaaggatagatgtaaaagacaccaaggaagccttagataaaatagaggagctacaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------aaacagcagacagcagct---------------------------------gccgcagga------------------------------------------------------------------------------------------ggcagcagccag------------------gtcagccaaaattaccccatagtgcaaaatgcacaagggcaaatgatacatcagtccatgtcacctagaactttgaatgcatgggtaaaagcaatagaa---gaaaaggctttcagcccagaagtaatacccatgttctcagcattatcagagggagctaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggctacatccagtacaagcagggcctattccaccaggccagataagagagccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataaggtggatgaca---------agcaacccacctatc---ccagtgggagacatctataagagatggataatactgggcttaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaggaaccctttagagactatgtggacaggttctttaaaactctcagagctgagcaggctacacaggaggtaaaaaattggatgacagaaaccttgctggtc---caaaatgcgaatccagattgtaagaacattttaagagcattaggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacccggtcataaagccagggttttggctgaggcaatg------------agtcaagtacaa------------------------cacagaagcataatgatgcagaga---ggaaat---ttcaagggc---cagaaa---aga---attaagtgtttcaattgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggaaggacatcaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------gga---aggccagggaattttctccagaaa------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcctggggttcgga---------------gaggagata---gccccctcc------------------------ccgaagcaagagccg------------------------aaggaagag---------------------gagaaatat---------ccc---ttc---tcttccctcaaatcactctttggcagcgacccctcgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,9fw,10rev,11fw,12rev","1fw,9fw,11fw","2rev,4rev,7rev,10rev,12rev",8,3,5
"AY894993",">Ref.18_cpx.CU.99.CU68.AY894993","Ref","18_cpx","CU","99","CU68","AY894993",90,2013,1,30,1470,1497,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgaccccttgtcaataa",1,30,1,30,1,30,1984,2013,1470,1497,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaggaaaaaatatagactaaaacatttggtatgggcaagcagagagctggaaagatttgcacttaaccctggccttttagaaacagcggaaggatgtcaacaaataatagatcagatacaaccagctgtcaaaacaggatcagaagaacttaagtcattatataatacagtggcaactctctattgtgtacatcagaggatagatgtaaaagacaccaaggaagccttagataaaatagaggaactacaaaataagagcaagcaaagaacacagcaggcagcagctgccacaggaagcagcagtcaagtcagccaaaattaccccatagtgcaaaatgcacaagggcaaatgatacatcagtccatatcacctaggactttgaatgcatgggtaaaagcaatagaagaaaaggcttttagtccagaagtaatacccatgttctcagcattatcagaaggagctaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggatacatccaccacaggcagggcctgttgcaccaggccagataagagatccaaggggaagtgacatagcaggaactactagtacccttcaagaacagataaggtggatgacaagcaacccacctatcccagtgggagacatctataagagatggataatactgggcttaaataagatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaaccctttagagactatgtggataggttctttaaaactctcagagctgagcaggctacacaggaagtaaaaaattggatgacagaaaccttgctagtccaaaatgcgaatccagattgtaagaacattttaagagcattaggaccagcggctacactagaagaaatgatgacagcatgtcagggagtgggaggacccggccataaagccagggttttggctgaggcaatgagtcaagtacaacaggccaatgtaatgatgcagagaggaaatttcaagggcccgagaaaaattaagtgtttcaattgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggaaggaaggacatcaaatgaaagactgcaccactgagagacaggctaattttttagggaaaatttggccttccaacaaggggaggccagggaattttctccagaagagaccagagccaacagccccaccagcggagagcttggggttcggaaagtacatagccccctccccgaagcaagagccgcaaggaaaaaggagaaatatcctttcccttccctcaaatcactctttggcagcgaccccttgtcaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaggaaaaaatatagactaaaacatttggtatgggcaagcagagagctggaaagatttgcacttaaccctggccttttagaaacagcggaaggatgtcaacaaataatagatcagatacaaccagctgtcaaaacaggatcagaagaacttaagtcattatataatacagtggcaactctctattgtgtacatcagaggatagatgtaaaagacaccaaggaagccttagataaaatagaggaactacaa------------aat---------------------aag---------------agcaag------caaaga---------------------------------acacagcaggcagcagct---------------------------------gccacagga------------------------------------------------------------------------------------------agcagcagtcaa------------------gtcagccaaaattaccccatagtgcaaaatgcacaagggcaaatgatacatcagtccatatcacctaggactttgaatgcatgggtaaaagcaatagaa---gaaaaggcttttagtccagaagtaatacccatgttctcagcattatcagaaggagctaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggatacatccaccacaggcagggcctgttgcaccaggccagataagagatccaaggggaagtgacatagcaggaactactagtacccttcaagaacagataaggtggatgaca---------agcaacccacctatc---ccagtgggagacatctataagagatggataatactgggcttaaataagatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaaccctttagagactatgtggataggttctttaaaactctcagagctgagcaggctacacaggaagtaaaaaattggatgacagaaaccttgctagtc---caaaatgcgaatccagattgtaagaacattttaagagcattaggaccagcggctacactagaagaaatgatgacagcatgtcagggagtgggaggacccggccataaagccagggttttggctgaggcaatg------------agtcaagtacaa------------------------caggccaatgtaatgatgcagaga---ggaaat---ttcaagggc---ccgaga---aaa---attaagtgtttcaattgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggaaggaaggacatcaaatgaaagactgcaccact------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccagggaattttctccagaag------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagcg---gagagcttggggttcgga---------------aagtacata---gccccctcc------------------------ccgaagcaagagccg------------------------caaggaaaa------------------ag-gagaaatat---------cct---ttc---ccttccctcaaatcactctttggcagcgaccccttgt--caataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"AY588971",">Ref.19_cpx.CU.99.CU29.AY588971","Ref","19_cpx","CU","99","CU29","AY588971",91,2013,1,30,1474,1503,"atgggtgcgagagcgtcaatattaaggggg","ctctttggcaacgaccccttgtcacaataa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcaatattaagggggggaaaattagatcggtgggaaaaaattcggttacggccagggggaaagaaacaatatagactgaaacatttagtatgggcaagcagggaactggaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcagcaaataatagaacagttacaatcaactctcaagacaggatcagaagaacttaaatcattatataatgcaatagcagtcctctggtgcgtacatcagaggatagatgtaaaagacaccaaggaagctttagataaaatagaggaagcacagaataagagcaagcaaaagaaacagcaggcaacagctgacacaggaaacagcagccaggtcagccagaccagccatatagtgcaaaacctgcaggggcaaatggtacaccaggccctgtcacctagaactttgaatgcatgggtaaaagtaatagaagagaaggctttcaacccagaagtaatacccatgttttcagcattgtcagaaggagccaccccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggataggttacatccagtgcatgcaggacctgttgcaccaggccagatgagagagccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataaattggatgacagccaatccacccatcccagtaggagaaatatataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaaggaccaaaggaaccctttagagattatgtagatcggttctataaaactctaagagctgagcaagcttcacaggatgtaaaaaattggatgacagaaaccttgttggtccaaaatgcaaacccagattgtaaaactatcttaaaagcattgggaccaggggctacattagaggaaatgatgacagcatgtcagggagtgggaggacccagtcataaagcaagagttttggctgaggcaatgagccaagcaacaagtacaagtgctgccataatgatgcagagaggtaattttaagggcccaagaaaaattgttaagtgttttaattgtggcaaagaagggcacatagcaaaaaattgcagagcccctagaaaaaagggctgttggaaatgtggaaaggaagggcaccaaatgaaagaatgcactgaaaggcaggctaattttttagggaaaatttggccttcccacaaggggaggccaggaaactttcttcagagcagaccagagccaacagccccaccagcagagagcttcgggtttggggaggagatgaccccctctcagaaacagaagcagacgaaagaggaactgtatcccttaacttccctcagatcactctttggcaacgaccccttgtcacaataa","atgggtgcgagagcgtcaatattaagggggggaaaattagatcggtgggaaaaaattcggttacggccagggggaaagaaacaatatagactgaaacatttagtatgggcaagcagggaactggaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcagcaaataatagaacagttacaatcaactctcaagacaggatcagaagaacttaaatcattatataatgcaatagcagtcctctggtgcgtacatcagaggatagatgtaaaagacaccaaggaagctttagataaaatagaggaagcacag------------aat---------------------aag---------------agcaag------caaaag---------------------------------aaacagcaggcaacagct---------------------------------gacacagga------------------------------------------------------------------------------------------aacagcagccag------------------gtcagccagaccagccatatagtgcaaaacctgcaggggcaaatggtacaccaggccctgtcacctagaactttgaatgcatgggtaaaagtaatagaa---gagaaggctttcaacccagaagtaatacccatgttttcagcattgtcagaaggagccaccccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggataggttacatccagtgcatgcaggacctgttgcaccaggccagatgagagagccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataaattggatgaca---------gccaatccacccatc---ccagtaggagaaatatataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaaggaccaaaggaaccctttagagattatgtagatcggttctataaaactctaagagctgagcaagcttcacaggatgtaaaaaattggatgacagaaaccttgttggtc---caaaatgcaaacccagattgtaaaactatcttaaaagcattgggaccaggggctacattagaggaaatgatgacagcatgtcagggagtgggaggacccagtcataaagcaagagttttggctgaggcaatg------------agccaagcaacaagtaca------------------agtgctgccataatgatgcagaga---ggtaat---tttaagggc---ccaaga---aaaattgttaagtgttttaattgtggcaaagaagggcacatagcaaaaaattgcagagcccctagaaaaaagggctgttggaaatgtggaaaggaagggcaccaaatgaaagaatgcact---------gaa---aggcaggctaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggccaggaaactttcttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggtttggg---------------gaggagatg---accccctct------------------------cagaaacagaagcag------------------------acgaaagag---------------------gaactgtat---------ccc---tta---acttccctcagatcactctttggcaacgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,3fw,11fw,12rev","1fw,3fw,11fw","12rev",4,3,1
"AY588970",">Ref.19_cpx.CU.99.CU38.AY588970","Ref","19_cpx","CU","99","CU38","AY588970",92,2013,1,30,1474,1503,"atgggtgcgagagcgtcggtattaagcggg","ctctttggcaacgaccccttgtcacagtaa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcggtattaagcgggggaaaattagatgcatgggaaagaattcggttaaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagggagctggaaagattcgcagttgaccctggccttttagaaacagcagaaggatgtcagcaaataatagaacagttacaaccagctctcaagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctggtgtgtacatcaaaggataccagtaaaagataccaaggaagctttagataaaatagaggaagtacaaaataagaacaagcaaaagacacagcaggcaacagctgacacaagacacagcagccaggtcagccaaaattatcctatagtacaaaacctgcaggggcaaatggtacaccagtccctatcacctagaactttgaacgcatgggtaaaggtaatagaagagaaggctttcaacccagaagtaatacccatgttttcagcattgtcagaaggagccaccccacaggatttaaacactatgttaaacacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggataggttacatccagtgcatgcagggcctattgcaccaggtcagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcctggatgacatccaatccacctgtcccagtaggagagatatataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaggaaccctttagagactatgtagatcggttctataaaaccctaagagccgagcaagcttcacaggatgtaaaaaattggatgacagaaaccttgttggtccaaaatgcgaacccagattgtaaaactatcctaaaagcattggggccagcggctacattagaggaaatgatgacagcatgtcagggagtgggaggacccagtcataaagcaagagttttagctgaggcaatgagccaagcaacaaattcaaatgctgccataatgatgcagaaaggtaattttaagggcctaagaagagttgttaagtgtttcaactgtggcaaagaagggcacatagcaaaaaattgcagagcccctaaaaaaaagggctgttggaaatgtggaaaggaagggcaccaaatgaaagattgcactgaaagacaggctaattttttagggaaaatttggccttcccacaaggggaggccaggaaacttccttcagagcagaccagagccaacagccccaccgaagagagcttcgggtttggggaggaaacaaccccctctcagaaacaggaacagaaagacaaggaactgtatccctttaacctccctcagatcactctttggcaacgaccccttgtcacagtaa","atgggtgcgagagcgtcggtattaagcgggggaaaattagatgcatgggaaagaattcggttaaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagggagctggaaagattcgcagttgaccctggccttttagaaacagcagaaggatgtcagcaaataatagaacagttacaaccagctctcaagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctggtgtgtacatcaaaggataccagtaaaagataccaaggaagctttagataaaatagaggaagtacaa------------aat---------------------aag---------------aacaag------caaaag---------------------------------acacagcaggcaacagct---------------------------------gacacaaga------------------------------------------------------------------------------------------cacagcagccag------------------gtcagccaaaattatcctatagtacaaaacctgcaggggcaaatggtacaccagtccctatcacctagaactttgaacgcatgggtaaaggtaatagaa---gagaaggctttcaacccagaagtaatacccatgttttcagcattgtcagaaggagccaccccacaggatttaaacactatgttaaacacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggataggttacatccagtgcatgcagggcctattgcaccaggtcagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcctggatgaca---------tccaatccacctgtc---ccagtaggagagatatataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaggaaccctttagagactatgtagatcggttctataaaaccctaagagccgagcaagcttcacaggatgtaaaaaattggatgacagaaaccttgttggtc---caaaatgcgaacccagattgtaaaactatcctaaaagcattggggccagcggctacattagaggaaatgatgacagcatgtcagggagtgggaggacccagtcataaagcaagagttttagctgaggcaatg------------agccaagcaacaaattca------------------aatgctgccataatgatgcagaaa---ggtaat---tttaagggc---ctaaga---agagttgttaagtgtttcaactgtggcaaagaagggcacatagcaaaaaattgcagagcccctaaaaaaaagggctgttggaaatgtggaaaggaagggcaccaaatgaaagattgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggccaggaaacttccttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccgaa----gagagcttcgggtttggg---------------gaggaaaca---accccctct------------------------cagaaacaggaacag------------------------aaagacaag---------------------gaactgtat---------ccct--tta---acctccctcagatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,3fw,4rev,7rev,10rev,11fw,12rev","1fw,3fw,11fw","4rev,7rev,10rev,12rev",7,3,4
"AY894994",">Ref.19_cpx.CU.99.CU7.AY894994","Ref","19_cpx","CU","99","CU7","AY894994",93,2013,1,30,1474,1503,"atgggggcgagagcatcattattaagtggg","ctctttggcaacgaccccttgtcacaataa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggggcgagagcatcattattaagtgggggaaaattagatgcatgggaaaaaattcggttaagtcccgggggaaagaaacaatatagaatgaaacatttagtatgggcaagcagggagttggaaagattcgcaattaaccctagccttttagaatcagcagaaggatgtcagcaaataatagaacagttacaatcaactctcaagacaggatcagaagaacttagatcattatttaatacagtagcaaccctctggtgcgtacatcagcagatagaggtaaaagacaccaaggaagctttagataaattagaggaagtacagaataagagcaagcaaaagacacagcaggaaacagctgacacaaggaacagcagccacgtcagccaaaattatcctatagtgcacaagctgcaggggcaaatggtacatcaggccctgtcacctagaactttgaacgcgtgggtaaaagtaatagaagagaaggctttcaacccagaagtaatacccatgttttcagcgttgtcagaaggagccaccccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggataggttacatccagtgcatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcctggatgacatccaatccacctatcccagtaggagagatatataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaaggaccaaaggaaccctttagagactatgtagatcggttctataaaactctaagagccgagcaagcttcacaggatgtaaaaaattggatgactgaaaccttgttggtccaaaatgcaaacccagattgtaaaactatcctaaaagcattgggaccaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacctagtcataaagcaagagttttggctgaggcaatgagccaagcaacaaattcacatgctaccataatgatgcagaaaggtaattttaagggcctaagaaaagttgttaagtgtttcaactgtggcaaagaagggcacatagcaagaaattgcagagcccctagaaaaaagggctgttggaaatgtggaaaggaagggcaccaaatgaaagattgcactgaaagacaggctaattttttagggaaaatttggccttcccacaaggggaggccaggaaacttccttcagagcagaccagagccaacagccccaccagaagagagcttcgggtttggggaggaaataaccccctctcagaaacaggatcagaaagacaaggaactgtatcccttagcctccctcaaatcactctttggcaacgaccccttgtcacaataa","atgggggcgagagcatcattattaagtgggggaaaattagatgcatgggaaaaaattcggttaagtcccgggggaaagaaacaatatagaatgaaacatttagtatgggcaagcagggagttggaaagattcgcaattaaccctagccttttagaatcagcagaaggatgtcagcaaataatagaacagttacaatcaactctcaagacaggatcagaagaacttagatcattatttaatacagtagcaaccctctggtgcgtacatcagcagatagaggtaaaagacaccaaggaagctttagataaattagaggaagtacag------------aat---------------------aag---------------agcaag------caaaag---------------------------------acacagcaggaaacagct---------------------------------gacacaagg------------------------------------------------------------------------------------------aacagcagccac------------------gtcagccaaaattatcctatagtgcacaagctgcaggggcaaatggtacatcaggccctgtcacctagaactttgaacgcgtgggtaaaagtaatagaa---gagaaggctttcaacccagaagtaatacccatgttttcagcgttgtcagaaggagccaccccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggataggttacatccagtgcatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaatagcctggatgaca---------tccaatccacctatc---ccagtaggagagatatataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaaggaccaaaggaaccctttagagactatgtagatcggttctataaaactctaagagccgagcaagcttcacaggatgtaaaaaattggatgactgaaaccttgttggtc---caaaatgcaaacccagattgtaaaactatcctaaaagcattgggaccaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacctagtcataaagcaagagttttggctgaggcaatg------------agccaagcaacaaattca------------------catgctaccataatgatgcagaaa---ggtaat---tttaagggc---ctaaga---aaagttgttaagtgtttcaactgtggcaaagaagggcacatagcaagaaattgcagagcccctagaaaaaagggctgttggaaatgtggaaaggaagggcaccaaatgaaagattgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggccaggaaacttccttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagaa---gagagcttcgggtttggg---------------gaggaaata---accccctct------------------------cagaaacaggatcag------------------------aaagacaag---------------------gaactgtat---------ccc---tta---gcctccctcaaatcactctttggcaacgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"AY586545",">Ref.20_BG.CU.99.Cu103.AY586545","Ref","20_BG","CU","99","Cu103","AY586545",94,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgaatgggagaaaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatctcgtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagaaacagtagaaggttgtcaacaaataataaaccagttacaaccagctctcaaaacaggaacagaggagcttaagtcattatttaatacagtagcaaccctctattgtgtacatcaaaggataggggtaaaagacaccaaagaagctctagatgaagtggaaaagttacaaaagaaaagtcagcaaaaaatgcaacaggcagcaacgggtgaaggaaacagcagccaagtcagccaaaattatcctatagtgcagaatgcacaagggcaaccaatacaccaggccatatcacctaggactttaaatgcatgggtaaaggtagtggaagaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacaccgtgggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggacacacccacagcaggcagggcctatcccaccaggtcagataagagagccaaggggaagcgatatagcaggagctactagtaccctacaggaacaaataacatggatgaccaacaatccacctatcccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtaagcattttggatataaaacaagggccaaaagaaccctttagagattatgtagataggttcttcaaaactttacgagctgagcaagctacacaggaggtaaaaggctggatgacagacaccttgttggtccaaaatgcgaacccagactgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgccagggagtgggaggacccggccataaagcaagagttttagctgaagcaatgagccaggtatcaggtgcaggagcatccatactgatgcaaaaaagcaattttaagggcccaaaaagaaatattaagtgttttaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaggactgcacagagagacaggctaattttttagggaaactttggccttcccacaagggaaggccagggaattttctccagagcaggccagagccaacagccccacctgcagagagcttcgggttcggagaggagatagctccctccccgaagcaagggcagaaggagaaggacttaatctccctcaaatcactctttggcagcgacccctagtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgaatgggagaaaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatctcgtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagaaacagtagaaggttgtcaacaaataataaaccagttacaaccagctctcaaaacaggaacagaggagcttaagtcattatttaatacagtagcaaccctctattgtgtacatcaaaggataggggtaaaagacaccaaagaagctctagatgaagtggaaaagttacaa------------aag---------------------aaa---------------agtcag------caaaaa---------------------------------atgcaacaggcagcaacg---------------------------------ggtgaagga------------------------------------------------------------------------------------------aacagcagccaa------------------gtcagccaaaattatcctatagtgcagaatgcacaagggcaaccaatacaccaggccatatcacctaggactttaaatgcatgggtaaaggtagtggaa---gaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacaccgtgggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggacacacccacagcaggcagggcctatcccaccaggtcagataagagagccaaggggaagcgatatagcaggagctactagtaccctacaggaacaaataacatggatgacc---------aacaatccacctatc---ccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtaagcattttggatataaaacaagggccaaaagaaccctttagagattatgtagataggttcttcaaaactttacgagctgagcaagctacacaggaggtaaaaggctggatgacagacaccttgttggtc---caaaatgcgaacccagactgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgccagggagtgggaggacccggccataaagcaagagttttagctgaagcaatg------------agccaggtatcaggtgca------------------ggagcatccatactgatgcaaaaa---agcaat---tttaagggc---ccaaaa---agaaatattaagtgttttaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaggactgcaca---------gag---agacaggctaattttttagggaaactttgg---cct---tcccacaag---------gga---aggccagggaattttctccagagc------------------------------aggcca------gagccaacagcc---------------------------------------------------ccacctgca---gagagcttcgggttcgga---------------gaggagata---gctccctcc------------------------ccgaagcaagggcag------------------------aaggagaag---------------------gac---------------------tta---atctccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,10rev,12rev",6,2,4
"AY945737",">Ref.21_A2D.KE.91.KNH1254.AY945737","Ref","21_A2D","KE","91","KNH1254","AY945737",95,2013,0,23,1468,1497,"gcgagagcgtcagtattaagcgg","ctctttggcaacgaccccttgtcacagtaa",1,30,0,23,1,30,1984,2013,1468,1497,1984,2013,"gcgagagcgtcagtattaagcgggggaaaattagatgcctgggaaaaaattcggttacggccaggaggaaagaaaaaatatagactaaagcatctagtatgggcaagcagggagctagaacgatttgcaattaaccctggccttttagaaacatcagaaggctgtaaacaaataatagtacagctacaaccatctattcagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtacatgraaggatagatgtaagagacaccaaggaagctttagaaaagatagaggaagaacaaaacaaaagtaagaacaaaaaggtgcagcaagcaacagctgacacaaagaacagcagccaggtcagccaaaattaccccatagtgcaaaatgcacaaggacaatgggtacaccaagccatatcacctaggaccttgaatgcatgggtcaaagtagtagaagaaaaggctttcaacccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggtcatcaagcagccatgcaaatgctaaaagagaccatcaatgaggaagctgcagaatgggataggttacatccaatacatgcagggcctattgcaccaggccagataagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaatagcatggatgacaggcaacccacctatcccagtaggggaaatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctgtcagcattctagacataagacagggaccaaaggaaccttttagagactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggaagtaaaaaattggatgacagacaccttgctggtccaaaatgcgaacccagattgtaaatccatcttgaaagcattaggaccaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagagttctagctgaggcaatgagccaagcaacgagctcagctgctgcagtaatgatgcagagaggcaattttaagggcccaagaaaaattattaagtgtttcaactgtggcaaagaagggcacatagcaaagaattgcagggcccctaggaaaaagggctgttggaaatgtggaagggaagggcaccaaatgaaagattgtacggagagacaggctaattttttagggaaggtttggccttcccacaaggggaggccggggaactttcttcagagcaggccagagccaacagccccaccagcagagagcttcgggtttggggaagagataaccccctctcagaaacgggagcagaaagaggaactgtatcccttaacttccctcaaatcactctttggcaacgaccccttgtcacagtaa","------gcgagagcgtcagtattaagcgggggaaaattagatgcctgggaaaaaattcggttacggccaggaggaaagaaaaaatatagactaaagcatctagtatgggcaagcagggagctagaacgatttgcaattaaccctggccttttagaaacatcagaaggctgtaaacaaataatagtacagctacaaccatctattcagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtacatgraaggatagatgtaagagacaccaaggaagctttagaaaagatagaggaagaacaa------------aac---------------------aaa---------------agtaagaac---aaaaag---------------------------------gtgcagcaagcaacagct---------------------------------gacacaaag------------------------------------------------------------------------------------------aacagcagccag------------------gtcagccaaaattaccccatagtgcaaaatgcacaaggacaatgggtacaccaagccatatcacctaggaccttgaatgcatgggtcaaagtagtagaa---gaaaaggctttcaacccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggtcatcaagcagccatgcaaatgctaaaagagaccatcaatgaggaagctgcagaatgggataggttacatccaatacatgcagggcctattgcaccaggccagataagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaatagcatggatgaca---------ggcaacccacctatc---ccagtaggggaaatctataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctgtcagcattctagacataagacagggaccaaaggaaccttttagagactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggaagtaaaaaattggatgacagacaccttgctggtc---caaaatgcgaacccagattgtaaatccatcttgaaagcattaggaccaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagagttctagctgaggcaatg------------agccaagcaacgagctca------------------gctgctgcagtaatgatgcagaga---ggcaat---tttaagggc---ccaaga---aaaattattaagtgtttcaactgtggcaaagaagggcacatagcaaagaattgcagggcccctaggaaaaagggctgttggaaatgtggaagggaagggcaccaaatgaaagattgtacg---------gag---agacaggctaattttttagggaaggtttgg---cct---tcccacaag---------ggg---aggccggggaactttcttcagagc------------------------------aggcca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggtttggg---------------gaagagata---accccctct------------------------cagaaacgggagcag------------------------aaagag------------------------gaactgtat---------ccc---tta---acttccctcaaatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","2rev,4rev,7rev,10rev,11fw,12rev","11fw","2rev,4rev,7rev,10rev,12rev",6,1,5
"AF457051",">Ref.21_A2D.KE.99.KER2003.AF457051","Ref","21_A2D","KE","99","KER2003","AF457051",96,2013,0,23,1468,1497,"gcgagagcgtcagtattaagcgg","ctctttggcaacgaccccttgttacaataa",1,30,0,23,1,30,1984,2013,1468,1497,1984,2013,"gcgagagcgtcagtattaagcgggggaaaattagatgcttgggaaaaaattcggttacggccaggaggaaagaaacaatacagactaaaacatttagtatgggcaagcagggagctagaacgatttgcaattaatcctggccttttagagacatcagaaggctgtaaacaaataatagggcagctacaaccatctattcagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtacatgcaagaatagatgtaaaagacaccaaggaagctttagacaagatagaggaagaacaaaacaaaagtaagaacaaagcgcagccagcagcagctaacacagggaacagcagccaggtcagccaaaattaccccatagtgcaaaatgcacaagggcaatgggtacaccaggccatatcccctaggactttgaatgcatgggtcaaagtagtagaagaaaaggctttcaacccagaagtaatacccatgttttcagcattatcagaaggagctaccccatcagatttaaactccatgctaaacacagtggggggtcatcaagcagccatgcaaatgctaaaagagaccatcaatgaggaagccgcggaatgggataggttacatccagtgcaggcagggcctattgcaccaggccagatgagagaaccaagaggaagtgacatagcaggaactactagtacccttcaggaacaaatagcatggatgacaggcaatccacctatcccagtaggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttagacataagacagggaccaaaggaaccttttagagattatgtagaccggttctataaaactctaagagccgaacaagcttcacaggaagtaaaaaattggatgacagacaccttgctggtccaaaatgcgaacccagattgtaaatccatcttgaaagcattaggaccaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacccagtcataaagcaagagtgctagctgaggcaatgagccaagcaacaaactcagctgttacagtaatgatgcagagaggcaattttaagggcccaaaaagaattattaagtgttttaactgtggcaaagaagggcacatagcaaaaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaagggcaccaaatgagagattgcacggaaagacaggctaattttttagggaaaatttggccttcctccaaggggaggccggggaactttcttcagagcaggtcagagccaacagccccaccagcagagatgttcgggttcggggaagagataaccccctctcagaaacaggagcagaaagacaaggaactgtatccctcagtttccctcaaatcactctttggcaacgaccccttgttacaataa","------gcgagagcgtcagtattaagcgggggaaaattagatgcttgggaaaaaattcggttacggccaggaggaaagaaacaatacagactaaaacatttagtatgggcaagcagggagctagaacgatttgcaattaatcctggccttttagagacatcagaaggctgtaaacaaataatagggcagctacaaccatctattcagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtacatgcaagaatagatgtaaaagacaccaaggaagctttagacaagatagaggaagaacaa------------aac---------------------aaa---------------agtaag------aacaaa---------------------------------gcgcagccagcagcagct---------------------------------aacacaggg------------------------------------------------------------------------------------------aacagcagccag------------------gtcagccaaaattaccccatagtgcaaaatgcacaagggcaatgggtacaccaggccatatcccctaggactttgaatgcatgggtcaaagtagtagaa---gaaaaggctttcaacccagaagtaatacccatgttttcagcattatcagaaggagctaccccatcagatttaaactccatgctaaacacagtggggggtcatcaagcagccatgcaaatgctaaaagagaccatcaatgaggaagccgcggaatgggataggttacatccagtgcaggcagggcctattgcaccaggccagatgagagaaccaagaggaagtgacatagcaggaactactagtacccttcaggaacaaatagcatggatgaca---------ggcaatccacctatc---ccagtaggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttagacataagacagggaccaaaggaaccttttagagattatgtagaccggttctataaaactctaagagccgaacaagcttcacaggaagtaaaaaattggatgacagacaccttgctggtc---caaaatgcgaacccagattgtaaatccatcttgaaagcattaggaccaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacccagtcataaagcaagagtgctagctgaggcaatg------------agccaagcaacaaactca------------------gctgttacagtaatgatgcagaga---ggcaat---tttaagggc---ccaaaa---agaattattaagtgttttaactgtggcaaagaagggcacatagcaaaaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaagggcaccaaatgagagattgcacg---------gaa---agacaggctaattttttagggaaaatttgg---cct---tcctccaag---------ggg---aggccggggaactttcttcagagc------------------------------aggtca------gagccaacagcc---------------------------------------------------ccaccagca---gagatgttcgggttcggg---------------gaagagata---accccctct------------------------cagaaacaggagcag------------------------aaagacaag---------------------gaactgtat---------ccc---tca---gtttccctcaaatcactctttggcaacgaccccttgttacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","","","4rev,7rev,8rev,10rev,12rev",0,0,5
"AF457072",">Ref.21_A2D.KE.99.KSM4001.AF457072","Ref","21_A2D","KE","99","KSM4001","AF457072",97,2013,0,23,1474,1503,"gcgagagcgtcagtattaagcgg","ctctttggcaacgaccccttgtcacagtaa",1,30,0,23,1,30,1984,2013,1474,1503,1984,2013,"gcgagagcgtcagtattaagcgggggaaaattagatgcctgggaaaaaattcggttacggccaggaggaaagaaaacatatagactaaaacatctaatatgggcaagcagggagttagaacgatttgcacttaatcctggccttttagagacatcagaaggctgtaaacaaataataggacagctacaaccagctcttaagacagggtcagaagaattaagatcattatttaatacagtggcaaccctctattgtgtacatgaaaggatagaggtaaaagacacccaagaagctttagacaaattggaggaagaacaaaacaaaagtaagaccaaaaaggcacagcaagcagcagctaacacagggaccaacagccaggttagccaaaattatcccatagtgcaaaatgcacaagggcaatgggtacaccaggccatatcacctaggaccttgaatgcatgggtcaaggtagtagaagaaaaggctttcaacccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggtcatcaagcagccatgcaaatgctaaaagagaccatcaatgaggaagctgcagaatgggataggctacatccagtgcatgcagggcctgttgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacagatagcatggatgacaagcaacccacctatcccagtaggagaaatctataaaagatggataatcctggggttaaacaaaatagtaagaatgtatagccctgtcagcattttagacataagacagggaccaaaggaaccttttagagactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggaagtaaaaaattggatgacagacaccttgctggtccaaaatgcaaacccagattgtaaatccatcttgaaagcactaggaccagcggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccggccataaggcaagagttctagctgaggcaatgagccaagcaacaaattcagcaatgatgatgcagagaggcaattttaagggctcaagaaaaactattaagtgtttcaactgtggcaaggaagggcacatagccagaaattgtagggcccctaggaaaaagggctgttggaaatgtggaagggaagggcatcaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccaacaaggggaggccggggaactttcttcagggcagaccagaaccaacagcgccaacagccccaccagcagagagcttcgggtttggggaagagataacctcctctcagaaacaggagcagaaagacaaggaaccgaatcccttaacttccctcaaatcactctttggcaacgaccccttgtcacagtaa","------gcgagagcgtcagtattaagcgggggaaaattagatgcctgggaaaaaattcggttacggccaggaggaaagaaaacatatagactaaaacatctaatatgggcaagcagggagttagaacgatttgcacttaatcctggccttttagagacatcagaaggctgtaaacaaataataggacagctacaaccagctcttaagacagggtcagaagaattaagatcattatttaatacagtggcaaccctctattgtgtacatgaaaggatagaggtaaaagacacccaagaagctttagacaaattggaggaagaacaa------------aac---------------------aaa---------------agtaagacc---aaaaag---------------------------------gcacagcaagcagcagct---------------------------------aacacaggg------------------------------------------------------------------------------------------accaacagccag------------------gttagccaaaattatcccatagtgcaaaatgcacaagggcaatgggtacaccaggccatatcacctaggaccttgaatgcatgggtcaaggtagtagaa---gaaaaggctttcaacccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggtcatcaagcagccatgcaaatgctaaaagagaccatcaatgaggaagctgcagaatgggataggctacatccagtgcatgcagggcctgttgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacagatagcatggatgaca---------agcaacccacctatc---ccagtaggagaaatctataaaagatggataatcctggggttaaacaaaatagtaagaatgtatagccctgtcagcattttagacataagacagggaccaaaggaaccttttagagactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggaagtaaaaaattggatgacagacaccttgctggtc---caaaatgcaaacccagattgtaaatccatcttgaaagcactaggaccagcggctacattagaagaaatgatgacagcatgtcagggagtgggaggacccggccataaggcaagagttctagctgaggcaatg------------agccaagcaaca------------------------aattcagcaatgatgatgcagaga---ggcaat---tttaagggc---tcaaga---aaaactattaagtgtttcaactgtggcaaggaagggcacatagccagaaattgtagggcccctaggaaaaagggctgttggaaatgtggaagggaagggcatcaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccggggaactttcttcagggc------------------------------agacca------gaaccaacagcg------------------------------------ccaacagcc------ccaccagca---gagagcttcgggtttggg---------------gaagagata---acctcctct------------------------cagaaacaggagcag------------------------aaagacaag---------------------gaaccgaat---------ccc---tta---acttccctcaaatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","10rev,11fw,12rev","11fw","10rev,12rev",3,1,2
"AY371159",">Ref.22_01A1.CM.01.01CM_0001BBY.AY371159","Ref","22_01A1","CM","01","01CM_0001BBY","AY371159",98,2013,0,23,1471,1500,"gcgagagcgtcagtattacgtgg","ctctttggcaacgaccccttgtcacaataa",1,30,0,23,1,30,1984,2013,1471,1500,1984,2013,"gcgagagcgtcagtattacgtgggggaaaattagatgcatgggagaaaattcggttaagaccagggggaaagaaacaatatagaatgaaacatttagtatgggcaagcagagagttagacagattcgcacttgaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacaaccaagtctcaagacaggatcagaagaaattaaatcattatataatacaatagcaaccctctattgtgtacatcaacggatagatgtaaaagacaccaaggaagctttagataaaatagaggagatacaaaataagagcaagcaaaagacacagcagggagcagctggcacaggaagcagcagcaacgtcagccaaaattaccctatagtgcaaaatgcacaagggcagatgatacatcaggctttatcacctagaactttgaatgcatgggtgaaagtagtagaagagaagggatttaacccagaagtaatacccatgttctcagcattatcagagggaaccaccccaacagatttaaatatgatgctaaacataatagggggacaccaggcagcgatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggataggatgcacccagtacaggcagggccttatccaccaggccagatgagagaaccaagggggagtgacatagcaggaactactagtacccttcaagaacaaatagcatggatgacaagcaaccctcctgtcccagtgggagaaatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtggacaggttttttaaaactctcagagcggaacaggctacacaggatgtgaaaaattggatgacagaaaccttgctagtccaaaatgcgaacccagactgtaaatccattttaagagcattagggacaggggctacattggaagaaatgatgacagcatgccagggagtgggaggaccgggccataaagcaagggttttagctgaggcaatgagtcaagtacaacatacaggtataatgatgcagagaggcaattttaagggccagaaaagaattaagtgtttcaactgtggcaaagaaggacacctaaccagaaattgcagggcccctagaagaaagggttgctggaaatgtgggaaggaaggacaccaaatgaaagactgcactcttactcttgagagacaggctaattttttagggaaaatttggccttccagcaaggggaggccagggaactttcctcagggcagacccgagccaacagccccaccagcagagagcgtggggatgggggaagagataacctcctcccagaagcaggagcagagagagaaggaacagcctcctcctttagtttccctcaaatcactctttggcaacgaccccttgtcacaataa","------gcgagagcgtcagtattacgtgggggaaaattagatgcatgggagaaaattcggttaagaccagggggaaagaaacaatatagaatgaaacatttagtatgggcaagcagagagttagacagattcgcacttgaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacaaccaagtctcaagacaggatcagaagaaattaaatcattatataatacaatagcaaccctctattgtgtacatcaacggatagatgtaaaagacaccaaggaagctttagataaaatagaggagatacaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------acacagcagggagcagct---------------------------------ggcacagga------------------------------------------------------------------------------------------agcagcagcaac------------------gtcagccaaaattaccctatagtgcaaaatgcacaagggcagatgatacatcaggctttatcacctagaactttgaatgcatgggtgaaagtagtagaa---gagaagggatttaacccagaagtaatacccatgttctcagcattatcagagggaaccaccccaacagatttaaatatgatgctaaacataatagggggacaccaggcagcgatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggataggatgcacccagtacaggcagggccttatccaccaggccagatgagagaaccaagggggagtgacatagcaggaactactagtacccttcaagaacaaatagcatggatgaca---------agcaaccctcctgtc---ccagtgggagaaatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtggacaggttttttaaaactctcagagcggaacaggctacacaggatgtgaaaaattggatgacagaaaccttgctagtc---caaaatgcgaacccagactgtaaatccattttaagagcattagggacaggggctacattggaagaaatgatgacagcatgccagggagtgggaggaccgggccataaagcaagggttttagctgaggcaatg------------agtcaagtacaa------------------------catacaggtataatgatgcagaga---ggcaat---tttaagggc---cagaaa---aga---attaagtgtttcaactgtggcaaagaaggacacctaaccagaaattgcagggcccctagaagaaagggttgctggaaatgtgggaaggaaggacaccaaatgaaagactgcactcttactcttgag---agacaggctaattttttagggaaaatttgg---cct---tccagcaag---------ggg---aggccagggaactttcctcagggc------------------------------agaccc------gagccaacagcc---------------------------------------------------ccaccagca---gagagcgtggggatgggg---------------gaagagata---acctcctcc------------------------cagaagcaggagcag------------------------agagagaag---------------------gaacagcct------cctcct---tta---gtttccctcaaatcactctttggcaacgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","4rev,7rev,10rev,11fw,12rev","11fw","4rev,7rev,10rev,12rev",5,1,4
"GQ229529",">Ref.22_01A1.CM.02.02CM_3097MN.GQ229529","Ref","22_01A1","CM","02","02CM_3097MN","GQ229529",99,2013,0,23,1447,1476,"gcgagagcgtcagtattaagtgg","ctctttggcaacgaccccttgttacaataa",1,30,0,23,1,30,1984,2013,1447,1476,1984,2013,"gcgagagcgtcagtattaagtgggggaaaattagatgcatgggaraaaattcggttaaggccagggggaaagaaacaatatagaatgaaacatttagtatgggcaagcagagagytagaaagattcgcacttaaccccggtcttttagaaacagcagaaggatgtcaacaaataatagaacagttacaatcaactctcaagacaggatcagaagaacttagatcattatataatacagtggcaaccctctattgtgtacatcaaaggatagatgtaaaagacaccaaggaagctttagataaaatagaggagatacaaaataagagcaagcaaaaggcacagcaggcagcagctggcgcagtcagccaaaattacccgataatgcaaaatgcacaagggcaaatggtacatcaggctgtatcacctaggactttgaatgcatgggtraaagtagtggaagaaaagggytttaacccagaggtaatacccatgttcacagcattatcagarggagctaccccacaagatttaaattcgatgctaaacatagtggggggacaccaggcagcaatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggataggatgcacccagtacatgcagggcctaatccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgacaagtaaccctcctatcccagtgggagaaatctataaaaggtggataattctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttttttaaaactctcagagcggaacaggctacacaggatgtaaagaactggatgacagaaaccttgctagtccaaaatgcgaacccagactgtaagtccattttaagagcattaggaacaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagggttctagctgaggcaatgagtcaagtacaacatccaggtataatgatgcagagaggcaattttaagggccagaaaagaattaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaagaaagggttgttggaaatgtgggaaggaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggccttccagcaaagggaggccagggaattttcctcagagcagamcagagccaacagccccaccaatagagagctttgggatgggggaagagataaccccctccccgaagcaggagcagagagacagggaacagcctcttccctcagtctccctcaaatcactctttggcaacgaccccttgttacaataa","------gcgagagcgtcagtattaagtgggggaaaattagatgcatgggaraaaattcggttaaggccagggggaaagaaacaatatagaatgaaacatttagtatgggcaagcagagagytagaaagattcgcacttaaccccggtcttttagaaacagcagaaggatgtcaacaaataatagaacagttacaatcaactctcaagacaggatcagaagaacttagatcattatataatacagtggcaaccctctattgtgtacatcaaaggatagatgtaaaagacaccaaggaagctttagataaaatagaggagatacaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------gcacagcaggcagcagct---------------------------------ggc---gca------------------------------------------------------------------------------------------------------------------------gtcagccaaaattacccgataatgcaaaatgcacaagggcaaatggtacatcaggctgtatcacctaggactttgaatgcatgggtraaagtagtggaa---gaaaagggytttaacccagaggtaatacccatgttcacagcattatcagarggagctaccccacaagatttaaattcgatgctaaacatagtggggggacaccaggcagcaatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggataggatgcacccagtacatgcagggcctaatccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------agtaaccctcctatc---ccagtgggagaaatctataaaaggtggataattctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttttttaaaactctcagagcggaacaggctacacaggatgtaaagaactggatgacagaaaccttgctagtc---caaaatgcgaacccagactgtaagtccattttaagagcattaggaacaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagggttctagctgaggcaatg------------agtcaagtacaa------------------------catccaggtataatgatgcagaga---ggcaat---tttaagggc---cagaaa---aga---attaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaagaaagggttgttggaaatgtgggaaggaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tccagcaaa---------ggg---aggccagggaattttcctcagagc------------------------------agamca------gagccaacagcc---------------------------------------------------ccaccaata---gagagctttgggatgggg---------------gaagagata---accccctcc------------------------ccgaagcaggagcag------------------------agagacagg---------------------gaacagcct------cttccc---tca---gtctccctcaaatcactctttggcaacgaccccttgttacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","2rev,4rev,7rev,10rev,11fw,12rev","11fw","2rev,4rev,7rev,10rev,12rev",6,1,5
"AY900571",">Ref.23_BG.CU.03.CB118.AY900571","Ref","23_BG","CU","03","CB118","AY900571",100,2013,1,30,1468,1497,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1468,1497,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagaaaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatctcgtatgggcaagcagggagctggacagatttgcacttaaccctggccttttagaaacagcagaaggttgtcaacaaataatgagccagttgcaaccagctctcaaaacaggaacagaggaaattaagtcattatttaatgcagtagcaaccctctattgtgtacatcaaaggatagaggtaaaagacaccaaagaagctctagatgaagtggaaaagttacaaaagaaaagtcagcaaaaaatgcaacaggcagcaacgggtgaaggaaacagcggccaagtcagccaaaattatcctatagtgcagaatgcacaagggcaaccagtacaccaggccatatcacctaggactttaaatgcatgggtaaaagtagtagaagaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaatacagtggggggacatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggctacacccacagcaagcagggcctatcgcaccaggtcaaataagagagccaaggggaagcgatatagcaggaaccactagtaccctacaggaacagataagatggatgaccaacaatccacctatcccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtaagcattttggatataaaacaagggccaaaagagccttttagagattatgtagatagattcttcaaaactttacgagctgagcaagctacacaggaagtaaaaggctggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccatcttaagagcattaggaccaggagctagtctagaagaaatgatgacagcatgtcagggagtaggaggacctggccataaagcaagagttttagctgaagcaatgagccagataccaggtgcaggagcatccataatgatgcaaagaagcaactttaagggcccaaaaagaaatattaagtgttttaactgtggcaaagatggacacctagccagaaattgcagggcccctaggaaaaagggatgttggaaatgtggaaaggatggacatcaaatgaaagactgcacagaagggagacaggctaattttttagggaaactttggccttcccacaagggaaggccagggaactttcctcagaacaggctagagccaacagccccacctgcagagagcttcggattcggagaggagatagccccctccccgaagcaagggccgaaggagcaggacttaatctccctcaaatcactctttggcagcgacccctagtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagaaaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatctcgtatgggcaagcagggagctggacagatttgcacttaaccctggccttttagaaacagcagaaggttgtcaacaaataatgagccagttgcaaccagctctcaaaacaggaacagaggaaattaagtcattatttaatgcagtagcaaccctctattgtgtacatcaaaggatagaggtaaaagacaccaaagaagctctagatgaagtggaaaagttacaa------------aag---------------------aaa---------------agtcag------caaaaa---------------------------------atgcaacaggcagcaacg---------------------------------ggtgaagga------------------------------------------------------------------------------------------aacagcggccaa------------------gtcagccaaaattatcctatagtgcagaatgcacaagggcaaccagtacaccaggccatatcacctaggactttaaatgcatgggtaaaagtagtagaa---gaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaatacagtggggggacatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggctacacccacagcaagcagggcctatcgcaccaggtcaaataagagagccaaggggaagcgatatagcaggaaccactagtaccctacaggaacagataagatggatgacc---------aacaatccacctatc---ccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtaagcattttggatataaaacaagggccaaaagagccttttagagattatgtagatagattcttcaaaactttacgagctgagcaagctacacaggaagtaaaaggctggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccatcttaagagcattaggaccaggagctagtctagaagaaatgatgacagcatgtcagggagtaggaggacctggccataaagcaagagttttagctgaagcaatg------------agccagataccaggtgca------------------ggagcatccataatgatgcaaaga---agcaac---tttaagggc---ccaaaa---agaaatattaagtgttttaactgtggcaaagatggacacctagccagaaattgcagggcccctaggaaaaagggatgttggaaatgtggaaaggatggacatcaaatgaaagactgcacagaa------ggg---agacaggctaattttttagggaaactttgg---cct---tcccacaag---------gga---aggccagggaactttcctcagaac------------------------------aggcta------gagccaacagcc---------------------------------------------------ccacctgca---gagagcttcggattcgga---------------gaggagata---gccccctcc------------------------ccgaagcaagggccg------------------------aaggagcag---------------------gac---------------------tta---atctccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"AY900572",">Ref.23_BG.CU.03.CB347.AY900572","Ref","23_BG","CU","03","CB347","AY900572",101,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagcggggggaaattagatgcatgggagaaaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatctcgtatgggcaagcagggagctggaaagatttgcactcaaccctggccttttagagtcagcaggaggttgtcaacaaataatgagccaattgcaaccagctctccaaacaggaacagaggaacttaagtccttatataatacagtagcaaccctctattgtgtacatcaaaagatagaggtaaaagacaccaaagaagctctagatgaagtggaaaaattacaaaagaaaagtcagcaaaaaatgcaacaggcagcaacaggtgaaggaagcagcagccaagtcagccaaaattatcctatagtgcagaatgcacaagggcaaccaatacaccaggccatatcacctaggactttaaatgcatgggtaaaagtagtagaagaaaaggctttcagtccagaagtaatacccatgttctcagcattatcagaaggagccaccccacaagatttaaataccatgctgaatacagtgggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggctgcacccaccgcaggcagggcctatcccaccaggtcaaataagagagccaaggggaagcgatatagcaggaactactagtaccctacaggaacagataagatggatgaccagcaatccatctatcccagtgggagaaatttataaaagatggataatcatgggattaaataaaatagtaagaatgtatagccctgtaagcattttggatataaaacaagggccaaaagaaccctttagagactatgtagacaggttcttcaaaactttacgagctgagcaagctacacaggaagtaaaaggctggatgacagacaccttgttgatccaaaatgcgaacccagattgtaagaacatcttaaaagcattaggacaaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttagctgaagcaatgagccaggtatcatgtgcaggagcatccatactgatgcaaaaaagcaactttaagggcccaaaaagaaatattaagtgttttaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcacagagagacaggctaattttttagggaaactttggccttcccacaaggggaggccagggaattttcctcagaacaggatagagccaacagccccacctgcagagagcttcgggttcggagaggagctagccccctccccgaagcaagggcagaacgagaaggacttaatctccctcaaatcactctttggcagcgacccctagtcacagtaa","atgggtgcgagagcgtcagtattaagcggggggaaattagatgcatgggagaaaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatctcgtatgggcaagcagggagctggaaagatttgcactcaaccctggccttttagagtcagcaggaggttgtcaacaaataatgagccaattgcaaccagctctccaaacaggaacagaggaacttaagtccttatataatacagtagcaaccctctattgtgtacatcaaaagatagaggtaaaagacaccaaagaagctctagatgaagtggaaaaattacaa------------aag---------------------aaa---------------agtcag------caaaaa---------------------------------atgcaacaggcagcaaca---------------------------------ggtgaagga------------------------------------------------------------------------------------------agcagcagccaa------------------gtcagccaaaattatcctatagtgcagaatgcacaagggcaaccaatacaccaggccatatcacctaggactttaaatgcatgggtaaaagtagtagaa---gaaaaggctttcagtccagaagtaatacccatgttctcagcattatcagaaggagccaccccacaagatttaaataccatgctgaatacagtgggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggctgcacccaccgcaggcagggcctatcccaccaggtcaaataagagagccaaggggaagcgatatagcaggaactactagtaccctacaggaacagataagatggatgacc---------agcaatccatctatc---ccagtgggagaaatttataaaagatggataatcatgggattaaataaaatagtaagaatgtatagccctgtaagcattttggatataaaacaagggccaaaagaaccctttagagactatgtagacaggttcttcaaaactttacgagctgagcaagctacacaggaagtaaaaggctggatgacagacaccttgttgatc---caaaatgcgaacccagattgtaagaacatcttaaaagcattaggacaaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttagctgaagcaatg------------agccaggtatcatgtgca------------------ggagcatccatactgatgcaaaaa---agcaac---tttaagggc---ccaaaa---agaaatattaagtgttttaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcaca---------gag---agacaggctaattttttagggaaactttgg---cct---tcccacaag---------ggg---aggccagggaattttcctcagaac------------------------------aggata------gagccaacagcc---------------------------------------------------ccacctgca---gagagcttcgggttcgga---------------gaggagcta---gccccctcc------------------------ccgaagcaagggcag------------------------aacgagaag---------------------gac---------------------tta---atctccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,7rev,10rev,11fw,12rev","1fw,11fw","7rev,10rev,12rev",5,2,3
"AY900574",">Ref.24_BG.CU.03.CB378.AY900574","Ref","24_BG","CU","03","CB378","AY900574",102,2013,1,30,1450,1479,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1450,1479,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagattcatgggagaaaattcggttaaggccagggggaaagaaacaatatagaatgaagcatctagtatgggcaagcagggagctggaaagatttgcactcaaccctggccttttagaaacagcagaaggttgtcaacaaatattgaaccaactgcaaccagctctcaaaacaggaacagaggagattaagtcattatttaatacagtagcaaccctctattgtgtacatcaaaggataggggtaaaagacaccaatgaagctctagaggaagtggaaaagttacaaaagaaaagtcagcaaaaaatgcaacaggcagcaacaggtgaaggaaacagcagccaagtcagccaaaattaccctatagtgcagaatgcacaagggcaaccaatacaccaggccatatcaccaaggactttaaatgcatgggtaaaagtagtagaagaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacaccgtggggggacatcaagcagcaatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacagggtacacccaccgcaggcagggcctatcccaccaggtcaaataagagagccaaggggaagcgatatagcaggaactactagtaccctacaggaacagataagatggatgaccagcaatccacctatcccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtaagcattttggatataaaacaagggccaaaagaaccctttagagattatgtagataggttctttaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgttgatccaaaatgcgaacccagactgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttagctgaagcaatgagccaggtatcaggtacaggagcatccataatgatgcaaaaaagcaattttaggggcccaagaagaaatattaagtgttttaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcacagagagacaggctaattttttagggaaactttggccttcccacaagggaaggccgggaaactttcctcagaacaggctagagccaacagccccacctgcagaggaggagatagccccctccccgaagcaagagcagaaggagaaggacttaatctccctcaaatcactctttggcagcgacccctagtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagattcatgggagaaaattcggttaaggccagggggaaagaaacaatatagaatgaagcatctagtatgggcaagcagggagctggaaagatttgcactcaaccctggccttttagaaacagcagaaggttgtcaacaaatattgaaccaactgcaaccagctctcaaaacaggaacagaggagattaagtcattatttaatacagtagcaaccctctattgtgtacatcaaaggataggggtaaaagacaccaatgaagctctagaggaagtggaaaagttacaa------------aag---------------------aaa---------------agtcag------caaaaa---------------------------------atgcaacaggcagcaaca---------------------------------ggtgaagga------------------------------------------------------------------------------------------aacagcagccaa------------------gtcagccaaaattaccctatagtgcagaatgcacaagggcaaccaatacaccaggccatatcaccaaggactttaaatgcatgggtaaaagtagtagaa---gaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacaccgtggggggacatcaagcagcaatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacagggtacacccaccgcaggcagggcctatcccaccaggtcaaataagagagccaaggggaagcgatatagcaggaactactagtaccctacaggaacagataagatggatgacc---------agcaatccacctatc---ccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtaagcattttggatataaaacaagggccaaaagaaccctttagagattatgtagataggttctttaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgttgatc---caaaatgcgaacccagactgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttagctgaagcaatg------------agccaggtatcaggtaca------------------ggagcatccataatgatgcaaaaa---agcaat---tttaggggc---ccaaga---agaaatattaagtgttttaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcaca---------gag---agacaggctaattttttagggaaactttgg---cct---tcccacaag---------gga---aggccgggaaactttcctcagaac------------------------------aggcta------gagccaacagcc---------------------------------------------------ccacctgca------------------gag---------------gaggagata---gccccctcc------------------------ccgaagcaagagcag------------------------aaggagaag---------------------gac---------------------tta---atctccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"AY900575",">Ref.24_BG.CU.03.CB471.AY900575","Ref","24_BG","CU","03","CB471","AY900575",103,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagaaaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatcttgtatgggcaagcagggagctggaaagatttgcactcaaccctggccttttagaaacagcaggaggttgtcaacaaatattgaaccaactgcaaccagctctccaaacaggaacagaggagcttaagtcattatttaatacagtagcaaccctctattgtgtacatcaaaaaatagaggtaaaagacaccaaagaagctctagaggaagtggaaaagttacaaaagaaaagtcagcaaaaaatgcagcaggcagcaacgggtgaaggaaacagcagccaagtcagccaaaattaccctatagtgcagaatgcacaagggcaaccaatgcaccaggccttatcacctaggactttaaatgcatgggtaaaagtagtagaagaaaaggcctttagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacaccgtggggggacatcaagcagcaatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggttacacccaccgcaggcagggcctatcccaccaggtcaaataagagagccaaggggaagtgatatagcaggaactactagtaacttacaggaacagataagatggatgaccagcaatccacctatcccagtgggagaaatttataaaagatggataatcttgggattaaataaaatagtaagaatgtatagccctgcaagcattttggacataaaacaagggccaaaagaaccctttagggattatgtagataggttcttcaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgttggtccaaaatgcgaacccagactgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttagctgaagcaatgagccaggtatcaggtacaggagcatccataatgatgcaaaaaagcaattttaagggcacaaaaagaaatattaagtgttttaattgtggcaaagaaggacacctagccagaaactgcagggcccctaggaaaaaaggctgttggaagtgtggaagggagggacatcaaatgaaagactgcacagagagacaggctaattttttagggaaattttggccttcccacaaggggaggccagggaattttcctcagaacaggctagagccgacagccccacctgcagagagcttcgggttcggagaggagatagccccctccccgaagcaagagcagaaggagaaggacttaatctccctcaaatcactctttggcagcgacccctagtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagaaaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatcttgtatgggcaagcagggagctggaaagatttgcactcaaccctggccttttagaaacagcaggaggttgtcaacaaatattgaaccaactgcaaccagctctccaaacaggaacagaggagcttaagtcattatttaatacagtagcaaccctctattgtgtacatcaaaaaatagaggtaaaagacaccaaagaagctctagaggaagtggaaaagttacaa------------aag---------------------aaa---------------agtcag------caaaaa---------------------------------atgcagcaggcagcaacg---------------------------------ggtgaagga------------------------------------------------------------------------------------------aacagcagccaa------------------gtcagccaaaattaccctatagtgcagaatgcacaagggcaaccaatgcaccaggccttatcacctaggactttaaatgcatgggtaaaagtagtagaa---gaaaaggcctttagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacaccgtggggggacatcaagcagcaatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggttacacccaccgcaggcagggcctatcccaccaggtcaaataagagagccaaggggaagtgatatagcaggaactactagtaacttacaggaacagataagatggatgacc---------agcaatccacctatc---ccagtgggagaaatttataaaagatggataatcttgggattaaataaaatagtaagaatgtatagccctgcaagcattttggacataaaacaagggccaaaagaaccctttagggattatgtagataggttcttcaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgttggtc---caaaatgcgaacccagactgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttagctgaagcaatg------------agccaggtatcaggtaca------------------ggagcatccataatgatgcaaaaa---agcaat---tttaagggc---acaaaa---agaaatattaagtgttttaattgtggcaaagaaggacacctagccagaaactgcagggcccctaggaaaaaaggctgttggaagtgtggaagggagggacatcaaatgaaagactgcaca---------gag---agacaggctaattttttagggaaattttgg---cct---tcccacaag---------ggg---aggccagggaattttcctcagaac------------------------------aggcta------gagccgacagcc---------------------------------------------------ccacctgca---gagagcttcgggttcgga---------------gaggagata---gccccctcc------------------------ccgaagcaagagcag------------------------aaggagaag---------------------gac---------------------tta---atctccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,10rev,12rev",6,2,4
"FJ670526",">Ref.24_BG.ES.08.X2456_2.FJ670526","Ref","24_BG","ES","08","X2456_2","FJ670526",104,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcagcgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattaggttaaggccagggggaaagaaaaaatatagaatgaaacatctcgtatgggcaagcagggagctggacagatttgcactcaaccctggccttctagaaacagcaggaggttgtcaacaaatattgaaccaactgcaaccagctctccaaacagggacagaggagattaagtcattatataatacagtagcaaccctctattgtgtacatcaaaagatagaggtaagagacaccaaagaagctctagatgaagtggaaaagttacaaaagaaaagtcagcagaaagtacaacaggcagcaacgggtgaaggaagcagcagccaagtcagccaaaattaccctatagtgcagaatgcacaagggcaaccgatacaccaggctatatcacccaggactttaaatgcatgggtaaaggtagtagaagaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacactgtggggggacatcaagcagcaatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggatgcacccacagcaggcagggcctatcccaccaggtcaaataagagagccaaggggaagcgatatagcaggaactactagtaccctacaggaacagataacatggatgaccaacaacccacctatcccagtgggagaaatttataaaagatggataatcttgggattaaataaaatagtaagaatgtatagccctgtaagcattttggatataaagcaagggccaaaagaaccctttagagactatgtagatagrttctttaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgttggtccaaaatgcgaacccagactgtaagaccatcttaagagcattaggaccaggagcttcactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttagctgaagcaatgagtcagatatcaggtgcaggggcatccataatgatgcaaaaaagcaattttaggggcccaagaagaaatattaagtgttttaactgtggcaaggaaggacacctagcaaaaaattgcagggcccctaggaaaaagggctgttggaagtgtggaaaggagggacatcaaatgaaagactgctcagagagacaggctaattttttagggaaactttggccttcccacaagggaaggccggggaactttcctcagaacaggctagagccaacagccccacctgcagagagcctcgggttcggagaggagatagccccctccccgaagcaagggcagccggagaaagacttaatctccctcaaatcactctttggcagcgacccctagtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattaggttaaggccagggggaaagaaaaaatatagaatgaaacatctcgtatgggcaagcagggagctggacagatttgcactcaaccctggccttctagaaacagcaggaggttgtcaacaaatattgaaccaactgcaaccagctctccaaacagggacagaggagattaagtcattatataatacagtagcaaccctctattgtgtacatcaaaagatagaggtaagagacaccaaagaagctctagatgaagtggaaaagttacaa------------aag---------------------aaa---------------agtcag------cagaaa---------------------------------gtacaacaggcagcaacg---------------------------------ggtgaagga------------------------------------------------------------------------------------------agcagcagccaa------------------gtcagccaaaattaccctatagtgcagaatgcacaagggcaaccgatacaccaggctatatcacccaggactttaaatgcatgggtaaaggtagtagaa---gaaaaggccttcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacactgtggggggacatcaagcagcaatgcaaatgctaaaggatactatcaatgaggaagctgcagagtgggacaggatgcacccacagcaggcagggcctatcccaccaggtcaaataagagagccaaggggaagcgatatagcaggaactactagtaccctacaggaacagataacatggatgacc---------aacaacccacctatc---ccagtgggagaaatttataaaagatggataatcttgggattaaataaaatagtaagaatgtatagccctgtaagcattttggatataaagcaagggccaaaagaaccctttagagactatgtagatagrttctttaaaactttaagagctgaacaagctacacaggaagtaaaaggctggatgacagacaccttgttggtc---caaaatgcgaacccagactgtaagaccatcttaagagcattaggaccaggagcttcactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaagcaagagttttagctgaagcaatg------------agtcagatatcaggtgca------------------ggggcatccataatgatgcaaaaa---agcaat---tttaggggc---ccaaga---agaaatattaagtgttttaactgtggcaaggaaggacacctagcaaaaaattgcagggcccctaggaaaaagggctgttggaagtgtggaaaggagggacatcaaatgaaagactgctca---------gag---agacaggctaattttttagggaaactttgg---cct---tcccacaag---------gga---aggccggggaactttcctcagaac------------------------------aggcta------gagccaacagcc---------------------------------------------------ccacctgca---gagagcctcgggttcgga---------------gaggagata---gccccctcc------------------------ccgaagcaagggcag------------------------ccggagaaa---------------------gac---------------------tta---atctccctcaaatcactctttggcagcgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,10rev,12rev",6,2,4
"EU693240",">Ref.25_cpx.CM.06.06CM_BA_040.EU693240","Ref","25_cpx","CM","06","06CM_BA_040","EU693240",105,2013,1,30,1477,1506,"atgggtgcgagagcgtcagtattaaggggg","ctctttggcagcgacccttagtcacagtaa",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagagcgtcagtattaaggggggaaaaattagataaatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagattaaaacatttagtatgggcaagcagagagctggaaagatttgcacttaaccctagccttttagaagatgcaawaggatgtcaacaaataatggracagttacaaccatctctcaacacaggatcagaagaactgagatcattattcaatacagtagcaaccctctgttgtgtacatctaagagwagatgtaaaagataccaaggaagctttagataaaatagaggagatacaaaagaagagcaaacaaaagacacagcaggaagcagctgactcaggaagtagcagcaaccaagtcagccaaaattaccccatagtgcagaatgcacaagggcagatggtacatcaggccatatcccctagaactttgaatgcatgggtaaaagtagtagaagaaaaagcattcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaatacagtggggggacatcaagcagctatgcaaatgctaaaggatacyatcaatgaggaagctgcagagtgggacagratacatccagcacaggcaggaccaatyccaccaggycagataagggagccaaggggaagtgatatagcaggaactactagtaccctrcaggaacaaataagatggatgactagcaacccacctatcccagtgggagaaatttataaaagatggataatcttgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagrgattatgtagataggttctttaaaactttgagagctgagcaagctacacaggaagtaaaaggctggatgacagacacattgttggtccaaaatgcaaacccagattgtaagatcatcttaagagggttaggaccaggagcttcactggaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagagttttagctgaggcaatgagccaggcatcaagtacagcagcagccataatgatgcagaaaggcaattttaagggccaaagaagaartattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggaaagaaggacatcagatgaaagactgcacagagagacaggctaattttttagggaaaatttggccttccaacaaagggaggccagggaactttcttcagaacaggctagagccaacagccccaccagcagagagcttcgggttcggagaggagatagccccctcccygaagcaggagtcgaaagagarggaacatcctgtggctgcttccctcaaatcactctttggcagcgacccttagtcacagtaa","atgggtgcgagagcgtcagtattaaggggggaaaaattagataaatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagattaaaacatttagtatgggcaagcagagagctggaaagatttgcacttaaccctagccttttagaagatgcaawaggatgtcaacaaataatggracagttacaaccatctctcaacacaggatcagaagaactgagatcattattcaatacagtagcaaccctctgttgtgtacatctaagagwagatgtaaaagataccaaggaagctttagataaaatagaggagatacaa------------aag---------------------aag---------------agcaaa------caaaag---------------------------------acacagcaggaagcagct---------------------------------gactcagga---------------------------------------------------------------------------------------agtagcagcaaccaa------------------gtcagccaaaattaccccatagtgcagaatgcacaagggcagatggtacatcaggccatatcccctagaactttgaatgcatgggtaaaagtagtagaa---gaaaaagcattcagtccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaatacagtggggggacatcaagcagctatgcaaatgctaaaggatacyatcaatgaggaagctgcagagtgggacagratacatccagcacaggcaggaccaatyccaccaggycagataagggagccaaggggaagtgatatagcaggaactactagtaccctrcaggaacaaataagatggatgact---------agcaacccacctatc---ccagtgggagaaatttataaaagatggataatcttgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagrgattatgtagataggttctttaaaactttgagagctgagcaagctacacaggaagtaaaaggctggatgacagacacattgttggtc---caaaatgcaaacccagattgtaagatcatcttaagagggttaggaccaggagcttcactggaagaaatgatgacagcatgtcagggagtgggaggacccagccataaagcaagagttttagctgaggcaatg------------agccaggcatcaagtaca------------------gcagcagccataatgatgcagaaa---ggcaat---tttaagggc---caaaga---agaartattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggaaagaaggacatcagatgaaagactgcaca---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaaa---------ggg---aggccagggaactttcttcagaac------------------------------aggcta------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcgga---------------gaggagata---gccccctcc------------------------cygaagcaggagtcg------------------------aaagagarg---------------------gaacat------------cct---gtggctgcttccctcaaatcactctttggcagcgacccttagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"EU697906",">Ref.25_cpx.SA.03.J11233.EU697906","Ref","25_cpx","SA","03","J11233","EU697906",106,2013,1,30,1480,1509,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcarcgacccttagtytcagtaa",1,30,1,30,1,30,1984,2013,1480,1509,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaraaaattcggttgaggccagggggaaagaaraaatataaattgaaacatatagtatgggcaagcagagagctggaaagattcgcacttaaccctggccttttagaaaatgmagaaggatgtcaacaaataatggaacagttacaatcatctcttaagacaggatcagaagaamttaaatcattatwtaatacagtagcaactctctattgtgtacatcagagaatagargtaaragacaccaaggaagctttagataaaatagaggagatacaaaataagartaagcaaaagaaacagcaggcagcaaatgacacaggaagtggcagcarccaagtcagccaaaattaycccatagtgcagaatgcacaagggcaaatggtacatcagcccatatctcctagaaccttaaatgcatgggtraaagtagtagaagaaaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaatacagtggggggacatcaggcagctatgcaaatgctaaaagatactatcaatgaggaagctgcagaatgggacagratacatccagcacaggcagggcctattccaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagtaccctacaggaacagataagatggatgacaagcaacccacctattccagtgggagaaatttataaaagatggataatyctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacatmagacaagggccaaaagaaccctttagagattatgtagatagattctttaaaactttgagagctgagcaagctacacaggaagtaaaaggctggatgacagacaccttgttggtccaaaatgcaaacccagattgcaagaccattttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttagctgaggcaatgagccaggcatcaggtgcggcagcagcagccataatgatgcagaaaggcaattttaagggcccaagaagaaatattaagtgtttcaactgtggcaaggaaggacatctagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcacggagagacaggctaattttttagggaaaatttggccttccarcaagggaaggccagggaatttccttcagaacagaccagagccaacagccccacctgcagagagcctcgggytcggggaggagatagccccctccccgaagcaagagcagagagaaaaggarctatatcccttgacttccctcaaatcactctttggcarcgacccttagtytcagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaraaaattcggttgaggccagggggaaagaaraaatataaattgaaacatatagtatgggcaagcagagagctggaaagattcgcacttaaccctggccttttagaaaatgmagaaggatgtcaacaaataatggaacagttacaatcatctcttaagacaggatcagaagaamttaaatcattatwtaatacagtagcaactctctattgtgtacatcagagaatagargtaaragacaccaaggaagctttagataaaatagaggagatacaa------------aat---------------------aag---------------artaag------caaaag---------------------------------aaacagcaggcagcaaat---------------------------------gacacagga---------------------------------------------------------------------------------------agtggcagcarccaa------------------gtcagccaaaattaycccatagtgcagaatgcacaagggcaaatggtacatcagcccatatctcctagaaccttaaatgcatgggtraaagtagtagaa---gaaaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaatacagtggggggacatcaggcagctatgcaaatgctaaaagatactatcaatgaggaagctgcagaatgggacagratacatccagcacaggcagggcctattccaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagtaccctacaggaacagataagatggatgaca---------agcaacccacctatt---ccagtgggagaaatttataaaagatggataatyctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacatmagacaagggccaaaagaaccctttagagattatgtagatagattctttaaaactttgagagctgagcaagctacacaggaagtaaaaggctggatgacagacaccttgttggtc---caaaatgcaaacccagattgcaagaccattttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttagctgaggcaatg------------agccaggcatcaggtgcg------------gca---gcagcagccataatgatgcagaaa---ggcaat---tttaagggc---ccaaga---agaaatattaagtgtttcaactgtggcaaggaaggacatctagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcacg---------gag---agacaggctaattttttagggaaaatttgg---cct---tccarcaag---------gga---aggccagggaatttccttcagaac------------------------------agacca------gagccaacagcc---------------------------------------------------ccacctgca---gagagcctcgggytcggg---------------gaggagata---gccccctcc------------------------ccgaagcaagagcag------------------------agagaaaag---------------------garctatat---------ccc---ttg---acttccctcaaatcactctttggcarcgacccttagtytcagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,11fw,12rev","1fw,11fw","4rev,12rev",4,2,2
"EU697908",">Ref.25_cpx.SA.03.J11451.EU697908","Ref","25_cpx","SA","03","J11451","EU697908",107,2013,1,30,1477,1506,"atgggtgcgagagcgtcagtattaagtgga","ctctttggcagcgacccctagtcgcagtaa",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagagcgtcagtattaagtggagggaaattagatacatgggagaaaattcggttgaggccagggggaaagaaaaaatataaactgaaacatatartatgggcaagcagagagctggaaagattcgcacttaaccctagcctyttagaaaatgcagaaggatgtcaacaaataatggaacagttacaatcarstctcaagacaggatcagaagaamttaaatcattatttaatacagtagcagtcctctattgtgtacatcwaagaatagatgtaaaagacaccaaggaagctttagataaaatagaggagatacaaaataagagtaagcaarrgaaacagcaggcaacaaatgacacaggaagtaacagcagccaagtcagccaaaattaccccatagtgcagaatgcacaagggcaaatggtacatcaggccatatcccctagaactttaaatgcatgggtaaaagtartagaagaaaaagctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacacagtgggggggcatcaagcagctatgcaaatgttaaaggatactatcaatgatgaagctgcagaatgggacaggatacatccaccacaggcagggcctattccaccaggccagataagagacccaaggggaagtgatatagcaggaaccacyagtaccctacaggaacaaataagatggatgacaagcaacccacctattccagtgggagaaatttataaaagatggataatcctaggattraataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagattatgtagacagrttctttaaaactttaagagctgagcaagctacacaggaagtaaaaaactggatgacagaaaccttgttgrtccaaaatgcaaatccagattgcaagaacatcttaagagcattaggaccaggagcytccctagargaaatgatgacagcatgtcagggagtaggaggacccagccataaagcaagagttttagctgaggcaatgagccaggcatcaggtgcagcagcagcmataatgatgcagaaaggcaattttaagggcccaaaaagaamkattaagtgtttcaactgtggcaargaaggacatctagccagaaattgcagggcccctagaaaaaggggctgttggaaatgtgggaaggagggacatcaaatgaaagactgcacrgaragacaggctaattttttagggaaaatttggccttccaacaaaggaaggccagggaatttccttcagaacagaccagagccatcagccccacctgcagagagcttcgggttcggggaggagatagccccctcccygaagcaggagccgaaggaaaaggagctatatcctttgacttccctcaaatcactctttggcagcgacccctagtcgcagtaa","atgggtgcgagagcgtcagtattaagtggagggaaattagatacatgggagaaaattcggttgaggccagggggaaagaaaaaatataaactgaaacatatartatgggcaagcagagagctggaaagattcgcacttaaccctagcctyttagaaaatgcagaaggatgtcaacaaataatggaacagttacaatcarstctcaagacaggatcagaagaamttaaatcattatttaatacagtagcagtcctctattgtgtacatcwaagaatagatgtaaaagacaccaaggaagctttagataaaatagaggagatacaa------------aat---------------------aag---------------agtaag------caarrg---------------------------------aaacagcaggcaacaaat---------------------------------gacacagga---------------------------------------------------------------------------------------agtaacagcagccaa------------------gtcagccaaaattaccccatagtgcagaatgcacaagggcaaatggtacatcaggccatatcccctagaactttaaatgcatgggtaaaagtartagaa---gaaaaagctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacacagtgggggggcatcaagcagctatgcaaatgttaaaggatactatcaatgatgaagctgcagaatgggacaggatacatccaccacaggcagggcctattccaccaggccagataagagacccaaggggaagtgatatagcaggaaccacyagtaccctacaggaacaaataagatggatgaca---------agcaacccacctatt---ccagtgggagaaatttataaaagatggataatcctaggattraataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagattatgtagacagrttctttaaaactttaagagctgagcaagctacacaggaagtaaaaaactggatgacagaaaccttgttgrtc---caaaatgcaaatccagattgcaagaacatcttaagagcattaggaccaggagcytccctagargaaatgatgacagcatgtcagggagtaggaggacccagccataaagcaagagttttagctgaggcaatg------------agccaggcatcaggtgca------------------gcagcagcmataatgatgcagaaa---ggcaat---tttaagggc---ccaaaa---agaamkattaagtgtttcaactgtggcaargaaggacatctagccagaaattgcagggcccctagaaaaaggggctgttggaaatgtgggaaggagggacatcaaatgaaagactgcacr---------gar---agacaggctaattttttagggaaaatttgg---cct---tccaacaaa---------gga---aggccagggaatttccttcagaac------------------------------agacca------gagccatcagcc---------------------------------------------------ccacctgca---gagagcttcgggttcggg---------------gaggagata---gccccctcc------------------------cygaagcaggagccg------------------------aaggaaaag---------------------gagctatat---------cct---ttg---acttccctcaaatcactctttggcagcgacccctagtcgcagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"FM877780",">Ref.26_AU.CD.02.02CD_KS069.FM877780","Ref","26_AU","CD","02","02CD_KS069","FM877780",108,2013,1,30,1456,1485,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgaccccttgtcacaataa",1,30,1,30,1,30,1984,2013,1456,1485,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagaaaattaagttacggccagggggaaagaaaaaatataagatgaaacatttagtatgggcaagcagggagttggaaagattcgcacttaacccagaccttttagaaacatcagaaggatgtctacaaatattagcacagatacaaccagcaattaagacaggaacagaagagcttaaatcattatataatgcagtagcagtcctctgctgtgtgcatcaaaaaataaatgtaaaagacaccaaggaagctttggatgaaatagagaaaatacaaaacaaaaagacacagcaggcagcagctgacacaggaaacaacaatcaggtcagtcggaattatcctatagtgcaaaatgcacaagggcagatggtgcaccagtccatatcacccaggactttgaatgcatgggtaaaagtaatagaggaaaaggcattcagcccagaagtaatacccatgtttacagcattatcagagggagccaccccacaagatttaaatactatgctgaacacagtggggggacatcaagcagctatgcaaatgttaaaagataccatcaatgacgaagctgcagaatgggacaggttacatccagtacatgcagggcccattgcaccaggccagatgagggaaccaaggggaagtgatatagcaggaacaaccagtacccttcaggaacaaataggatggatgaccaacaatccacctatcccagtgggagaaatttataaaaggtggataatcctgggattaaataaaatagtaaggatgtatagccctgttagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagatagattctttaaaactcttagagctgagcaatgtacacaggatgtaaaaaactggatgacagacaccttgttggtccaaaatgcaaacccagattgtaagaccattttaagaggattaggacaaggggcttcgctggaagaaatgatgacagcgtgtcagggagtgggaggacccggccataaagcaagagttttggctgaggcaatgagccaagtacaatcacaagctacaagcataatggtgcagaggggcaattttaaaggtcagaaaagaataaaatgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccccagaaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggaaaatctggccttccaacaaagggaggccaggaaactttccccagaacaggatagagccaacagccccaccagcagagaactttgggatgggggaagggataaccccctccccgaagcaggagctgaaagagagggaacctttagtttccctcaaatcactctttggcaacgaccccttgtcacaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagaaaattaagttacggccagggggaaagaaaaaatataagatgaaacatttagtatgggcaagcagggagttggaaagattcgcacttaacccagaccttttagaaacatcagaaggatgtctacaaatattagcacagatacaaccagcaattaagacaggaacagaagagcttaaatcattatataatgcagtagcagtcctctgctgtgtgcatcaaaaaataaatgtaaaagacaccaaggaagctttggatgaaatagagaaaatacaa------------aac---------------------------------------------------aaaaag---------------------------------acacagcaggcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------aacaacaatcag------------------gtcagtcggaattatcctatagtgcaaaatgcacaagggcagatggtgcaccagtccatatcacccaggactttgaatgcatgggtaaaagtaatagag---gaaaaggcattcagcccagaagtaatacccatgtttacagcattatcagagggagccaccccacaagatttaaatactatgctgaacacagtggggggacatcaagcagctatgcaaatgttaaaagataccatcaatgacgaagctgcagaatgggacaggttacatccagtacatgcagggcccattgcaccaggccagatgagggaaccaaggggaagtgatatagcaggaacaaccagtacccttcaggaacaaataggatggatgacc---------aacaatccacctatc---ccagtgggagaaatttataaaaggtggataatcctgggattaaataaaatagtaaggatgtatagccctgttagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagatagattctttaaaactcttagagctgagcaatgtacacaggatgtaaaaaactggatgacagacaccttgttggtc---caaaatgcaaacccagattgtaagaccattttaagaggattaggacaaggggcttcgctggaagaaatgatgacagcgtgtcagggagtgggaggacccggccataaagcaagagttttggctgaggcaatg------------agccaagtacaatcacaa------------------gctacaagcataatggtgcagagg---ggcaat---tttaaaggt---cagaaa---aga---ataaaatgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccccagaaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatctgg---cct---tccaacaaa---------ggg---aggccaggaaactttccccagaac------------------------------aggata------gagccaacagcc---------------------------------------------------ccaccagca---gagaactttgggatgggg---------------gaagggata---accccctcc------------------------ccgaagcaggagctg------------------------aaagagagg---------------------gaa---------------cct---tta---gtttccctcaaatcactctttggcaacgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,3fw,4rev,10rev,11fw,12rev","1fw,3fw,11fw","4rev,10rev,12rev",6,3,3
"FM877782",">Ref.26_AU.CD.02.02CD_MBTB047.FM877782","Ref","26_AU","CD","02","02CD_MBTB047","FM877782",109,2013,1,30,1459,1488,"atgggtgcgagagcgtcaatattaagcgga","ctctttggcaacgacccctcgtcacaataa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcaatattaagcggaggacaattagatagatgggagaaaattaggctaagaccagggggaaagaaaaaatatagactaaaacatttagtatgggcaagcagggagctggaaaaattttcaattaaccctggccttttagaaacagcagaaggatgtcaacaaatactagaacagttacagccagctgttaagacaggatcagaagagcttaaatcattatttaatacagtagcagtcctctactgtgtacatcaaaggataaatgtaaaagacaccaaggaagctttggataaagtagaggaaatgcaaaacaaaaaagcacagcaggcagcagataacacaggaagcagcagtaaggtcagtcaaaattatcctatagtgcaaaatgcacaaggacagatggtacatcaggccctatcacctaggactttgaatgcatgggtaaaggtggtagaggaaaaggcctttagcccagaagtaatacccatgtttgtggcattgtcagaaggagccaccccacaagatttaaatactatgatgaacacagtggggggacatcaagcagctatgcaaatgataaaagataccatcaatgaagaagctgcagaatgggacagattacatccagtacaggcagggcccattgcaccaggccagataagggaaccaaggggaagtgacatagcaggaactaccagtacccttcaggaacaaatagcatggatgaccagcaacccacctatcccagtgggagaaatttataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaaccctttagagactatgtagatagattctttaaaactcttagagctgagcaagctacacaggaagtaaaagcctggatgacagacactctgttggtccaaaatgcgaatccagattgtaagaccattttaagaggattaggacaaggggcttcattggaagaaatgatgacagcatgtcagggagtgggaggacccggccataaggcaagggttttggctgaagcaatgagccaagtgcaaaatgcaaacatattggtgcagggaggcaattttaaaggccagagaggaaaaattattaaatgtttcaactgtggcaaagaaggacacctagccagaaattgcaaggcccccagaaagaagggctgttggaaatgtggaagggaaggacaccaaatgaaagattgcactgagagacaggctaattttttagggagattctggcctcccaacaaggggaggccagggaattttcctcagagcaggttagtgccaacagctccaccagcagagaacttgggaatggaagaggggacaaccccctccccgaaacagaaagagggagaacagtctcctcctctaatttccctcaaatcactctttggcaacgacccctcgtcacaataa","atgggtgcgagagcgtcaatattaagcggaggacaattagatagatgggagaaaattaggctaagaccagggggaaagaaaaaatatagactaaaacatttagtatgggcaagcagggagctggaaaaattttcaattaaccctggccttttagaaacagcagaaggatgtcaacaaatactagaacagttacagccagctgttaagacaggatcagaagagcttaaatcattatttaatacagtagcagtcctctactgtgtacatcaaaggataaatgtaaaagacaccaaggaagctttggataaagtagaggaaatgcaa------------aac---------------------------------------------------aaaaaa---------------------------------gcacagcaggcagcagat---------------------------------aacacagga------------------------------------------------------------------------------------------agcagcagtaag------------------gtcagtcaaaattatcctatagtgcaaaatgcacaaggacagatggtacatcaggccctatcacctaggactttgaatgcatgggtaaaggtggtagag---gaaaaggcctttagcccagaagtaatacccatgtttgtggcattgtcagaaggagccaccccacaagatttaaatactatgatgaacacagtggggggacatcaagcagctatgcaaatgataaaagataccatcaatgaagaagctgcagaatgggacagattacatccagtacaggcagggcccattgcaccaggccagataagggaaccaaggggaagtgacatagcaggaactaccagtacccttcaggaacaaatagcatggatgacc---------agcaacccacctatc---ccagtgggagaaatttataaaagatggataattctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaaccctttagagactatgtagatagattctttaaaactcttagagctgagcaagctacacaggaagtaaaagcctggatgacagacactctgttggtc---caaaatgcgaatccagattgtaagaccattttaagaggattaggacaaggggcttcattggaagaaatgatgacagcatgtcagggagtgggaggacccggccataaggcaagggttttggctgaagcaatg------------agccaagtgcaa------------------------aatgcaaacatattggtgcaggga---ggcaat---tttaaaggc---cagagaggaaaaattattaaatgtttcaactgtggcaaagaaggacacctagccagaaattgcaaggcccccagaaagaagggctgttggaaatgtggaagggaaggacaccaaatgaaagattgcact---------gag---agacaggctaattttttagggagattctgg---cct---cccaacaag---------ggg---aggccagggaattttcctcagagc------------------------------aggtta------gtgccaacagct---------------------------------------------------ccaccagca---gagaacttgggaatggaa---------------gaggggaca---accccctcc------------------------ccgaaacag------------------------------aaagaggga---------------------gaacagtct------cctcct---cta---atttccctcaaatcactctttggcaacgacccctcgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"FM877777",">Ref.26_AU.CD.97.97CD_KTB119.FM877777","Ref","26_AU","CD","97","97CD_KTB119","FM877777",110,2013,1,30,1474,1503,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgaccccttgtcacaataa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattaggttaaggccagggggaaagaaaaaatataggataaaacatttagtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagaaacaggggaaggatgtcaacaaataatggaacagttacaaccagctcttaagacaggaacagaggagattaaatcattatttaatgcagtagcagtcctcttctgtgtacatcaaaggatagaggtaaaagacaccaaggaagctttggataaagtagaggaaatacaaaacaaaaagaaacagcaggtagcagctggcacaggaaacaacagcacaggaaacaacagtaaggtcagtcaaaattatcctatagtgcaaaatgcacaagggcagatgatacaccaggccatatcacctaggactttaaatgcgtgggtaaaagtgatagaagaaaaggccttcagcccagaagtaatacccatgtttacagcattagcagaaggagccaccccacatgatttaaatactatgctgaacacagtggggggacatcaagcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagagtgggataggctacatccagtacatgcagggcccattccaccaggccagatgagggaaccaaggggaagtgacatagcaggaactaccagtacccttcaggaacaaataggatggataaccagcaacccacctatcccagtgggagaaatttataaaaggtggataattctggggctaaataaaatagtaagaatgtatagccctgttagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagatagattttttaaaactcttagagctgagcaagctacacaggatgtaaaaaactggatgacagacaccttgttggtccaaaatgcgaatccagattgtaagatcattttaagaggattaggacaaggggcttcattggaagaaatgatgacagcgtgtcagggagtgggaggacccggccataaagcaagagtgttggctgaagcaatgagccaagcacaaaatacaaacataatgatgcagaggggcaattttagaggacagaaaagaacaattaaatgtttcaactgtggcaaggaaggacacctagccagaaattgcagggctcctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggaaaatctggccttcccacaaggggaggccagggaactttcctcagaacaggttagagccaacagccccaccagcagacagctttgggacgggggaagggataaccccctccccgaagcaggagatgaaagagagggaacagtctcctctagtttccctcaaatcactctttggcaacgaccccttgtcacaataa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattaggttaaggccagggggaaagaaaaaatataggataaaacatttagtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagaaacaggggaaggatgtcaacaaataatggaacagttacaaccagctcttaagacaggaacagaggagattaaatcattatttaatgcagtagcagtcctcttctgtgtacatcaaaggatagaggtaaaagacaccaaggaagctttggataaagtagaggaaatacaa------------aac---------------------------------------------------aaaaag---------------------------------aaacagcaggtagcagct---------------------------------ggcacaggaaacaacagcacagga---------------------------------------------------------------------------aacaacagtaag------------------gtcagtcaaaattatcctatagtgcaaaatgcacaagggcagatgatacaccaggccatatcacctaggactttaaatgcgtgggtaaaagtgatagaa---gaaaaggccttcagcccagaagtaatacccatgtttacagcattagcagaaggagccaccccacatgatttaaatactatgctgaacacagtggggggacatcaagcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagagtgggataggctacatccagtacatgcagggcccattccaccaggccagatgagggaaccaaggggaagtgacatagcaggaactaccagtacccttcaggaacaaataggatggataacc---------agcaacccacctatc---ccagtgggagaaatttataaaaggtggataattctggggctaaataaaatagtaagaatgtatagccctgttagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagatagattttttaaaactcttagagctgagcaagctacacaggatgtaaaaaactggatgacagacaccttgttggtc---caaaatgcgaatccagattgtaagatcattttaagaggattaggacaaggggcttcattggaagaaatgatgacagcgtgtcagggagtgggaggacccggccataaagcaagagtgttggctgaagcaatg------------agccaagcacaa------------------------aatacaaacataatgatgcagagg---ggcaat---tttagagga---cagaaa---agaacaattaaatgtttcaactgtggcaaggaaggacacctagccagaaattgcagggctcctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatctgg---cct---tcccacaag---------ggg---aggccagggaactttcctcagaac------------------------------aggtta------gagccaacagcc---------------------------------------------------ccaccagca---gacagctttgggacgggg---------------gaagggata---accccctcc------------------------ccgaagcaggagatg------------------------aaagagagg---------------------gaacagtct---------cct---cta---gtttccctcaaatcactctttggcaacgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,10rev,12rev",6,2,4
"AJ404325",">Ref.27_cpx.CD.97.97CDKTB49.AJ404325","Ref","27_cpx","CD","97","97CDKTB49","AJ404325",111,2013,1,30,1471,1500,"atgggtgcgagagcgtcagaattaagcggg","ctctttggcaacgaccccttgtcacagtaa",1,30,1,30,1,30,1984,2013,1471,1500,1984,2013,"atgggtgcgagagcgtcagaattaagcgggggacaattagatgcatgggagaaaattcatttaaggccagggggaaagaaacaatataggataaaacatctagtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagaaacagcagaaggctgtctagatatactaggacagctacaaccagctcttaagacaggatcagaagaactccaatcattatataatctagtagcaaccctctattgcgtacatcgaagaatagaggtaaaagacaccaaagaagctctagaggaagtggaaaagatacaaaggaacagtaagcaaaaaacacagcaggaagcaaaggacaagggaatcaacagccaagttagccaaaattatcctatagtgcaaaatgcacaagggcaaatggtacaccaagccataacacctagaaccttgaatgcatgggtaaaagtagtagaagaaaaggccttcagtccagaagtaatacccatgttttcagcactatcagagggagccaccccacaagatttaaacaccatgctaaacacagtgggggggcatcaagcagctatgcaaatgctaaaggatactattaatgaggaagctgcagagtgggataggacacatccaccacaagcagggcctgttccaccagggcagataagagacccaaggggaagtgatatagcaggaactaccagtaccctgcaggaacaaatagcatggatgactaataatccacctatcccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagtattttggacataagacaaggaccaaaagaaccctttagagattatgtagataggttctttaaaactttgagagcagagcaagcttcacaagaagtaaaaaattggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccatcttaaaagcattaggatcaggagctacactagaggaaatgatgacagcatgtcagggagtaggagggcccagccataaagcaagagttttggctgaagcaatgagccaggcctcaggtgcagcagcagccataatgatgcagaaaagcaattttaagggcccgagaaaaactattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaggggctgttggaagtgtggaaaggagggacatcaaatgaaagactgtacagagagacaggctaattttttagggaaaatttggccttccaacaaggggaggccagggaattttctccagagcaggccagagccatcagccccaccagcagagagcttcaggttcggggaggaggtgaccccctctccgaaacaggagccgaaggacaaggaagttcccttaacttccctcagatcactctttggcaacgaccccttgtcacagtaa","atgggtgcgagagcgtcagaattaagcgggggacaattagatgcatgggagaaaattcatttaaggccagggggaaagaaacaatataggataaaacatctagtatgggcaagcagggagctggaaagatttgcacttaaccctggccttttagaaacagcagaaggctgtctagatatactaggacagctacaaccagctcttaagacaggatcagaagaactccaatcattatataatctagtagcaaccctctattgcgtacatcgaagaatagaggtaaaagacaccaaagaagctctagaggaagtggaaaagatacaa------------agg---------------------aac---------------agtaag------caaaaa---------------------------------acacagcaggaagcaaag---------------------------------gacaaggga------------------------------------------------------------------------------------------atcaacagccaa------------------gttagccaaaattatcctatagtgcaaaatgcacaagggcaaatggtacaccaagccataacacctagaaccttgaatgcatgggtaaaagtagtagaa---gaaaaggccttcagtccagaagtaatacccatgttttcagcactatcagagggagccaccccacaagatttaaacaccatgctaaacacagtgggggggcatcaagcagctatgcaaatgctaaaggatactattaatgaggaagctgcagagtgggataggacacatccaccacaagcagggcctgttccaccagggcagataagagacccaaggggaagtgatatagcaggaactaccagtaccctgcaggaacaaatagcatggatgact---------aataatccacctatc---ccagtgggagaaatttataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagtattttggacataagacaaggaccaaaagaaccctttagagattatgtagataggttctttaaaactttgagagcagagcaagcttcacaagaagtaaaaaattggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccatcttaaaagcattaggatcaggagctacactagaggaaatgatgacagcatgtcagggagtaggagggcccagccataaagcaagagttttggctgaagcaatg------------agccaggcctcaggtgca------------------gcagcagccataatgatgcagaaa---agcaat---tttaagggc---ccgaga---aaaactattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaggggctgttggaagtgtggaaaggagggacatcaaatgaaagactgtaca---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccagggaattttctccagagc------------------------------aggcca------gagccatcagcc---------------------------------------------------ccaccagca---gagagcttcaggttcggg---------------gaggaggtg---accccctct------------------------ccgaaacaggagccg------------------------aaggacaag---------------------gaagtt------------ccc---tta---acttccctcagatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,3fw,4rev,7rev,10rev,11fw,12rev","1fw,3fw,11fw","2rev,4rev,7rev,10rev,12rev",8,3,5
"AM851091",">Ref.27_cpx.FR.04.04CD_FR_KZS.AM851091","Ref","27_cpx","FR","04","04CD_FR_KZS","AM851091",112,2013,1,30,1462,1491,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgaccccttgtcacagtaa",1,30,1,30,1,30,1984,2013,1462,1491,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaggaaaaaatataggatgaaacatctagtatgggcaagcagggagctggaaagattcgcaattaaccctggcctcttagaagcagcagatggctgtttagacatactgagacagctacagccagctctccagacaggatcagaagaacttaaatcattgtttaatctagtagcaaccctctattgcgtacatcaaagaatagatgtaaaagacaccaaagaagctctagaggaagtggaaaaagtacaaaagaacaggcagcaaaaaacacagcaggaagagggaagcagcagccaagccagccaaaattatcctatagtgcataatgcacaaggacaaatggtacaccaggccttatcacctagaactttgaatgcctgggtaaaagtaatagaagaaaaagcctttagtccagaagtaatacccatgttttcagcactatcagagggagccaccccacaagatttaaacaccatgctaaacacagtgggggggcatcaagcagctatgcaaatgctaaaggatactattaatgaggaagctgcagagtgggacaggctgcatccacaacaggcagggcctattgcaccaggccagatgagagaaccaaggggaagtgatatagcaggaactaccagtaccctacaggaacaaatagcgtggatgaccaataacccacccatcccagtgggggaaatttataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagtattttggacataagacaagggccaaaagaaccctttagagattatgtggataggttctttaaaactttaagggctgaacaagctacacaagaggtaaaaaattggatgacaagcaccttgttggtccaaaatgcaaatccagattgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtggggggacctagtcataaagcaagagtgttagctgaggcaatgagccaggcatcaggtgcagtaacagccataatgatgcagaaaggcaatttcaagggccagaaaagaattattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaagagagggacatcaaatgaaagactgtacagagagacaggctaattttttagggaaaatttggtctcccaacaaagggaggccagggaattttctccagaacaggccagagccaacagccccaccagcagagagcctcgggatcatggaggagatgacctcctatccgaaacaggagctgaaggacaaggaacctcctttagtttccctcaaatcactctttggcaacgaccccttgtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaggaaaaaatataggatgaaacatctagtatgggcaagcagggagctggaaagattcgcaattaaccctggcctcttagaagcagcagatggctgtttagacatactgagacagctacagccagctctccagacaggatcagaagaacttaaatcattgtttaatctagtagcaaccctctattgcgtacatcaaagaatagatgtaaaagacaccaaagaagctctagaggaagtggaaaaagtacaa------------aag---------------------aac---------------aggcag------caaaaa---------------------------------acacagcaggaa---------------------------------------gag---gga------------------------------------------------------------------------------------------agcagcagccaa------------------gccagccaaaattatcctatagtgcataatgcacaaggacaaatggtacaccaggccttatcacctagaactttgaatgcctgggtaaaagtaatagaa---gaaaaagcctttagtccagaagtaatacccatgttttcagcactatcagagggagccaccccacaagatttaaacaccatgctaaacacagtgggggggcatcaagcagctatgcaaatgctaaaggatactattaatgaggaagctgcagagtgggacaggctgcatccacaacaggcagggcctattgcaccaggccagatgagagaaccaaggggaagtgatatagcaggaactaccagtaccctacaggaacaaatagcgtggatgacc---------aataacccacccatc---ccagtgggggaaatttataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagtattttggacataagacaagggccaaaagaaccctttagagattatgtggataggttctttaaaactttaagggctgaacaagctacacaagaggtaaaaaattggatgacaagcaccttgttggtc---caaaatgcaaatccagattgtaagaccatcttaagagcattaggaccaggagctacactagaagaaatgatgacagcatgtcagggagtggggggacctagtcataaagcaagagtgttagctgaggcaatg------------agccaggcatcaggtgca------------------gtaacagccataatgatgcagaaa---ggcaat---ttcaagggc---cagaaa---agaattattaagtgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaagagagggacatcaaatgaaagactgtaca---------gag---agacaggctaattttttagggaaaatttgg---tct---cccaacaaa---------ggg---aggccagggaattttctccagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcctcgggatcatg---------------gaggagatg---acctcctat------------------------ccgaaacaggagctg------------------------aaggacaag---------------------gaacct------------cct---tta---gtttccctcaaatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,3fw,4rev,7rev,8rev,10rev,11fw,12rev","1fw,3fw,11fw","2rev,4rev,7rev,8rev,10rev,12rev",9,3,6
"DQ085872",">Ref.28_BF.BR.99.BREPM12313.DQ085872","Ref","28_BF","BR","99","BREPM12313","DQ085872",113,2013,1,30,1492,1521,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgaccccttgtcacaataa",1,30,1,30,1,30,1984,2013,1492,1521,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggagaattggatagatgggagaaaattcggttaaggccagggggaaagaaaaaatataaattgaaacatatagtatgggcaagcagagagctagaacgattcgcagttaatcctggcctattagaaacatcaggaggctgtagacaaataatagaacagctacaaccatcccttcagacaggatcagaagaacttaaatcattatttaatacaatagcagtcctctattgtgtgcatcaaaggatagatataaaagacaccaaggaagctttagataagatagaggaagagcaaaacaaaagtaagaaaaaggcacagcaagcagcagctgacacaggaagcgcaggaagcagcagccaggtcagccaaaattaccctatagtgcagaacatccaggggcaaatggtacatcaggctctatcacctagaactttaaatgcatgggtaaaagtgatagaagagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaggctgcagaatgggacagattacacccagtgcatgcaggacctatcccaccaggtcagatgagagaacctaggggaagtgatatagctggaactactagtacccttcaggaacagatacaatggatgacaagcaacccacctgtcccagtgggagagatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaatgtacacaggaagtaaagggttggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccattttaaaagcattgggacaaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaggcaagagttttggctgaggcaatgagccacgcaacaaatgcagctgtaatgatgcagaaaagtaactttaaaggccaaagaaaaattgttaaatgttttaattgtggcaaagagggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgtactgaaagacaggctaattttttagggaaaatctggccttcccacaaggggaggccagggaatttccttcagaacaggccagagcacaggccagagccaacagccccaccagcagagagcttcgggttcggagaggagacaaccccccctctgaagcaggagcagaaagacgaggggctgtatcctcccttaacttccctcaaatcactctttggcaacgaccccttgtcacaataa","atgggtgcgagagcgtcagtattaagcgggggagaattggatagatgggagaaaattcggttaaggccagggggaaagaaaaaatataaattgaaacatatagtatgggcaagcagagagctagaacgattcgcagttaatcctggcctattagaaacatcaggaggctgtagacaaataatagaacagctacaaccatcccttcagacaggatcagaagaacttaaatcattatttaatacaatagcagtcctctattgtgtgcatcaaaggatagatataaaagacaccaaggaagctttagataagatagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaaag---------------------------------gcacagcaagcagcagct---------------------------------gacacagga------------------------------------------------------------------------------agcgcagga---agcagcagccag------------------gtcagccaaaattaccctatagtgcagaacatccaggggcaaatggtacatcaggctctatcacctagaactttaaatgcatgggtaaaagtgatagaa---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaggctgcagaatgggacagattacacccagtgcatgcaggacctatcccaccaggtcagatgagagaacctaggggaagtgatatagctggaactactagtacccttcaggaacagatacaatggatgaca---------agcaacccacctgtc---ccagtgggagagatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaatgtacacaggaagtaaagggttggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccattttaaaagcattgggacaaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacccagccataaggcaagagttttggctgaggcaatg------------agccacgcaaca------------------------aatgcagctgtaatgatgcagaaa---agtaac---tttaaaggc---caaaga---aaaattgttaaatgttttaattgtggcaaagagggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgtact---------gaa---agacaggctaattttttagggaaaatctgg---cct---tcccacaag---------ggg---aggccagggaatttccttcagaacaggcca------------------gagcacaggcca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcgga---------------gaggagaca---accccccct------------------------ctgaagcaggagcag------------------------aaagacgag---------------------gggctgtat------cctccc---tta---acttccctcaaatcactctttggcaacgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"DQ085873",">Ref.28_BF.BR.99.BREPM12609.DQ085873","Ref","28_BF","BR","99","BREPM12609","DQ085873",114,2013,1,30,1471,1500,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccctagtcacaataa",1,30,1,30,1,30,1984,2013,1471,1500,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggtgaattggatagatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagattaaaacatatagtatgggcaagcagggagctagaacgtttcgcagttaatcctggcctcttagaaacatcagaaggctgtagacaaataataggacagctacagccatccctacagacaggatcagaagaacttagatcattatacaatacagtagcagtcctctattgtgtgcaccaaaagatagagataaaagacaccaaggaagctttagacaagatagaggaggagcaaaacaaaagtaagaaaaaggcacagcaagcagcagctgacgcaggaaacagcagccaagtcagccaaaattaccctatagtgcagaacctccaggggcaaatggtacatcaggccctgtcacctagaactttaaatgcatgggtaaaggtgatagaagagaaggcttttagcccagaggtaatacccatgttttcagcactatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtacatgcaggacctatcccaccaggtcagatgagggaacctaggggaagtgatatagctggaaccactagtaaccttcaggaacaaatagcatggatgacaagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaaggatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagataggttctttaaaaccctaagagctgagcaatgtacacaggaagtaaaaggttggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagagttttggctgaggcaatgagccaagcaacaaatacaactgtaatgatgcagagaggtaactttaagggccaaagaaaaattgttaaatgttttaattgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagattgcactgaaagacaggctaattttttagggaaaatttggccttcccacaaggggaggcccggaaatttccttcagaacaggccagagccaacagccccgccagcagagagcttcaggttcggagaggagacaaccccctctccgaagcaggagcagaaagaggagggactgtaccctcccttagcctccctcaaatcactctttggcaacgacccctagtcacaataa","atgggtgcgagagcgtcagtattaagcgggggtgaattggatagatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagattaaaacatatagtatgggcaagcagggagctagaacgtttcgcagttaatcctggcctcttagaaacatcagaaggctgtagacaaataataggacagctacagccatccctacagacaggatcagaagaacttagatcattatacaatacagtagcagtcctctattgtgtgcaccaaaagatagagataaaagacaccaaggaagctttagacaagatagaggaggagcaa------------aac---------------------aaa---------------agtaag------aaaaag---------------------------------gcacagcaagcagcagct---------------------------------gacgcagga------------------------------------------------------------------------------------------aacagcagccaa------------------gtcagccaaaattaccctatagtgcagaacctccaggggcaaatggtacatcaggccctgtcacctagaactttaaatgcatgggtaaaggtgatagaa---gagaaggcttttagcccagaggtaatacccatgttttcagcactatcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtacatgcaggacctatcccaccaggtcagatgagggaacctaggggaagtgatatagctggaaccactagtaaccttcaggaacaaatagcatggatgaca---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaaggatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagataggttctttaaaaccctaagagctgagcaatgtacacaggaagtaaaaggttggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagagttttggctgaggcaatg------------agccaagcaaca------------------------aatacaactgtaatgatgcagaga---ggtaac---tttaagggc---caaaga---aaaattgttaaatgttttaattgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagattgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggcccggaaatttccttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccgccagca---gagagcttcaggttcgga---------------gaggagaca---accccctct------------------------ccgaagcaggagcag------------------------aaagaggag---------------------ggactgtac------cctccc---tta---gcctccctcaaatcactctttggcaacgacccctagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"DQ085874",">Ref.28_BF.BR.99.BREPM12817.DQ085874","Ref","28_BF","BR","99","BREPM12817","DQ085874",115,2013,1,30,1471,1500,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgaccaatagtcacagtaa",1,30,1,30,1,30,1984,2013,1471,1500,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggagaattagatagatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagattaaaacatgtagtatgggcaagcagggagctagaacgattcgcagttaatcctggccttttagagacatcagaaggctgtagacaaatactggaacagctacaaccatcccttaagacaggatcagaagaacttaaatcattatttaatacagtagcagtcctctattgtgtgcatcaaaagatagaggtaaaagataccaaagaagctttagataagatagaggaagagcaaaacaaaagtaagaaaaaggcacagcaagcagcagctggcacaggaaacagcaaccaggccagccaaaattaccctatagtgcagaaccttcaggggcaaatggtacatcaacccctatcacctagaactttaaatgcatgggtaaaggtggtagaagagaagggttttaacccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcaggacctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaacaactagtaaccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaactacactagtaggaatgtatagccctgtcagcattttggacataaaacaagggccaaaagacctttttagagactatgtagaccggttctttaaaaccctaagacttgagcaatgtacacaggaagtaaaaggttggatgacagacaccttgttggttccaaatgcgaaccccgattgtaagacctttttaaaagctttgggcccagggccttcacttgaagaactgacgacccctggtccgggagtgggaggacctagccataaggcaagagttttggctgaggcaatgagccaaacaacaagtgcagctgtaatgatgcagaaaagtaactttaagggccaaagaagaattgttaaatgttttaattgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggaaggacatcaaatgaaagactgcactgaaagacaggctaattttttagggagaatttggccttcccacaagggaaggcccgggaatttccttcagagcaggccagagccatcagccccaccagaagagagcttcaggtttggggaggagacaacaactccccctcagaagcaggagccgatagacaaggaactgtatcctttggcttccctcaaatcactctttggcaacgaccaatagtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggagaattagatagatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagattaaaacatgtagtatgggcaagcagggagctagaacgattcgcagttaatcctggccttttagagacatcagaaggctgtagacaaatactggaacagctacaaccatcccttaagacaggatcagaagaacttaaatcattatttaatacagtagcagtcctctattgtgtgcatcaaaagatagaggtaaaagataccaaagaagctttagataagatagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaaag---------------------------------gcacagcaagcagcagct---------------------------------ggcacagga------------------------------------------------------------------------------------------aacagcaaccag------------------gccagccaaaattaccctatagtgcagaaccttcaggggcaaatggtacatcaacccctatcacctagaactttaaatgcatgggtaaaggtggtagaa---gagaagggttttaacccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcaggacctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaacaactagtaaccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaactacactagtaggaatgtatagccctgtcagcattttggacataaaacaagggccaaaagacctttttagagactatgtagaccggttctttaaaaccctaagacttgagcaatgtacacaggaagtaaaaggttggatgacagacaccttgttggtt---ccaaatgcgaaccccgattgtaagacctttttaaaagctttgggcccagggccttcacttgaagaactgacgacccctggtccgggagtgggaggacctagccataaggcaagagttttggctgaggcaatg------------agccaaacaaca------------------------agtgcagctgtaatgatgcagaaa---agtaac---tttaagggc---caaaga---agaattgttaaatgttttaattgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggaaggacatcaaatgaaagactgcact---------gaa---agacaggctaattttttagggagaatttgg---cct---tcccacaag---------gga---aggcccgggaatttccttcagagc------------------------------aggcca------gagccatcagcc---------------------------------------------------ccaccagaa---gagagcttcaggtttggg---------------gaggagacaacaactccccct------------------------cagaagcaggagccg------------------------atagacaag---------------------gaactgtat---------cct---ttg---gcttccctcaaatcactctttggcaacgaccaatagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,7rev,10rev,11fw,12rev","1fw,11fw","7rev,10rev,12rev",5,2,3
"DQ085876",">Ref.29_BF.BR.01.BREPM16704.DQ085876","Ref","29_BF","BR","01","BREPM16704","DQ085876",116,2013,1,30,1504,1533,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccctagtcacaataa",1,30,1,30,1,30,1984,2013,1504,1533,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggagaattagatagatgggaaaaaattcggttaaggccagggggaaataaaaaatataaactaaaacatatagtatgggcaagcagggagctagagcgattcgcagttaatcctggcctattagaaacatcagaaggctgtagacaaatactatcacagctacaaccatcccttcagacaggatcagaagaacttaaatcattatttaatacagtagcagtcctctattgtgtgcatcaaaggatagatataaaagacaccaaggaagctttagaaaagatagaggaagagcaaaacaaaagtaagacaaaagcacagcaagcagcggctggcacaggaaatagcagacagcaagcagcagctggcacaggaaacagcagccaggtcagccaaaactaccctatagtgcagaacctacaggggcaaatggtacatcagcccatatcacctagaactttaaatgcatgggtaaaggtgatagaagagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcaggaccgatcccaccaggtcagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagcagagcaatgtacacaggaagtaaagggttggatgacagacaccttgttggtccaaaatgcgaacccagactgcaagaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagggttttggctgaggcaatgagccaagcaacaaatacaactgtaatgatgcagaaaagtaactttaagggccaaagaagaattgttaaatgttttaattgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagaatgcactgaaagacaggctaattttttagggaaaatttggccttcccacaaggggaggcccgggaatttccttcagaacaggccagagccatcagccccgccagcagagagcttagggtttggagaagagagaaccccctctccgaagcaggagcagaaagacgaggggaagtaccctcccttagcttccctcagatcactctttggcaacgacccctagtcacaataa","atgggtgcgagagcgtcagtattaagcgggggagaattagatagatgggaaaaaattcggttaaggccagggggaaataaaaaatataaactaaaacatatagtatgggcaagcagggagctagagcgattcgcagttaatcctggcctattagaaacatcagaaggctgtagacaaatactatcacagctacaaccatcccttcagacaggatcagaagaacttaaatcattatttaatacagtagcagtcctctattgtgtgcatcaaaggatagatataaaagacaccaaggaagctttagaaaagatagaggaagagcaa------------aac---------------------aaa---------------agtaag------acaaaa---------------------------------gcacagcaagcagcggctggcacaggaaatagcagacagcaagcagcagctggcacagga------------------------------------------------------------------------------------------aacagcagccag------------------gtcagccaaaactaccctatagtgcagaacctacaggggcaaatggtacatcagcccatatcacctagaactttaaatgcatgggtaaaggtgatagaa---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcaggaccgatcccaccaggtcagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagcagagcaatgtacacaggaagtaaagggttggatgacagacaccttgttggtc---caaaatgcgaacccagactgcaagaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagggttttggctgaggcaatg------------agccaagcaaca------------------------aatacaactgtaatgatgcagaaa---agtaac---tttaagggc---caaaga---agaattgttaaatgttttaattgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagaatgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggcccgggaatttccttcagaac------------------------------aggcca------gagccatcagcc---------------------------------------------------ccgccagca---gagagcttagggtttgga---------------gaagagaga---accccctct------------------------ccgaagcaggagcag------------------------aaagacgag---------------------gggaagtac------cctccc---tta---gcttccctcagatcactctttggcaacgacccctagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,3fw,4rev,7rev,10rev,11fw,12rev","1fw,3fw,11fw","4rev,7rev,10rev,12rev",7,3,4
"AY771590",">Ref.29_BF.BR.02.BREPM119.AY771590","Ref","29_BF","BR","02","BREPM119","AY771590",117,2013,0,0,1437,1466,"","ctctttggcaacgacccttagtcgaaataa",1,30,0,0,1,30,1984,2013,1437,1466,1984,2013,"gagaattagatagatgggaaaaaattcggctaaggccagggggaaagaaaaaatatcagttaaaacatgtagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctattagaaacatcagagggctgtagaaaaatactggaacagctacaaccatctcttcagacaggatcagaagaacttaaatcattatttaatacagtagcagttctctattgtgtgcatcaaaagatagatgtaaaagacaccaaggaagccttagagaagatagaggaagagcaaaacaaaagtaaaagtaaacagcaagcagcagctggcacaggaaatagcagccaggtcagccagaattaccctatagtgcagaacatccaggggcaaatggtgcatcaacccatagcacctagaactttgaatgcatgggtaaaagtagtagaggagaaggcttttagtccagaagtaatacccatgttttcagcactatcagaaggagccaccccacaagatttaaataccatgttaaattcagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagagtacatccagtgcatgcaggacctattccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagattatgtggacaggttctttaaaaccttaagagctgagcaagctacacaggaagtaaagaattggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccatcttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtaggaggacctagccataaggcaagggttttggctgaggcaatgagccacgcaacaaatacagctatactaatgcagaaaagtaactttaagggccaaagaagagttgttaaatgttttaattgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagagggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttcccacaaggggaggcccggaaatttccttcagaacaggccagagccaacagccccaccagcagagagcttcaggtttggagaggagataaccccctctccgaagcaggaggaaaagaacgagggactgtaccctcccttagcttccctcaaatcactctttggcaacgacccttagtcgaaataa","-------------------------------gagaattagatagatgggaaaaaattcggctaaggccagggggaaagaaaaaatatcagttaaaacatgtagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctattagaaacatcagagggctgtagaaaaatactggaacagctacaaccatctcttcagacaggatcagaagaacttaaatcattatttaatacagtagcagttctctattgtgtgcatcaaaagatagatgtaaaagacaccaaggaagccttagagaagatagaggaagagcaa------------aac---------------------aaa---------------agtaaa------agtaaa------------------------------------cagcaagcagcagct---------------------------------ggcacagga------------------------------------------------------------------------------------------aatagcagccag------------------gtcagccagaattaccctatagtgcagaacatccaggggcaaatggtgcatcaacccatagcacctagaactttgaatgcatgggtaaaagtagtagag---gagaaggcttttagtccagaagtaatacccatgttttcagcactatcagaaggagccaccccacaagatttaaataccatgttaaattcagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagagtacatccagtgcatgcaggacctattccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagattatgtggacaggttctttaaaaccttaagagctgagcaagctacacaggaagtaaagaattggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccatcttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtaggaggacctagccataaggcaagggttttggctgaggcaatg------------agccacgcaaca------------------------aatacagctatactaatgcagaaa---agtaac---tttaagggc---caaaga---agagttgttaaatgttttaattgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagagggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggcccggaaatttccttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcaggtttgga---------------gaggagata---accccctct------------------------ccgaagcaggaggaa------------------------aagaacgag---------------------ggactgtac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccttagtcgaaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","2rev,4rev,7rev,10rev,11fw,12rev","11fw","2rev,4rev,7rev,10rev,12rev",6,1,5
"DQ085871",">Ref.29_BF.BR.99.BREPM11948.DQ085871","Ref","29_BF","BR","99","BREPM11948","DQ085871",118,2013,1,30,1492,1521,"atgggcgcaagagcttcattattaagcggg","ctctttggcaacgacccatagtcacaataa",1,30,1,30,1,30,1984,2013,1492,1521,1984,2013,"atgggcgcaagagcttcattattaagcgggggaaaattggatagatgggaaaaaattcggttaaggccagggggaaagaaaaaatataatttaaaacttatagtatgggcaagcagggaactagagcgatttgcagtcaatcctggcctgttagaaacatcagaaggctgtaaacaaatactaggacagctacaaccatcccttcagacaggatcagaagagcttaaatcattatttaatacagtagcagtcctctattgtgtacatcaaaagatagatgtaaaagacaccaaggaagctttagacaagatagaggaagagcaaaacaaaagtaagaaaaaagcacagcaagcacagcaagcggcagctaacacaggaagtagcagccaagtcagccaaaattaccctatagtgcaaaatcttcaggggcaaatggtacatcaggccatatcaccgagaactttaaatgcatgggtaaaggtggtagaagagaaggcttttagcccagaagtaatacccatgtttacagcactatcagaaggggccaccccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagagtacatccagtgcatgcaggacctatcccgccaggccaaatgagggaacctaggggaagtgatatagcgggaactactagtacccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagacatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctaccagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaatgtacacaggaagtaaaaggttggatgacagacaccttgttggtccaaaatgcgaacccagattgtaggaccattttaaaagcattggggccagggtctacattagaagaaatgatgacagcatgtcagggagtgggaggaccgagtcataaggcaagaattttggctgaggcaatgagccaagcaacaggtgcagctataatgatgcagaaaagtaactttaagggccaaagaaaaattgttaaatgctttaattgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaagtgtggaagagaaggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggcctcccaacaaggggaggcctgggaatttccttcagaacaggacagagaacaggacagagccaacagccccgccagcagagagcttcgggttcggagaggagacaaccccctctccgaagcaggagcagaaagacgaggggaagtacccttccttaacttccctcaaatcactctttggcaacgacccatagtcacaataa","atgggcgcaagagcttcattattaagcgggggaaaattggatagatgggaaaaaattcggttaaggccagggggaaagaaaaaatataatttaaaacttatagtatgggcaagcagggaactagagcgatttgcagtcaatcctggcctgttagaaacatcagaaggctgtaaacaaatactaggacagctacaaccatcccttcagacaggatcagaagagcttaaatcattatttaatacagtagcagtcctctattgtgtacatcaaaagatagatgtaaaagacaccaaggaagctttagacaagatagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaaaa------------------gcacagcaa------gcacagcaagcggcagct---------------------------------aacacagga------------------------------------------------------------------------------------------agtagcagccaa------------------gtcagccaaaattaccctatagtgcaaaatcttcaggggcaaatggtacatcaggccatatcaccgagaactttaaatgcatgggtaaaggtggtagaa---gagaaggcttttagcccagaagtaatacccatgtttacagcactatcagaaggggccaccccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagagtacatccagtgcatgcaggacctatcccgccaggccaaatgagggaacctaggggaagtgatatagcgggaactactagtacccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagacatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctaccagcattttggacataaaacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaatgtacacaggaagtaaaaggttggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaggaccattttaaaagcattggggccagggtctacattagaagaaatgatgacagcatgtcagggagtgggaggaccgagtcataaggcaagaattttggctgaggcaatg------------agccaagcaaca------------------------ggtgcagctataatgatgcagaaa---agtaac---tttaagggc---caaaga---aaaattgttaaatgctttaattgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaagtgtggaagagaaggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---cccaacaag---------ggg---aggcctgggaatttccttcagaacaggaca------------------gagaacaggaca------gagccaacagcc---------------------------------------------------ccgccagca---gagagcttcgggttcgga---------------gaggagaca---accccctct------------------------ccgaagcaggagcag------------------------aaagacgag---------------------gggaagtac------ccttcc---tta---acttccctcaaatcactctttggcaacgacccatagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,11fw,12rev","1fw,11fw","4rev,7rev,12rev",5,2,3
"EF091932",">Ref.31_BC.BR.02.110PA.EF091932","Ref","31_BC","BR","02","110PA","EF091932",119,2013,1,30,1453,1482,"atgggtgcgagagcgtcaatattaagaggc","ctctttggcaacgaccccttgtcacagtaa",1,30,1,30,1,30,1984,2013,1453,1482,1984,2013,"atgggtgcgagagcgtcaatattaagaggcggaaaattagatacttgggaaaaaattaagttaaagccagggggaaagaaacaatatatgatgaaacacctagtctgggcaagcagggagctggagagatttgcacttgaccctggccttttagagacatcagcaggctgtaaacaaataatgaatcagatacaaccagctcttcagacagggacaaaggaacttatatcactatataatacagtagcaactctctattgtgtacatgaaaacatagaggtacgaaacaccaaggaagccttagacaaaataaaggaagaacaaaacaaaattcagcaaaaaacacagcaggcagaagcagctgacaaaggaaaggtcagtcaaaattatcctatagtacagaatctccaaggccaaatggtacaccaggccatatcacctagaactttgaatgcgtgggtaaaggtaatagaggagaaggctttcagcccagaggtaatacccatgtttacagcattatcagagggagccaccccacaagatttaaacaccatgttaaatacagtggggggacaccaagcagccatgcaaatgttaaaagataccatcaatgaggaggctgcagaatgggatagagtacatccagtgcaggcagggcctatcgcaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactaccagtacccttcaggaacaaataacatggatgacaggtaacccacctgtcccagtaggggagatctataaaagatggataattctggggttaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagacaggttctttagaacattaagagcagaacaagctacccaagatgtgaagaattggatgacagataccttgttagtccaaaatgcgaacccagattgtaagaccattttaagagcattagggccaggggcttcattagaagaaatgatgacagcatgtcagggagtgggaggacctggccacaaagcaagagtgttggctgaggcaatgagccaagtaaacaatacaaacataatgatgcagagaagcaattttaaaggccctaaaagacctattaaatgcttcaactgtggcaaggaagggcacatagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaagaaggacaccaaatgaaagaatgtactgagaggcaggccaattttttagggaaaatttggccttcccacaaggggaggccaggraatttcctccagagcagaccagagccaacagccccaccagcggagagcttcaggttcgaggagacaaccccctctccgaagcaggagcagaaggacagggaacccttaacttccctcaaatcactctttggcaacgaccccttgtcacagtaa","atgggtgcgagagcgtcaatattaagaggcggaaaattagatacttgggaaaaaattaagttaaagccagggggaaagaaacaatatatgatgaaacacctagtctgggcaagcagggagctggagagatttgcacttgaccctggccttttagagacatcagcaggctgtaaacaaataatgaatcagatacaaccagctcttcagacagggacaaaggaacttatatcactatataatacagtagcaactctctattgtgtacatgaaaacatagaggtacgaaacaccaaggaagccttagacaaaataaaggaagaacaa------------aac---------------------aaa---------------attcag------caaaaa---------------------------------acacagcaggcagaagca------------------------------gctgacaaagga---------------------------------------------------------------------------------------------------aag------------------gtcagtcaaaattatcctatagtacagaatctccaaggccaaatggtacaccaggccatatcacctagaactttgaatgcgtgggtaaaggtaatagag---gagaaggctttcagcccagaggtaatacccatgtttacagcattatcagagggagccaccccacaagatttaaacaccatgttaaatacagtggggggacaccaagcagccatgcaaatgttaaaagataccatcaatgaggaggctgcagaatgggatagagtacatccagtgcaggcagggcctatcgcaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactaccagtacccttcaggaacaaataacatggatgaca---------ggtaacccacctgtc---ccagtaggggagatctataaaagatggataattctggggttaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagacaggttctttagaacattaagagcagaacaagctacccaagatgtgaagaattggatgacagataccttgttagtc---caaaatgcgaacccagattgtaagaccattttaagagcattagggccaggggcttcattagaagaaatgatgacagcatgtcagggagtgggaggacctggccacaaagcaagagtgttggctgaggcaatg------------agccaagtaaac------------------------aatacaaacataatgatgcagaga---agcaat---tttaaaggc---cctaaa---agacctattaaatgcttcaactgtggcaaggaagggcacatagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaagaaggacaccaaatgaaagaatgtact---------gag---aggcaggccaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggccaggraatttcctccagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagcg---gagagcttcaggttcgag---------------gag---aca---accccctct------------------------ccgaagcaggagcag------------------------aaggacagg---------------------gaa---------------ccc---tta---acttccctcaaatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"AY727526",">Ref.31_BC.BR.04.04BR137.AY727526","Ref","31_BC","BR","04","04BR137","AY727526",120,2013,1,30,1486,1515,"atgggtgcgagagcgtcaatattaagaggc","ctctttggcagcgaccccttgtcacaataa",1,30,1,30,1,30,1984,2013,1486,1515,1984,2013,"atgggtgcgagagcgtcaatattaagaggcgaaaaattagataattgggaaagaattaggttaaagccagggggaaagaaaaaatatatgttgaaacacctagtctgggcaagcagggagctggaaagatttgcacttgaccctggccttttagagacatcatcaggctgtaaacaaataatgaaccaaatacaaccagctcttcagacaggaacaaaggaacttatatcattatataatacagttgcagttctctattgtgtacatgaaaaaatagaggtacgagacaccaaggaggccttagacaaagtaaaggcagaacaaaacaaaagtcagcaaaaaacacagcaggcagaagcggctgacaaaggaaaggtcagtcaaaattatcctatagtgcagaatatccaagggcagatggtacaccagcccatatcagctagaactttgaatgcatgggtaaaggtagtagaggagaaggctttcagcccagaggtgatacccatgttttcagcattatcagagggagccacccccacagatttaaacaccatgctaaatacagtggggggacaccaagcagccatgcaaatgttaaaagataccatcaatgaggaggctgcagaatgggataggttacatccagtgcatgcagggcctgtcgcaccaggccaaatgagagaaccaaggggaagtgacatagcaggatctaccagtacccttcaggaacaaatagcatggatgacaagtaacccacctgttccagtaggggacatctataaaagatggataattctggggttaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagcagaacaaggttcccaagaggtaaaaaattggatgacagataccttgttggtccaaaatgcgaacccagattgtaagaccattttaagagcattagggccaggggcttcattagaagaaatgatgacagcatgtcagggagtgggaggacctggccacaaagcaagagtgttggctgaggcaatgagccaagtaaacaattcaaacgtaatgatgcagagaagcaattttaagggccctagaagaaatattaaatgcttcaactgtggcaaggaagggcacttagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtactgagaggcaggctaattttttagggaaaatttggccttcccacaaggggaggccaggaaacttcctccagagcagaccagagcctacacagagcagactagagccaacagccccaccagaagagagcttcaggtttggggaagagacagcaactccctctcggaagcaggagccgacagacaaggaactgtctcccttagcttccctcagatcactctttggcagcgaccccttgtcacaataa","atgggtgcgagagcgtcaatattaagaggcgaaaaattagataattgggaaagaattaggttaaagccagggggaaagaaaaaatatatgttgaaacacctagtctgggcaagcagggagctggaaagatttgcacttgaccctggccttttagagacatcatcaggctgtaaacaaataatgaaccaaatacaaccagctcttcagacaggaacaaaggaacttatatcattatataatacagttgcagttctctattgtgtacatgaaaaaatagaggtacgagacaccaaggaggccttagacaaagtaaaggcagaacaa------------aac---------------------aaa---------------agtcag------caaaaa---------------------------------acacagcaggcagaagcg------------------------------gctgacaaagga---------------------------------------------------------------------------------------------------aag------------------gtcagtcaaaattatcctatagtgcagaatatccaagggcagatggtacaccagcccatatcagctagaactttgaatgcatgggtaaaggtagtagag---gagaaggctttcagcccagaggtgatacccatgttttcagcattatcagagggagccacccccacagatttaaacaccatgctaaatacagtggggggacaccaagcagccatgcaaatgttaaaagataccatcaatgaggaggctgcagaatgggataggttacatccagtgcatgcagggcctgtcgcaccaggccaaatgagagaaccaaggggaagtgacatagcaggatctaccagtacccttcaggaacaaatagcatggatgaca---------agtaacccacctgtt---ccagtaggggacatctataaaagatggataattctggggttaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagcagaacaaggttcccaagaggtaaaaaattggatgacagataccttgttggtc---caaaatgcgaacccagattgtaagaccattttaagagcattagggccaggggcttcattagaagaaatgatgacagcatgtcagggagtgggaggacctggccacaaagcaagagtgttggctgaggcaatg------------agccaagtaaac------------------------aattcaaacgtaatgatgcagaga---agcaat---tttaagggc---cctaga---agaaatattaaatgcttcaactgtggcaaggaagggcacttagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtact---------gag---aggcaggctaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggccaggaaacttcctccagagcagaccagag---------cctacacagagcagacta------gagccaacagcc---------------------------------------------------ccaccagaa---gagagcttcaggtttggg---------------gaagagacagcaactccctct------------------------cggaagcaggagccg------------------------acagacaag---------------------gaactgtct---------ccc---tta---gcttccctcagatcactctttggcagcgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"AY727527",">Ref.31_BC.BR.04.04BR142.AY727527","Ref","31_BC","BR","04","04BR142","AY727527",121,2013,1,30,1489,1518,"atgggtgcgagagcgtcaatattacgaggc","ctctttggcagcgaccccttgtcacaataa",1,30,1,30,1,30,1984,2013,1489,1518,1984,2013,"atgggtgcgagagcgtcaatattacgaggcgaaaaattagatacttgggaaagaattaggttaaggccagggggaaagaaacaatatatgatgaaacacttagtctgggcaagcagggagctggaaagatttgcacttgaccctggccttttagaaacatcaggaggctgtaaacaaataatacaacagctacaaccagctcttaagacaggaacaaaggaacttgtatcattatataatacagttgcaaccctctattgtgtacatgaaaagatagaggtaagagacaccaaggaagcattagacaaaataaaggaagaacaaaacaaaagtcagcaaaaaacacagcaggcagaagcagcggctggcaaaggaaatgtcagtcaaaattatcctatagtgcagaatcttcaagggcaaatggtacaccagcccatagcacctagaactttgaatgcatgggtaaaggtagtagaggagaaggctttcagcccagaggtaatacccatgtttacagcattatcagaaggagccaccccacaagatttaaacaccatgttgaatacagtggggggacaccaagcagccatgcaaatgttaaaagataccatcaatgaggaggctgcagaatgggatagattacatccagtgcatgcagggcctgtcgcaccaggccaaatgagagaaccaaggggaagtgacatagcaggatctaccagtacccttcaggaacaaatagcatggatgacaagtaacccacctgtcccagtaggagacatctataaaagatggataattctggggttaaataaaatagtaagaatgtatagccctaccagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagcagaacaggctacccaagaggtaaagaattggatgacagataccttgttagtccaaaatgcaaacccagattgtaagtccattttaagagcattaggaccaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacctggccacaaagcaagagtgttggctgaggcaatgagccaagtaaacaatacaaacataatgatgcagagaagcaattttaaaggccctaaaagaactattaaatgcttcaactgtggcaaggaagggcacttagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtaataatgagaggcaggctaattttttagggagaatttggccttcccacaaggggaggccagggaatttcctccagagcagaccagagccaacagccccgccagcgagcagactagagccgacagccccgccagcagagagcttcaggttcgaggagacaaccccctctccgaagcaggagcagagagacagggaacccttaacttccctcaaatcactctttggcagcgaccccttgtcacaataa","atgggtgcgagagcgtcaatattacgaggcgaaaaattagatacttgggaaagaattaggttaaggccagggggaaagaaacaatatatgatgaaacacttagtctgggcaagcagggagctggaaagatttgcacttgaccctggccttttagaaacatcaggaggctgtaaacaaataatacaacagctacaaccagctcttaagacaggaacaaaggaacttgtatcattatataatacagttgcaaccctctattgtgtacatgaaaagatagaggtaagagacaccaaggaagcattagacaaaataaaggaagaacaa------------aac---------------------aaa---------------agtcag------caaaaa---------------------------------acacagcaggcagaagca---------------------------gcggctggcaaagga---------------------------------------------------------------------------------------------------aat------------------gtcagtcaaaattatcctatagtgcagaatcttcaagggcaaatggtacaccagcccatagcacctagaactttgaatgcatgggtaaaggtagtagag---gagaaggctttcagcccagaggtaatacccatgtttacagcattatcagaaggagccaccccacaagatttaaacaccatgttgaatacagtggggggacaccaagcagccatgcaaatgttaaaagataccatcaatgaggaggctgcagaatgggatagattacatccagtgcatgcagggcctgtcgcaccaggccaaatgagagaaccaaggggaagtgacatagcaggatctaccagtacccttcaggaacaaatagcatggatgaca---------agtaacccacctgtc---ccagtaggagacatctataaaagatggataattctggggttaaataaaatagtaagaatgtatagccctaccagcattttggacataaaacaagggccaaaggaaccctttagagactatgtagaccggttctttaaaactttaagagcagaacaggctacccaagaggtaaagaattggatgacagataccttgttagtc---caaaatgcaaacccagattgtaagtccattttaagagcattaggaccaggggctacattagaagaaatgatgacagcatgtcagggagtgggaggacctggccacaaagcaagagtgttggctgaggcaatg------------agccaagtaaac------------------------aatacaaacataatgatgcagaga---agcaat---tttaaaggc---cctaaa---agaactattaaatgcttcaactgtggcaaggaagggcacttagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgtaataat------gag---aggcaggctaattttttagggagaatttgg---cct---tcccacaag---------ggg---aggccagggaatttcctccagagc------------------------------agacca------gagccaacagccccgccagcgagcag----------------actaga---gccgacagcc--ccgccagca---gagagcttcaggttcgag---------------gag---aca---accccctct------------------------ccgaagcaggagcag------------------------agagacagg---------------------gaa---------------ccc---tta---acttccctcaaatcactctttggcagcgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,10rev,12rev",6,2,4
"AY535660",">Ref.32_06A1.EE.01.EE0369.AY535660","Ref","32_06A1","EE","01","EE0369","AY535660",122,2013,1,30,1459,1488,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgacccatagtcacagtaa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgaatgggagaaaattcggttaaggccagggggaaggaaaaaatataaattgaaacacatagtatgggcaagcagggagctggaaagattcgcgcttaaccctggccttttagaaacagcggaaggatgtcagcagatagtggaacaggtacaaccagctctcaggacagggtcagaagaacttaagtcattatttaatacagtagcaaccctctattgtgtacatcaaaggataaaagtagcagacaccaaggaagctctagataaaatagaggaaatacaaaataagagcaagcaaaaggcacagcaggcagcaactgccacaggaaacagcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatgacacaccagtccatatcacctaggactttgaatgcatgggtgaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttttcagcgttgtcagagggagccaccccacaagatttaaacatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttgaaagataccatcaatgaggaagctgctgaatgggataggttatatccaacacaggcagggccttttcaaccagggcagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaagaacaaataggatggatgacaagcaacccacctatcccagtgggagacatctataaaagatggataatcctaggattaaataagatagtaagaatgtatagcccggttagcattttagacataagacaagggccaaaagaacccttcagagactatgtagataggttctttaaaactcttagagctgagcaagctacacacgatgtaaagaactggatgacagaaaccctgctggtccaaaatgcaaatccagattgtaaaaccattttaagagcattaggaccaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacccggccataaagcaagggttttggccgaggcaatgagtcaagcacaaaatgcaaacataatgatgcagaaaagtaattttaggggaccaaaaagaattaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggacaggaaggccatcaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggccttccagcaaggggaggccagggaactttcttcagaacaggccagagccaacagccccacctgcagagagcttcaggttcgaggaggagacagcagccccctcctcgaagcaggagccgaagaaaaaggagctatatccctcagcttccctcagatcactctttggcaacgacccatagtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgaatgggagaaaattcggttaaggccagggggaaggaaaaaatataaattgaaacacatagtatgggcaagcagggagctggaaagattcgcgcttaaccctggccttttagaaacagcggaaggatgtcagcagatagtggaacaggtacaaccagctctcaggacagggtcagaagaacttaagtcattatttaatacagtagcaaccctctattgtgtacatcaaaggataaaagtagcagacaccaaggaagctctagataaaatagaggaaatacaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------gcacagcaggcagcaact---------------------------------gccacagga---------------------------------------------------------------------------------------------------aac------------------agcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatgacacaccagtccatatcacctaggactttgaatgcatgggtgaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttttcagcgttgtcagagggagccaccccacaagatttaaacatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttgaaagataccatcaatgaggaagctgctgaatgggataggttatatccaacacaggcagggccttttcaaccagggcagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------agcaacccacctatc---ccagtgggagacatctataaaagatggataatcctaggattaaataagatagtaagaatgtatagcccggttagcattttagacataagacaagggccaaaagaacccttcagagactatgtagataggttctttaaaactcttagagctgagcaagctacacacgatgtaaagaactggatgacagaaaccctgctggtc---caaaatgcaaatccagattgtaaaaccattttaagagcattaggaccaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacccggccataaagcaagggttttggccgaggcaatg------------agtcaagcacaa------------------------aatgcaaacataatgatgcagaaa---agtaat---tttagggga---ccaaaa---aga---attaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggacaggaaggccatcaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tccagcaag---------ggg---aggccagggaactttcttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccacctgca---gagagcttcaggttcgag---------------gaggagacagcagccccctcc------------------------tcgaagcaggagccg------------------------aagaaaaag---------------------gagctatat---------ccc---tca---gcttccctcagatcactctttggcaacgacccatagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"AB547464",">Ref.33_01B.ID.07.JKT194_C.AB547464","Ref","33_01B","ID","07","JKT194_C","AB547464",123,2013,1,30,1462,1491,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgaccccttgtcacaataa",1,30,1,30,1,30,1984,2013,1462,1491,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttacggccagggggaaagaaaaaatataggttgaaacatttagtatgggcaagcagagagttggaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacagtcaactctcaagacaggatcagaagaacttcaatcattatttaatacaatagtaaccctctggtgtgtacaccaaaggatagaggtaaaagacaccaaggaagctttagataaaatgaaagaagcacaaaataaaaggcagcaaaagacacagcaggcaactggcacaggaagcagcagcacagtcagccaaaatttccctatagtgcaaaatgcacaagggcaaatggtacatcagcctttatcacctagaactttaaatgcatgggtgaaagtagtagaggaaaagggttttaacccagaggtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaatatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaggaaaccatcaatgaggaagctgcagactgggatagggcacacccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgacaaacaatccacctatcccagtaggagatatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaggaacctttcagagactatgtagatagattctataaaactctcagagcagaacaagctacacaggaggtaaaatggatgacagaaaccttactagtccaaaatgcgaatccagaccgtaagtccattttaaaagcattaggaacaggagctacattggaagaaatgatgacagcatgccaaggagtgggaggacctagtcataaagcaagggttttggctgaggcaatgagccacgcacaacaagcaggcataatgatgcagagaggcaattttaagggccaaaaaagaattaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggcaggaaggacatcaaatgaaagattgtactgagagacaggctaattttttagggaagctctggccttcccacaaggggaggccagggaacttccttcaaagccgaccagagccaacagccccaccagaggagagcttcaggtttggggaaaagacaacaactccatctcagaagcaggagccgatagacaaggagctatatccttcagcctccctcaaatcactctttggcaacgaccccttgtcacaataa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttacggccagggggaaagaaaaaatataggttgaaacatttagtatgggcaagcagagagttggaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacagtcaactctcaagacaggatcagaagaacttcaatcattatttaatacaatagtaaccctctggtgtgtacaccaaaggatagaggtaaaagacaccaaggaagctttagataaaatgaaagaagcacaa------------aat---------------------aaa---------------aggcag------caaaag---------------------------------acacagcaggcaact------------------------------------ggcacagga------------------------------------------------------------------------------------------agcagcagcaca------------------gtcagccaaaatttccctatagtgcaaaatgcacaagggcaaatggtacatcagcctttatcacctagaactttaaatgcatgggtgaaagtagtagag---gaaaagggttttaacccagaggtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaatatgatgctaaatatagtggggggacaccaggcagcaatgcaaatgttaaaggaaaccatcaatgaggaagctgcagactgggatagggcacacccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------aacaatccacctatc---ccagtaggagatatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaggaacctttcagagactatgtagatagattctataaaactctcagagcagaacaagctacacaggaggtaaaa---tggatgacagaaaccttactagtc---caaaatgcgaatccagaccgtaagtccattttaaaagcattaggaacaggagctacattggaagaaatgatgacagcatgccaaggagtgggaggacctagtcataaagcaagggttttggctgaggcaatg------------agccacgcacaa------------------------caagcaggcataatgatgcagaga---ggcaat---tttaagggc---caaaaa---aga---attaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggcaggaaggacatcaaatgaaagattgtact---------gag---agacaggctaattttttagggaagctctgg---cct---tcccacaag---------ggg---aggccagggaacttccttcaaagc------------------------------cgacca------gagccaacagcc---------------------------------------------------ccaccagag---gagagcttcaggtttggg---------------gaaaagacaacaactccatct------------------------cagaagcaggagccg------------------------atagacaag---------------------gagctatat---------cct---tca---gcctccctcaaatcactctttggcaacgaccccttgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"DQ366659",">Ref.33_01B.MY.05.05MYKL007_1.DQ366659","Ref","33_01B","MY","05","05MYKL007_1","DQ366659",124,2013,1,30,1468,1497,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgacccctcgtcacaataa",1,30,1,30,1,30,1984,2013,1468,1497,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttacggccagggggaaagaaaaaatataggctaaaacatatagtatgggcaagcagagaattggacagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaactaatagaacagttacaaccaactctcaagacaggatcagaagaacttaaatcattatttaatacaatagcaaccctctggtgcgtacaccaaaggatagagataaaagacaccaaggaagctatagataaaatagaggaagtacaaactaagagtcagcaaaagaaacagcaggcagcagctggcacaggaagcaacagcaaagtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcagtctttatcacctagaactttgaatgcatgggtgaaagtagtagaagaaaagggttttaacccagaggtaatacccatgttttcagcattgtcagagggagccaccccacaagatttaaatatgatgttaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagaaaccatcaatgaggaagctgcagattgggataagacacacccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgacatagcaggaactactagtaaccttcaagaacaaataggatggatgacaaacaatccacctatcccagtgggagacatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaacctttcagagactatgtagataggttctacaaaactctcagagcggaacaagcaacacaggaggtaaaaaattggatgacggaaaccttactagtccaaaatgcaaatccagactgtaagtccattttaaaagcattaggaacaggagctacattggaagaaatgatgacagcatgccagggagtgggaggacctagccataaagcaagggttttggctgaggcaatgagccacgcacaacacacaggaataatgatgcagagaggcaattttaagggccagaaaagaattaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggttgttggaaatgtgggaaggaaggacatcaaatgaaagattgtactgagagacaggctaattttttagggaagctctggccttcccacaagggaaggccggggaacttccttcaaagccgaccagagccaacagccccaccagaggagagcttcaggtttggggaagagacaacaactccagttcagaagcaggagccgatagacaaggaactatatcctgtaacttccctcaaatcactctttggcaacgacccctcgtcacaataa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggttacggccagggggaaagaaaaaatataggctaaaacatatagtatgggcaagcagagaattggacagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaactaatagaacagttacaaccaactctcaagacaggatcagaagaacttaaatcattatttaatacaatagcaaccctctggtgcgtacaccaaaggatagagataaaagacaccaaggaagctatagataaaatagaggaagtacaa------------act---------------------aag---------------agtcag------caaaag---------------------------------aaacagcaggcagcagct---------------------------------ggcacagga------------------------------------------------------------------------------------------agcaacagcaaa------------------gtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcagtctttatcacctagaactttgaatgcatgggtgaaagtagtagaa---gaaaagggttttaacccagaggtaatacccatgttttcagcattgtcagagggagccaccccacaagatttaaatatgatgttaaatatagtggggggacaccaggcagcaatgcaaatgttaaaagaaaccatcaatgaggaagctgcagattgggataagacacacccagtacatgcagggcctattccaccaggccagatgagggaaccaaggggaagtgacatagcaggaactactagtaaccttcaagaacaaataggatggatgaca---------aacaatccacctatc---ccagtgggagacatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaacctttcagagactatgtagataggttctacaaaactctcagagcggaacaagcaacacaggaggtaaaaaattggatgacggaaaccttactagtc---caaaatgcaaatccagactgtaagtccattttaaaagcattaggaacaggagctacattggaagaaatgatgacagcatgccagggagtgggaggacctagccataaagcaagggttttggctgaggcaatg------------agccacgcacaa------------------------cacacaggaataatgatgcagaga---ggcaat---tttaagggc---cagaaa---aga---attaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctagaaaaaagggttgttggaaatgtgggaaggaaggacatcaaatgaaagattgtact---------gag---agacaggctaattttttagggaagctctgg---cct---tcccacaag---------gga---aggccggggaacttccttcaaagc------------------------------cgacca------gagccaacagcc---------------------------------------------------ccaccagag---gagagcttcaggtttggg---------------gaagagacaacaactccagtt------------------------cagaagcaggagccg------------------------atagacaag---------------------gaactatat---------cct---gta---acttccctcaaatcactctttggcaacgacccctcgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,7rev,10rev,12rev",6,2,4
"DQ366662",">Ref.33_01B.MY.05.05MYKL045_1.DQ366662","Ref","33_01B","MY","05","05MYKL045_1","DQ366662",125,2013,1,30,1468,1497,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgacccctcgtcacagtaa",1,30,1,30,1,30,1984,2013,1468,1497,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggctacggccagggggaaagaaaaaatataggctgaaacatttagtgtgggcaagcagagagttagaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaactaatagaacagttacagtcaactctcaagacaggatcagaagaacttaaatcattatttaatacaatagcaaccctctggtgcgtacaccagaggatagatgtaaaagacaccaaggaagctttagataaactggaggaagcacaaaataaagcacagcaaaagacacagcaggcagcagctggcacaggaagcagcagcaaagtcagccagaattaccctatagtgcaaaatgcacaagggcaaatggtacatcagtctttatcacctagaactttaaatgcatgggtaaaggtagtagaagaaaagggttttaacccagaggtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaatatgatgctgaatatggtggggggacaccaggcagcaatgcaaatgttaaaagaaaccatcaatgaggaagctgcagactgggataggacacacccagtacatgcagggcctattccaccaggccagatgagggagccaaggggaagtgacatagcaggaactactagtaaccttcaagaacaaatagcatggatgacaagcaatccacctatcccagtgggagacatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacctttcagagactatgtagataggttctacaagactctcagagcagaacaagctacacaggaggtaaaaaattggatgacagaaaccttactagtccaaaatgcgaatccagactgtaagtccattttaaaagcattaggaacaggagctacattggaagaaatgatgacagcatgccagggagtgggaggacctagccataaagcaagggttttggctgaggcaatgagccacgcacaacaagcaggtataatgatgcagaggggcaattttaagggccagaaaagaattaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagagcccctagaaaaaagggttgttggaaatgtgggcaggaaggacatcaaatgaaagattgtaccgagagacaggctaattttttagggaagctctggccttcccacaaggggaggccagggaatttccttcagagccgaccagagccaacagccccaccagcggagagcttcaggtttggggaggagacagcaactccatctcagaagcaggagccgatagacaaggaactatacccttcagcttccctcaaatcactctttggcaacgacccctcgtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggaaaaaattcggctacggccagggggaaagaaaaaatataggctgaaacatttagtgtgggcaagcagagagttagaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaactaatagaacagttacagtcaactctcaagacaggatcagaagaacttaaatcattatttaatacaatagcaaccctctggtgcgtacaccagaggatagatgtaaaagacaccaaggaagctttagataaactggaggaagcacaa------------aat---------------------aaa---------------gcacag------caaaag---------------------------------acacagcaggcagcagct---------------------------------ggcacagga------------------------------------------------------------------------------------------agcagcagcaaa------------------gtcagccagaattaccctatagtgcaaaatgcacaagggcaaatggtacatcagtctttatcacctagaactttaaatgcatgggtaaaggtagtagaa---gaaaagggttttaacccagaggtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaatatgatgctgaatatggtggggggacaccaggcagcaatgcaaatgttaaaagaaaccatcaatgaggaagctgcagactgggataggacacacccagtacatgcagggcctattccaccaggccagatgagggagccaaggggaagtgacatagcaggaactactagtaaccttcaagaacaaatagcatggatgaca---------agcaatccacctatc---ccagtgggagacatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacctttcagagactatgtagataggttctacaagactctcagagcagaacaagctacacaggaggtaaaaaattggatgacagaaaccttactagtc---caaaatgcgaatccagactgtaagtccattttaaaagcattaggaacaggagctacattggaagaaatgatgacagcatgccagggagtgggaggacctagccataaagcaagggttttggctgaggcaatg------------agccacgcacaa------------------------caagcaggtataatgatgcagagg---ggcaat---tttaagggc---cagaaa---aga---attaagtgcttcaactgtggcaaagaaggacacctagccagaaattgcagagcccctagaaaaaagggttgttggaaatgtgggcaggaaggacatcaaatgaaagattgtacc---------gag---agacaggctaattttttagggaagctctgg---cct---tcccacaag---------ggg---aggccagggaatttccttcagagc------------------------------cgacca------gagccaacagcc---------------------------------------------------ccaccagcg---gagagcttcaggtttggg---------------gaggagacagcaactccatct------------------------cagaagcaggagccg------------------------atagacaag---------------------gaactatac---------cct---tca---gcttccctcaaatcactctttggcaacgacccctcgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"EF165541",">Ref.34_01B.TH.99.OUR2478P.EF165541","Ref","34_01B","TH","99","OUR2478P","EF165541",126,2013,0,23,1465,1494,"gcgagagcgtcagtattaagtgg","ctctttggcaacgaccccttgttacagtaa",1,30,0,23,1,30,1984,2013,1465,1494,1984,2013,"gcgagagcgtcagtattaagtgggggaaaattagatagatgggaaaaaattcggttacggccaggaggaaagaaaagttatcagatgaaacatctagtatgggcaagcagggagttagaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacagtcaactctcaagacaggatcagaggaacttaaatcattatttaatacaatagcaaccctctggtgtgtacaccaagggatagatgtaaaagacaccaaggaagctttagataaattagaggaagtacaaaataagagtcagcaaaagacacagcaggcagcagctggcacaggaagcggcrgcaaagtcagccaaaattaccctatagtgcaaaatgcacaaggacaaatggtacatcagcctgtatcacctagaactttgaacgcatgggtgaaagtagtagaagaaaagggttttaacccagaagtaatacccatgttctcagcattatcagaaggagccaccccacaagatttaaatatgatgctaaatatagtggggggacatcaagcagccatgcaaatgttaaaagaaaccatcaatgaggaagctgcagactgggatagggtacacccagtacaggcagggcctattccaccaggccaaatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagagcaaataggatggatgacaagcaatccacctatcccagtgggagacatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttctataaaactctcagagcggaacaagctacacaggaagtaaaaaactggatgacagaaaccttgctagtccaaaatgcgaatccagactgtaagtccattttaaaagcattaggaacaggagctacattagaagaaatgatgacagcatgccagggagtaggaggacctagccataaagcaagggttttggctgaggcaatgagccaaacacaacaggcaaatatgatgatgatgcagagaggcaattttaagggccagaaaagaattaagtgcttcaactgtggcaaagaaggacacttagccagaaattgcagggcccctagaaaaaagggttgttggaaatgtgggaaggaaggacatcaaatgaaagactgcactgagaaacagattaattttttagggaaattttggccttccaacaagggaaggccggggaatttccctcagagcagaccagagccaacagccccaccagaggagagcttcaggtttggggaagggacaacaactccatctcagaaacaggagccgatagacaaggaactatatccttcagcttccctcaaatcactctttggcaacgaccccttgttacagtaa","------gcgagagcgtcagtattaagtgggggaaaattagatagatgggaaaaaattcggttacggccaggaggaaagaaaagttatcagatgaaacatctagtatgggcaagcagggagttagaaagattcgcacttaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacagtcaactctcaagacaggatcagaggaacttaaatcattatttaatacaatagcaaccctctggtgtgtacaccaagggatagatgtaaaagacaccaaggaagctttagataaattagaggaagtacaa------------aat---------------------aag---------------agtcag------caaaag---------------------------------acacagcaggcagcagct---------------------------------ggcacagga------------------------------------------------------------------------------------------agcggcrgcaaa------------------gtcagccaaaattaccctatagtgcaaaatgcacaaggacaaatggtacatcagcctgtatcacctagaactttgaacgcatgggtgaaagtagtagaa---gaaaagggttttaacccagaagtaatacccatgttctcagcattatcagaaggagccaccccacaagatttaaatatgatgctaaatatagtggggggacatcaagcagccatgcaaatgttaaaagaaaccatcaatgaggaagctgcagactgggatagggtacacccagtacaggcagggcctattccaccaggccaaatgagggaaccaaggggaagtgacatagcaggaactactagtacccttcaagagcaaataggatggatgaca---------agcaatccacctatc---ccagtgggagacatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttctataaaactctcagagcggaacaagctacacaggaagtaaaaaactggatgacagaaaccttgctagtc---caaaatgcgaatccagactgtaagtccattttaaaagcattaggaacaggagctacattagaagaaatgatgacagcatgccagggagtaggaggacctagccataaagcaagggttttggctgaggcaatg------------agccaaacacaacag---------------------gcaaatatgatgatgatgcagaga---ggcaat---tttaagggc---cagaaa---aga---attaagtgcttcaactgtggcaaagaaggacacttagccagaaattgcagggcccctagaaaaaagggttgttggaaatgtgggaaggaaggacatcaaatgaaagactgcact---------gag---aaacagattaattttttagggaaattttgg---cct---tccaacaag---------gga---aggccggggaatttccctcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagag---gagagcttcaggtttggg---------------gaagggacaacaactccatct------------------------cagaaacaggagccg------------------------atagacaag---------------------gaactatat---------cct---tca---gcttccctcaaatcactctttggcaacgaccccttgttacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","4rev,7rev,10rev,11fw,12rev","11fw","4rev,7rev,10rev,12rev",5,1,4
"EF158043",">Ref.35_AD.AF.05.05AF026.EF158043","Ref","35_AD","AF","05","05AF026","EF158043",127,2013,0,23,1456,1485,"gcgagagcgtcaatattaagtgg","ctctttggcaacgaccccttgtcacagtaa",1,30,0,23,1,30,1984,2013,1456,1485,1984,2013,"gcgagagcgtcaatattaagtggagaaaaattagatgcatgggaaagaattcggttaaggccagggggaaagaaaaaatatagactaaaacatctaatatgggcaagcagggagctggaaagatttgcagttaaccctagcctkttagaaacaacagaaggatgccaacagatamtggaacagttacaaccagctctcaagacaggatcagaagaacttagatcattatttaatacagtagcaaccctctattgcgtacatcaacagataggggtaaaagacaccaaggaagctctagataaaatagaggagatacaaaakaaaagcaagcaaaaggcacaacaggcagcagctgacacaggaagcagcaaggtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatgatacaccagtccttgtcacctaggactttgaatgcatgggtgaaagtaatagaagaaaaggctttcagcccagaagtaatacctatgttctcagcattatcagaaggagccaycccacaagatttaaatatgatgctgaacatagtagggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaagaagctgcagaatgggacaggatgcatccggtacakgcagggcctattgcaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagcacccctcaagarcagatagcatggatgacaggcaacccacctattccagtgggagacatttacaaaagatggataatcctggggttaaataaaatagtaagratgtatagcccctctagcattttggayataaaacaagggccaaaagaacctttcagagactatgtagataggttctttaaaaccctcagagctgagcaagctwcacaggaggtaaaaggttggatgacagacacattattgatccaaaatgcaaatccagattgtaagtccatcctaaaagcattaggaacaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacccrgccataaagcaagagttttagctgargcaatgrgtcaagtacaacatacaaacataatgatgcagagaggcaattttaggggccagaaaagaattaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtgggaaagaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggccttccaacaaggggaggccaggaaattttcctcagagcagaccagagccaacagccccaccagcagagagcttcgggtttggggaggagataacaccctctcagaaacaggagcagaaggggggggagctgtatcctgtaacttccctcaaatcactctttggcaacgaccccttgtcacagtaa","------gcgagagcgtcaatattaagtggagaaaaattagatgcatgggaaagaattcggttaaggccagggggaaagaaaaaatatagactaaaacatctaatatgggcaagcagggagctggaaagatttgcagttaaccctagcctkttagaaacaacagaaggatgccaacagatamtggaacagttacaaccagctctcaagacaggatcagaagaacttagatcattatttaatacagtagcaaccctctattgcgtacatcaacagataggggtaaaagacaccaaggaagctctagataaaatagaggagatacaa------------aak---------------------aaa---------------agcaag------caaaag---------------------------------gcacaacaggcagcagct---------------------------------gacacagga---------------------------------------------------------------------------------------------agcagcaag------------------gtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatgatacaccagtccttgtcacctaggactttgaatgcatgggtgaaagtaatagaa---gaaaaggctttcagcccagaagtaatacctatgttctcagcattatcagaaggagccaycccacaagatttaaatatgatgctgaacatagtagggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaagaagctgcagaatgggacaggatgcatccggtacakgcagggcctattgcaccaggccagataagagaaccaaggggaagtgatatagcaggaactactagcacccctcaagarcagatagcatggatgaca---------ggcaacccacctatt---ccagtgggagacatttacaaaagatggataatcctggggttaaataaaatagtaagratgtatagcccctctagcattttggayataaaacaagggccaaaagaacctttcagagactatgtagataggttctttaaaaccctcagagctgagcaagctwcacaggaggtaaaaggttggatgacagacacattattgatc---caaaatgcaaatccagattgtaagtccatcctaaaagcattaggaacaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacccrgccataaagcaagagttttagctgargcaatg------------rgtcaagtacaa------------------------catacaaacataatgatgcagaga---ggcaat---tttaggggc---cagaaa---aga---attaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtgggaaagaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccaggaaattttcctcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggtttggg---------------gaggagata---acaccctct------------------------cagaaacaggagcag------------------------aaggggggg---------------------gagctgtat---------cct---gta---acttccctcaaatcactctttggcaacgaccccttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","2rev,4rev,10rev,11fw,12rev","11fw","2rev,4rev,10rev,12rev",5,1,4
"EF158040",">Ref.35_AD.AF.05.05AF094.EF158040","Ref","35_AD","AF","05","05AF094","EF158040",128,2013,0,23,1474,1503,"gcgagagcgtcagtattaagtgg","ctctttggcaacgacccctcgtcacagtaa",1,30,0,23,1,30,1984,2013,1474,1503,1984,2013,"gcgagagcgtcagtattaagtggaggaaaattagatgcatgggagaaaattcggttaaggccagggggaaagaaaagatatagactaaaacatttagtatgggcaagcagggagctggatagatttgcacttaaccctggccttttagaaacagcagaaggatgccaacaaataatagaacagatacaaccagctctcaagacaggaacagaagaacttagatcattatataatacagtagcaaccctctattgcgtacatcaacagatagcggtaaaagacaccagggaagctctagataaaatagaggaactacaaaagaaaagcaagcaaaaagcacaacaagcagcagcacaacaggcagcagttgacacaggaagcagcaaggtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatgatacatcagtccttgtcacctaggactttgaatgcatgggtgaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttcacagcattatcagaaggagccaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggatgcatccagtacaggcagggcctgttgcaccaggccaaataagagaaccaaggggaagtgatatagcaggaactactagcacccctcaagaacagatagcatggatgacaaataacccacctattccagtgggggacatctacaaaagatggataatcctggggttaaataaaatagtaaggatgtatagccccgttagcattttggatataaaacaagggccaaaagagcctttcagagactatgtagataggttctttaaaactctcagagctgagcaagcttcacaggaggtaaaaggttggatgacagacacattattgatccaaaatgcaaatccagattgtaagtccatcctaagagcattaggaccaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacccagccataaagcaagggttttagctgaggcaatgggtcaagtacaaaatacaaacataatgatgcagagaggcaattttaagggccagaaaagaattaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtgggaaagaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggccttcccacaaggggaggccaggaaatttccctcagagcagaccagagccaacagccccaccagcagagagcttcgggtttggggaggagataacgccccctcagaaacaggagcagaaagacggggagacgatgtatcctttagcttccctcaaatcactctttggcaacgacccctcgtcacagtaa","------gcgagagcgtcagtattaagtggaggaaaattagatgcatgggagaaaattcggttaaggccagggggaaagaaaagatatagactaaaacatttagtatgggcaagcagggagctggatagatttgcacttaaccctggccttttagaaacagcagaaggatgccaacaaataatagaacagatacaaccagctctcaagacaggaacagaagaacttagatcattatataatacagtagcaaccctctattgcgtacatcaacagatagcggtaaaagacaccagggaagctctagataaaatagaggaactacaa------------aag---------------------aaa---------------agcaag------caaaaa---------------gcacaacaagca---gcagcacaacaggcagcagtt---------------------------------gacacagga---------------------------------------------------------------------------------------------agcagcaag------------------gtcagccaaaattaccctatagtgcaaaatgcacaagggcaaatgatacatcagtccttgtcacctaggactttgaatgcatgggtgaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttcacagcattatcagaaggagccaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggatgcatccagtacaggcagggcctgttgcaccaggccaaataagagaaccaaggggaagtgatatagcaggaactactagcacccctcaagaacagatagcatggatgaca---------aataacccacctatt---ccagtgggggacatctacaaaagatggataatcctggggttaaataaaatagtaaggatgtatagccccgttagcattttggatataaaacaagggccaaaagagcctttcagagactatgtagataggttctttaaaactctcagagctgagcaagcttcacaggaggtaaaaggttggatgacagacacattattgatc---caaaatgcaaatccagattgtaagtccatcctaagagcattaggaccaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacccagccataaagcaagggttttagctgaggcaatg------------ggtcaagtacaa------------------------aatacaaacataatgatgcagaga---ggcaat---tttaagggc---cagaaa---aga---attaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcagggcccctaggaaaaaaggctgttggaaatgtgggaaagaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggccaggaaatttccctcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggtttggg---------------gaggagata---acgccccct------------------------cagaaacaggagcag------------------------aaagacggg------------gag---acg---atgtat---------cct---tta---gcttccctcaaatcactctttggcaacgacccctcgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","2rev,4rev,7rev,10rev,11fw,12rev","11fw","2rev,4rev,7rev,10rev,12rev",6,1,5
"EF158041",">Ref.35_AD.AF.05.05AF095.EF158041","Ref","35_AD","AF","05","05AF095","EF158041",129,2013,0,23,1456,1485,"gcgagagcgtcaatattaagtgg","ctctttggcaacgacccctcgtcacagtaa",1,30,0,23,1,30,1984,2013,1456,1485,1984,2013,"gcgagagcgtcaatattaagtggaggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctggaaagattcgcacttaaccctagccttttagaaacaacagaaggatgccaacaaataatggaacagttacaaccagctctcaagacaggaacagaagaacttagatcattatttaatacagtagcaaccctctattgcgtacatcaaaagatagcaataaaagacaccaaggaagctctagataaaatagaggaaatacaaaataaaagcaagcaaaaagcacaacaggcagcagctgatacaggaagcagcaaggtcagccaaaattaccctatagtacaaaatgcacaagggcaaatggtacaccagtccttgtcacctaggaccttgaatgcatgggtgaaagtaatagaagaaaaggctttcagcccagaagtaatacctatgttctcagcattatcagaaggagccaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggacaggttgcatccggtacatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgatatagcaggaaccactagcacccctcaagaacagatagcatggatgacaggtaacccacctattccagtgggagacatctacaaaagatggataatcctgggattaaataaaatagtaaggatgtatagccccgttggcattttggatataaaacaagggccaaaagaacctttcagagactatgtagatcggttctttaaagttctcagagctgagcaagctacacaggaggtaaagggttggatgacagaaacattattggttcaaaatgcaaatccagattgtaagtccatcctgagagcattaggaacaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacccagccataaagcaagagttttagctgaggcaatgagtcaagcacaacatacaaacataatgatgcagaaaggcaattttaagggccataaaagaattaagtgtttcaactgtggcaaagacggacacctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggagagaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggaaaatttggccttcccacaaggggaggccaggaaattttcctcagagcagaccagagccaacagccccaccagcagagagcttcgggtttggggaggagataacgccctcccagaaacaggagcagaaagacggggagttgtatcctttagcttccctcaaatcactctttggcaacgacccctcgtcacagtaa","------gcgagagcgtcaatattaagtggaggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagactaaaacatctagtatgggcaagcagggagctggaaagattcgcacttaaccctagccttttagaaacaacagaaggatgccaacaaataatggaacagttacaaccagctctcaagacaggaacagaagaacttagatcattatttaatacagtagcaaccctctattgcgtacatcaaaagatagcaataaaagacaccaaggaagctctagataaaatagaggaaatacaa------------aat---------------------aaa---------------agcaag------caaaaa---------------------------------gcacaacaggcagcagct---------------------------------gatacagga---------------------------------------------------------------------------------------------agcagcaag------------------gtcagccaaaattaccctatagtacaaaatgcacaagggcaaatggtacaccagtccttgtcacctaggaccttgaatgcatgggtgaaagtaatagaa---gaaaaggctttcagcccagaagtaatacctatgttctcagcattatcagaaggagccaccccacaagatttaaatatgatgctgaacatagtggggggacaccaggcagctatgcaaatgttaaaagatactatcaatgaggaagctgcagaatgggacaggttgcatccggtacatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgatatagcaggaaccactagcacccctcaagaacagatagcatggatgaca---------ggtaacccacctatt---ccagtgggagacatctacaaaagatggataatcctgggattaaataaaatagtaaggatgtatagccccgttggcattttggatataaaacaagggccaaaagaacctttcagagactatgtagatcggttctttaaagttctcagagctgagcaagctacacaggaggtaaagggttggatgacagaaacattattggtt---caaaatgcaaatccagattgtaagtccatcctgagagcattaggaacaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacccagccataaagcaagagttttagctgaggcaatg------------agtcaagcacaa------------------------catacaaacataatgatgcagaaa---ggcaat---tttaagggc---cataaa---aga---attaagtgtttcaactgtggcaaagacggacacctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggagagaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggccaggaaattttcctcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggtttggg---------------gaggagata---acgccctcc------------------------cagaaacaggagcag------------------------aaagacggg---------------------gagttgtat---------cct---tta---gcttccctcaaatcactctttggcaacgacccctcgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","4rev,11fw,12rev","11fw","4rev,12rev",3,1,2
"EF087995",">Ref.36_cpx.CM.00.00CMNYU1162.EF087995","Ref","36_cpx","CM","00","00CMNYU1162","EF087995",130,2013,0,23,1465,1494,"gcgagagcgtcagtattaagtgg","ctctttggcaacgacccttagttacagtaa",1,30,0,23,1,30,1984,2013,1465,1494,1984,2013,"gcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattcggttaaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagagagctagaaagattcgcacttaaccctggccttttagaatcagcagagggatgtcaacaaataatagaacagttacaatcaactctcaagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtacatcaacggatagatgtaaaagacaccaaggaagctttagataaaatagaggagttacaaggtaacagcaagcaaaagacacagcagacagcagctgacacaggaagcagcagcaaagtcagccaaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaacctatatcacctagaacgttgaatgcatgggtgaaagtagtagaagaaaagggttttagcccagaagtaatacccatgttctcagcattatcagaaggagctaccccacaagatttaaatatgatgctaaacatagtggggggacaccaggcagcaatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggatagggtacacccagtacaggcagggcctcatccaccaggccagataagagaaccaagggggagtgacgtagcaggaactactagtaaccttcaagaacaaatagcatggatgacacacaacccacctatcccagtaggagaaatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttctttaaaactcttagagcggaacaagctacacaggaggtaaaaaattggatgacagaaaccttgctagtccaaaatgcgaacccagactgtaagtccattttaaaagcattaggaacaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacctggccataaagcaagggttttagctgaggcaatgagccaaatacaacagacaggtataatgatgcagagaagcaattttaggggccagagaacaataaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcaaggcccccaggaaaaagggctgttggaaatgtgggaaggaaggacaccgaatgaaagactgcactaatgaaagacaggctaattttttagggaaaatttggccttccagcaaggggaggccagggaactttcctcagagcagatcagaaccaacagccccaccagcagagaactttgggatgggggaagagacgccctcctctcagaagcaggaaacgggggacaagggactatatcctcccttaacttccctcaaatcactctttggcaacgacccttagttacagtaa","------gcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattcggttaaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagagagctagaaagattcgcacttaaccctggccttttagaatcagcagagggatgtcaacaaataatagaacagttacaatcaactctcaagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtacatcaacggatagatgtaaaagacaccaaggaagctttagataaaatagaggagttacaa------------ggt---------------------aac---------------agcaag------caaaag---------------------------------acacagcagacagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------agcagcagcaaa------------------gtcagccaaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaacctatatcacctagaacgttgaatgcatgggtgaaagtagtagaa---gaaaagggttttagcccagaagtaatacccatgttctcagcattatcagaaggagctaccccacaagatttaaatatgatgctaaacatagtggggggacaccaggcagcaatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggatagggtacacccagtacaggcagggcctcatccaccaggccagataagagaaccaagggggagtgacgtagcaggaactactagtaaccttcaagaacaaatagcatggatgaca---------cacaacccacctatc---ccagtaggagaaatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttctttaaaactcttagagcggaacaagctacacaggaggtaaaaaattggatgacagaaaccttgctagtc---caaaatgcgaacccagactgtaagtccattttaaaagcattaggaacaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacctggccataaagcaagggttttagctgaggcaatg------------agccaaatacaa------------------------cagacaggtataatgatgcagaga---agcaat---tttaggggc---cagaga---aca---ataaagtgtttcaactgtggcaaagaaggacacctagccagaaattgcaaggcccccaggaaaaagggctgttggaaatgtgggaaggaaggacaccgaatgaaagactgcactaat------gaa---agacaggctaattttttagggaaaatttgg---cct---tccagcaag---------ggg---aggccagggaactttcctcagagc------------------------------agatca------gaaccaacagcc---------------------------------------------------ccaccagca---gagaactttgggatgggg---------------gaagagacg---ccctcctct------------------------cagaagcaggaaacg------------------------ggggacaag---------------------ggactatat------cctccc---tta---acttccctcaaatcactctttggcaacgacccttagttacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","10rev,11fw,12rev","11fw","10rev,12rev",3,1,2
"EF087994",">Ref.36_cpx.CM.00.00CMNYU830.EF087994","Ref","36_cpx","CM","00","00CMNYU830","EF087994",131,2013,0,23,1468,1497,"gcgagagcgtcagtattaagtgg","ctctttggcaacgacccttagttacagtaa",1,30,0,23,1,30,1984,2013,1468,1497,1984,2013,"gcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattcggttaaggccagggggaaagaaaaaatatagaataaaacatttagtatgggcaagcagagagttagaaagattcgcagttgaccctggccttttagaatcagcagagggatgtcaacaaataatagaacagctacaaccaactctcaagacaggatcagaagaacttaaatcattatataatacagtagcaaccctctattgtgtacatcaacggatagatgtaaaagacaccaaggaagctttagataaaatagagaagttacaaagtaacagcaagcaaaagacacagcaggcagcagctgacacaggaagcagcagcacagtcagccgaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaggctttatcacctagaactttgaatgcatgggtgaaagtagtagaagaaaagggttttaacccagaagtaatacccatgttctcagcattatcagagggagctaccccacaagatttaaatatgatgctaaacatagtggggggacaccaggcagcaatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggatagggtacacccagtacatgcagggcctcatccaccaggccagataagagaaccaaggggaagtgacatagcagaaactactagtacccttcaagaacaaatagcatggatgacaaacaacccacctatttctccagtaggagaaatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttctttaaaactcttagagcggaacaagctacacaggatgtaaaaaattggatgacagaaaccttgctagtccaaaatgcgaacccagactgtaagtccattttaaaagcattaggaacaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacctggccataaggcaagggttttagctgaggcaatgagccaagtacaacatgcaggtataatgatacagagaagcaattttaggggccaaagaacaataaaatgtttcaactgtggcaaggaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggaaggacaccaaatgaaagactgcactaatgaaagacaggctaattttttagggaaaatttggccttccagcaaggggaggccagggaattttcctcagagcagaccagaaccaacagccccaccagcagagaactttgggataggggaagagatgtcctcttctcagaagcaggaatcgagggacaagggactatatcctcccttaacttccctcaaatcactctttggcaacgacccttagttacagtaa","------gcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattcggttaaggccagggggaaagaaaaaatatagaataaaacatttagtatgggcaagcagagagttagaaagattcgcagttgaccctggccttttagaatcagcagagggatgtcaacaaataatagaacagctacaaccaactctcaagacaggatcagaagaacttaaatcattatataatacagtagcaaccctctattgtgtacatcaacggatagatgtaaaagacaccaaggaagctttagataaaatagagaagttacaa------------agt---------------------aac---------------agcaag------caaaag---------------------------------acacagcaggcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------agcagcagcaca------------------gtcagccgaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaggctttatcacctagaactttgaatgcatgggtgaaagtagtagaa---gaaaagggttttaacccagaagtaatacccatgttctcagcattatcagagggagctaccccacaagatttaaatatgatgctaaacatagtggggggacaccaggcagcaatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggatagggtacacccagtacatgcagggcctcatccaccaggccagataagagaaccaaggggaagtgacatagcagaaactactagtacccttcaagaacaaatagcatggatgaca---------aacaacccacctatttctccagtaggagaaatctataaaaggtggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttctttaaaactcttagagcggaacaagctacacaggatgtaaaaaattggatgacagaaaccttgctagtc---caaaatgcgaacccagactgtaagtccattttaaaagcattaggaacaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacctggccataaggcaagggttttagctgaggcaatg------------agccaagtacaa------------------------catgcaggtataatgatacagaga---agcaat---tttaggggc---caaaga---aca---ataaaatgtttcaactgtggcaaggaaggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaggaaggacaccaaatgaaagactgcactaat------gaa---agacaggctaattttttagggaaaatttgg---cct---tccagcaag---------ggg---aggccagggaattttcctcagagc------------------------------agacca------gaaccaacagcc---------------------------------------------------ccaccagca---gagaactttgggataggg---------------gaagagatg---tcctcttct------------------------cagaagcaggaatcg------------------------agggacaag---------------------ggactatat------cctccc---tta---acttccctcaaatcactctttggcaacgacccttagttacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","5fw,10rev,12rev","5fw","10rev,12rev",3,1,2
"EF116594",">Ref.37_cpx.CM.00.00CMNYU926.EF116594","Ref","37_cpx","CM","00","00CMNYU926","EF116594",132,2013,0,23,1453,1482,"gcgagagcgtcagtgttaactgg","ctctttggcagcgacccataaccacagtaa",1,30,0,23,1,30,1984,2013,1453,1482,1984,2013,"gcgagagcgtcagtgttaactgggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaagaaacaatatagaatgaaacatttagtatgggcaagcagggagctggaaagattcgcacttaaccctggccttttagaaacagcagaaggatgccagcaaataatagaacagttacaatcaactctcaagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctggtgtgtacaccaacggatagatgtaagagacaccaaggaagctttagataaattagaggaagtacaaaataagcaaaagacacagcaggcagcagctggcacaggaagcagctgcaagatcagccaaaattaccctatagtgcaaaatgcacaagggcaaatgatacatcagtccttgtcacccaggactttgaatgcatgggtaaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttcacagcattgtcagatggagccaccccacacgatttaaatgcgatgctaaatgtagtgggaggacatcaggcagctatgcaaatgttaaaggataccatcaatgaggaagctgcagactgggacagggtacatccagtacatgcagggcctcatccaccaggccagttgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagagcaagtagcatggatgacaagcaacccacctatcccagtgggagacatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttctttaaggttctcagagctgagcaatctacacaggaggtaaaaaactggatgacagaaaccctgctagtccaaaatgcgaatccagactgtaagtccattttaaaagcattaggaacaggggctacattagaagaaatgatgacagcatgccagggagtaggaggacctggccataaagcaagggttttagctgaggcaatgactcaagcacaacagacaagcataatgatgcaaagaagcaattttaagggtccaaaaagaaatattaaatgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcactgagagacaggctaattttttagggagaatttggccttccagcaaagggaggccaggaaattttcctcagagcagaccggagccaacagccccaccagcagagagcttcgaggtgaaagaggaagtagcctcctctctgaagcaggagggcaaggaactataccctcctttagcttccctcaaatcactctttggcagcgacccataaccacagtaa","------gcgagagcgtcagtgttaactgggggaaaattagatgcatgggaaaaaattcggttaaggccagggggaaagaaacaatatagaatgaaacatttagtatgggcaagcagggagctggaaagattcgcacttaaccctggccttttagaaacagcagaaggatgccagcaaataatagaacagttacaatcaactctcaagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctggtgtgtacaccaacggatagatgtaagagacaccaaggaagctttagataaattagaggaagtacaa------------------------------------------------------aataag------caaaag---------------------------------acacagcaggcagcagct---------------------------------ggcacagga------------------------------------------------------------------------------------------agcagctgcaag------------------atcagccaaaattaccctatagtgcaaaatgcacaagggcaaatgatacatcagtccttgtcacccaggactttgaatgcatgggtaaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttcacagcattgtcagatggagccaccccacacgatttaaatgcgatgctaaatgtagtgggaggacatcaggcagctatgcaaatgttaaaggataccatcaatgaggaagctgcagactgggacagggtacatccagtacatgcagggcctcatccaccaggccagttgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagagcaagtagcatggatgaca---------agcaacccacctatc---ccagtgggagacatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaacccttcagagactatgtagataggttctttaaggttctcagagctgagcaatctacacaggaggtaaaaaactggatgacagaaaccctgctagtc---caaaatgcgaatccagactgtaagtccattttaaaagcattaggaacaggggctacattagaagaaatgatgacagcatgccagggagtaggaggacctggccataaagcaagggttttagctgaggcaatg------------actcaagcacaa------------------------cagacaagcataatgatgcaaaga---agcaat---tttaagggt---ccaaaa---agaaatattaaatgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagactgcact---------gag---agacaggctaattttttagggagaatttgg---cct---tccagcaaa---------ggg---aggccaggaaattttcctcagagc------------------------------agaccg------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgaggtgaaa---------------gaggaagta---gcctcctct------------------------ctgaagcaggag------------------------------ggcaag---------------------gaactatac------cctcct---tta---gcttccctcaaatcactctttggcagcgacccataaccacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","7rev,11fw,12rev","11fw","7rev,12rev",3,1,2
"AF377957",">Ref.37_cpx.CM.97.CM53392.AF377957","Ref","37_cpx","CM","97","CM53392","AF377957",133,2013,0,23,1480,1509,"gcgagagcgtcagtattaagtgg","ctctttggcagcgacccataatcaaagtaa",1,30,0,23,1,30,1984,2013,1480,1509,1984,2013,"gcgagagcgtcagtattaagtgggggaaaattagatgaatgggaaagaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagggagctagaaagatttgcacttaaccctggccttttagaaacagcagaaggatgtcagcaactaatagagagcttacaatcaactctcaagacaggatcagaggaacttaaatcattgtttaatacaatagcaaccctctggtgcgtacatcaacggatgggtgtaaaagacaccaaggaagctttagataaattagaggaagtacaaaataagaacaggcaaaagatacagcaggcacaaaagacacagcaggcagcagctgccacaggaagcagctgcagcagccaaaattaccctatagtgcagaatgcacaagggcaaatgacacatcaggccatatcacccaggactttgaatgcatgggtaaaagtagtagaagaaaaggctttcagcccagaagtaatacccatgttttcagcattgtcagaaggagccaccccacaagatttgaacatgatgctaaatatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgtagaatgggacagggtgcatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgacaagtaacccacctatcccagtgggagacatctataaaagatggataatcctaggattaaacaaaatagtaagaatgtatagccctgtcagtattttggacataagacaagggccaaaagaacccttcagagattatgtagataggttctttaaggctctcagagctgagcaagctacacaagaggtaaaaagctggatgacagaaaccctgctggtccaaaatgcgaatccagactgtaagtccatcttaaaagcattaggagcaggggctacactagaagaaatgatgacagcatgccagggagtaggagggcctggccataaagcaagggttttagctgaagcaatgagtcaagcacaacagacaagcataatgatgcaaaaaagcaattttaagggcccaagaagaattattaaatgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggaaggaaggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccagcaaggggaggccaggaaattttcctcagagcagaccggagccaacagccccaccagcagagagcttcgagatgaaagaggaagtaacctcctctctgaagcaggaaccgagggacaaggaactataccctcctttagcttccctcaaatcactctttggcagcgacccataatcaaagtaa","------gcgagagcgtcagtattaagtgggggaaaattagatgaatgggaaagaattcggttgaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagggagctagaaagatttgcacttaaccctggccttttagaaacagcagaaggatgtcagcaactaatagagagcttacaatcaactctcaagacaggatcagaggaacttaaatcattgtttaatacaatagcaaccctctggtgcgtacatcaacggatgggtgtaaaagacaccaaggaagctttagataaattagaggaagtacaa------------aat---------------------aag---------------aacagg------caaaagatacag------caggcacaa---aag------acacagcaggcagcagct---------------------------------gccacagga------------------------------------------------------------------------------------------agcagctgc---------------------agcagccaaaattaccctatagtgcagaatgcacaagggcaaatgacacatcaggccatatcacccaggactttgaatgcatgggtaaaagtagtagaa---gaaaaggctttcagcccagaagtaatacccatgttttcagcattgtcagaaggagccaccccacaagatttgaacatgatgctaaatatagtggggggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgtagaatgggacagggtgcatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggatgaca---------agtaacccacctatc---ccagtgggagacatctataaaagatggataatcctaggattaaacaaaatagtaagaatgtatagccctgtcagtattttggacataagacaagggccaaaagaacccttcagagattatgtagataggttctttaaggctctcagagctgagcaagctacacaagaggtaaaaagctggatgacagaaaccctgctggtc---caaaatgcgaatccagactgtaagtccatcttaaaagcattaggagcaggggctacactagaagaaatgatgacagcatgccagggagtaggagggcctggccataaagcaagggttttagctgaagcaatg------------agtcaagcacaa------------------------cagacaagcataatgatgcaaaaa---agcaat---tttaagggc---ccaaga---agaattattaaatgtttcaactgtggcaaggaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtgggaaggaaggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccagcaag---------ggg---aggccaggaaattttcctcagagc------------------------------agaccg------gagccaacagcc---------------------------------------------------ccaccagca---gagagcttcgagatgaaa---------------gaggaagta---acctcctct------------------------ctgaagcaggaaccg------------------------agggacaag---------------------gaactatac------cctcct---tta---gcttccctcaaatcactctttggcagcgacccataatcaaagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","2rev,4rev,7rev,10rev,11fw,12rev","11fw","2rev,4rev,7rev,10rev,12rev",6,1,5
"FJ213781",">Ref.38_BF1.UY.04.UY04_3987.FJ213781","Ref","38_BF1","UY","04","UY04_3987","FJ213781",134,2013,1,30,1477,1506,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgaccaatagtcaaaataa",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagaaaattcggttacggccagggggaaagaaaaaatatagattaaaacacatagtatgggcaagcagggagttagaacgatttgcagttaatcctggcctattagaatcagcagaaggctgtcggaaaatcataggacagctacaaccatcccttcagacaggatcagaagagcttaaatcattatttaatacagtagcagtcctctactatgtacataaaaaggtagagatacaggacaccaaggaggctctagataagctagaggaagagcaaaacaaaagtcagcaaaagacacagcaagcggcagctgacaaagaggtcagtcaaaattaccctatagtacaaaatcttcagggacaaatggtacaccaggctctatcacctagaactttaaatgcatgggtaaaggtgatagaagagaaggcttttagcccagaagtaatacctatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagagtacatccagtgcatgcaggacctatcccaccaggtcagatgagggaaccgaggggaagtgatatagcaggaactactagtacccttcaggaacagatacaatggatgaccagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagagccttttagggactatgtagacagattctttaaaaccctaagagctgagcaagccacacaggaagtgaagaattggatgacagacaccttgttgatccaaaattcgaacccagattgtaaaaccattttaaaagcattgggaccaggggcttcactagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagagttttggctgaggcaatgagccaagcaacacatacaactgtaatgatgcagaaaaataactttaagggcccaagaagaaatattaaatgtttcaattgtggcaaagaaggacacctagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagagggacaccaaatgaaagactgcactgaaagacaggttaattttttagggaaaatttggccttccaacaagggaaggccgggaaatttccttcagagcaggctagagccaacagccccaccagcagagagttttgggttcggggaggagataaccccctctccgaagcagaagcaggagcagaagcaggaacagagagacgagggactgtatcctcctttagcttccctcaaatcactctttggcaacgaccaatagtcaaaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagaaaattcggttacggccagggggaaagaaaaaatatagattaaaacacatagtatgggcaagcagggagttagaacgatttgcagttaatcctggcctattagaatcagcagaaggctgtcggaaaatcataggacagctacaaccatcccttcagacaggatcagaagagcttaaatcattatttaatacagtagcagtcctctactatgtacataaaaaggtagagatacaggacaccaaggaggctctagataagctagaggaagagcaa------------aac---------------------aaa---------------agtcag------caaaag---------------------------------acacagcaagcggcagct---------------------------------gacaaagag------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacaaaatcttcagggacaaatggtacaccaggctctatcacctagaactttaaatgcatgggtaaaggtgatagaa---gagaaggcttttagcccagaagtaatacctatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacagagtacatccagtgcatgcaggacctatcccaccaggtcagatgagggaaccgaggggaagtgatatagcaggaactactagtacccttcaggaacagatacaatggatgacc---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagagccttttagggactatgtagacagattctttaaaaccctaagagctgagcaagccacacaggaagtgaagaattggatgacagacaccttgttgatc---caaaattcgaacccagattgtaaaaccattttaaaagcattgggaccaggggcttcactagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagagttttggctgaggcaatg------------agccaagcaaca------------------------catacaactgtaatgatgcagaaa---aataac---tttaagggc---ccaaga---agaaatattaaatgtttcaattgtggcaaagaaggacacctagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagagggacaccaaatgaaagactgcact---------gaa---agacaggttaattttttagggaaaatttgg---cct---tccaacaag---------gga---aggccgggaaatttccttcagagc------------------------------aggcta------gagccaacagcc---------------------------------------------------ccaccagca---gagagttttgggttcggg---------------gaggagata---accccctct------------------------ccgaagcagaagcaggagcagaag------caggaacagagagacgag---------------------ggactgtat------cctcct---tta---gcttccctcaaatcactctttggcaacgaccaatagtcaaaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,5fw,7rev,11fw,12rev","1fw,5fw,11fw","4rev,7rev,12rev",6,3,3
"FJ213782",">Ref.38_BF1.UY.04.UY04_4022.FJ213782","Ref","38_BF1","UY","04","UY04_4022","FJ213782",135,2013,1,30,1459,1488,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccgtagtcacaataa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatacatgggaaaaaattcggctaaggccaggcggaaagaaaaaatataaattaaaacacctagtatgggcaagcagggagctagaacgatttgcagttaatcctggcctattagaaacaacagaaggctgtcgaaaaataataggacagctacaaccatctattcagacaggatcagaagaacttaaatcattatataatacagtagcagtcctctactatgtacatcaaggggtagaggtaaaagacaccaaggaagctctagacaagctagaggaagagcaaaacaaaagtcagcaaaagaaacagcaagcggcagctgacaaaggggtcagtcaaaattaccctatagtacagaatcttcagggrcaaatggtacaccaacctatatcacctagaactttaaatgcatgggtgaaggtggtagaagagaaggcttttagccccgaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagactgggacagattacatccagtgcatgcaggacctatcccaccaggtcagatgagggaacctaggggaagtgacatagctggaactactagtacccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaagtcctaagagctgagcaagctacacaggaagtaaagggttggatgacagacacattgttggtccaaaatgcraaccctgattgtaaaaccattttaaaagcattgggaacaggggctacactagaagaaatgatggcagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaggcaatgagccaagtaacaagtacagctgtaatgatgcagaacagtaactttaagggccaaagaaaaattgttaaatgtttcaattgtggcaaacaaggacatatagctagaaattgcaaggcccctagaaaaaagggctgttggaaatgtggaggagaaggacaccaaatgaaagactgccctggaggacaggctaattttttagggaaaatttggccttccaacaaggggaggcctggaaatttccttcagaacaggacagagcccagccccaccccagaagagagctttgggttcggagaggagataactccctctccgaagcaggagcagaaaaacgagggactgtaccctcccttagcttccctcaaatcactctttggcaacgacccgtagtcacaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatacatgggaaaaaattcggctaaggccaggcggaaagaaaaaatataaattaaaacacctagtatgggcaagcagggagctagaacgatttgcagttaatcctggcctattagaaacaacagaaggctgtcgaaaaataataggacagctacaaccatctattcagacaggatcagaagaacttaaatcattatataatacagtagcagtcctctactatgtacatcaaggggtagaggtaaaagacaccaaggaagctctagacaagctagaggaagagcaa------------aac---------------------aaa---------------agtcag------caaaag---------------------------------aaacagcaagcggcagct---------------------------------gacaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatcttcagggrcaaatggtacaccaacctatatcacctagaactttaaatgcatgggtgaaggtggtagaa---gagaaggcttttagccccgaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagataccatcaatgaggaagctgcagactgggacagattacatccagtgcatgcaggacctatcccaccaggtcagatgagggaacctaggggaagtgacatagctggaactactagtacccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaagtcctaagagctgagcaagctacacaggaagtaaagggttggatgacagacacattgttggtc---caaaatgcraaccctgattgtaaaaccattttaaaagcattgggaacaggggctacactagaagaaatgatggcagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaggcaatg------------agccaagtaaca------------------------agtacagctgtaatgatgcagaac---agtaac---tttaagggc---caaaga---aaaattgttaaatgtttcaattgtggcaaacaaggacatatagctagaaattgcaaggcccctagaaaaaagggctgttggaaatgtggaggagaaggacaccaaatgaaagactgccct---------gga---ggacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggcctggaaatttccttcagaac------------------------------aggaca------gagcccagccccacccca---------------------------------------------------gaa---gagagctttgggttcgga---------------gaggagata---actccctct------------------------ccgaagcaggagcag------------------------aaaaacgag---------------------ggactgtac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccgtagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,5fw,6rev,7rev,10rev,11fw,12rev","1fw,5fw,11fw","4rev,6rev,7rev,10rev,12rev",8,3,5
"FJ213780",">Ref.38_BF1.UY.05.UY05_4752.FJ213780","Ref","38_BF1","UY","05","UY05_4752","FJ213780",136,2013,1,30,1459,1488,"atgggtgcgagagcgtcaatattaaccggg","ctctttggcaacgacccttagtcacaataa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcaatattaaccgggggaaaattggatgcatgggaaaaaattcggttacggccaggaggaaagaaaaaatataggttaaaacatctagtatgggcaagcagggagctagaacgattcgcagttgaccctggcctattagaaacaccagaaggctgtagaaagataatagtacagctacaaccatcccttcagacaggatcagaagagcttaaatcattatataatacaatagtagtcctctactttgtacatcgaaaggtagaggtaaaggacaccaaggaagctctagataagttagaggaagaacaaaataaaagtcagcaaaagacacagcaagcggcagctggacagggggtcagtcaaaattaccccatagtacagaatcttcagggacaaatggtacaccagtctatatcacctagaactttaaatgcatgggtaaaggtgatagaagagaaggcttttagcccagaagtaatacccatgttttcagcattatcagagggagccaccccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcagatgttaaaagataccatcaatgaagaagctgcagaatgggacagaatacatccagtgcaggcagggcctatcccaccaggccagataagggaacctaggggaagtgatatagcaggaactactagtaaccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaagccctaagagctgagcaagccacacaggaagtaaagaattggatgacagacaccttgttggtccaaaatgcaaacccagattgtaaaaccattctaaaaggattgggaataggggccacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaggcaatgagccaggtaacaaatccaattgtaatgatgcagaaaaataactttaagggccaaagaagaagtattaaatgtttcaattgtggcaaagaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagagggacaccagatgaaagactgcacagaaagacaagctaattttttagggaaaatttggccttccaacaaggggaggccaggaaatttccttcagaacaggccagagccaacagccccaccagcagagagctttgggttcggagaggagatagccccctctccgaagcaggagcagaagaacgagggactgtaccctcccttagcttccctcaaatcactctttggcaacgacccttagtcacaataa","atgggtgcgagagcgtcaatattaaccgggggaaaattggatgcatgggaaaaaattcggttacggccaggaggaaagaaaaaatataggttaaaacatctagtatgggcaagcagggagctagaacgattcgcagttgaccctggcctattagaaacaccagaaggctgtagaaagataatagtacagctacaaccatcccttcagacaggatcagaagagcttaaatcattatataatacaatagtagtcctctactttgtacatcgaaaggtagaggtaaaggacaccaaggaagctctagataagttagaggaagaacaa------------aat---------------------aaa---------------agtcag------caaaag---------------------------------acacagcaagcggcagct---------------------------------ggacagggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccccatagtacagaatcttcagggacaaatggtacaccagtctatatcacctagaactttaaatgcatgggtaaaggtgatagaa---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagagggagccaccccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcagatgttaaaagataccatcaatgaagaagctgcagaatgggacagaatacatccagtgcaggcagggcctatcccaccaggccagataagggaacctaggggaagtgatatagcaggaactactagtaaccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaagccctaagagctgagcaagccacacaggaagtaaagaattggatgacagacaccttgttggtc---caaaatgcaaacccagattgtaaaaccattctaaaaggattgggaataggggccacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaggcaatg------------agccaggtaaca------------------------aatccaattgtaatgatgcagaaa---aataac---tttaagggc---caaaga---agaagtattaaatgtttcaattgtggcaaagaaggacatctagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagagggacaccagatgaaagactgcaca---------gaa---agacaagctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccaggaaatttccttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccaccagca---gagagctttgggttcgga---------------gaggagata---gccccctct------------------------ccgaagcaggagcag------------------------aagaacgag---------------------ggactgtac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccttagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,11fw,12rev","1fw,11fw","2rev,4rev,12rev",5,2,3
"EU735534",">Ref.39_BF.BR.03.03BRRJ103.EU735534","Ref","39_BF","BR","03","03BRRJ103","EU735534",137,2013,1,30,1489,1518,"atgggtgcgagagcgtcagtattgagcggg","ctctttggcagcgacccatcgtcacagtaa",1,30,1,30,1,30,1984,2013,1489,1518,1984,2013,"atgggtgcgagagcgtcagtattgagcgggggagaattagataggtgggaaaaaattcggttaaggccagggggaaagaaaaaatataggttaaagcatctagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctgttagaaacatcagaaggctgtagacaaataataggacaactacaaccatcccttcagacaggatcagaagaattaagatcattatataatacagtagcagtcctctattgtgtgcatcaaaagatagatgtaaaagacaccaaggaagctttagataagatagaggaagagcaaaacaaaagtaagaaaaaggcacagcaagcagcagctgacacaggaaacaacagtcaggtcagccaaaatttccctatagtgcagaaccttcaggggcaaatggtacatcaggccctatcacctagaactttaaatgcatgggtaaaagtaatagaagagaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacacagtggggggacatcaagcagctatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggatagattgcatccagtacatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggatggatgacaaataatccacctatcccagtaggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagtcctgtcagcattctggacataagacaagggccaaaggaacccttcagagactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggatgtaaaaaattggatgacagaaaccttgctagttcaaaatgcgaatccagattgtaagaccattttaaaagcattaggaccagcagctacactagaagaaatgatgacagcctgtcagggagtggggggacccagccataaagcaagagttttggctgaagcaatgagccaagcaacaaatcaaactaatgtaatgatgcagagaggcaattttaggaaccaaagaaagactgttaagtgtttcaattgtggcaaagaagggcacgtagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagaatgcacagagagacaggctaattttttagggaaaatctggccttcccacaaggggaggccagggaattttcttcagaccagaccagagccaacagccccaccagccccatcagaagagagcttcaggtttggggaagggacaacaactccctctcggaagacggagctgacagacagggacaaggaactgtatcccttaacttccctcagatcactctttggcagcgacccatcgtcacagtaa","atgggtgcgagagcgtcagtattgagcgggggagaattagataggtgggaaaaaattcggttaaggccagggggaaagaaaaaatataggttaaagcatctagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctgttagaaacatcagaaggctgtagacaaataataggacaactacaaccatcccttcagacaggatcagaagaattaagatcattatataatacagtagcagtcctctattgtgtgcatcaaaagatagatgtaaaagacaccaaggaagctttagataagatagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaaag---------------------------------gcacagcaagcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------aacaacagtcag------------------gtcagccaaaatttccctatagtgcagaaccttcaggggcaaatggtacatcaggccctatcacctagaactttaaatgcatgggtaaaagtaatagaa---gagaaggctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaataccatgctaaacacagtggggggacatcaagcagctatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggatagattgcatccagtacatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggatggatgaca---------aataatccacctatc---ccagtaggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagtcctgtcagcattctggacataagacaagggccaaaggaacccttcagagactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggatgtaaaaaattggatgacagaaaccttgctagtt---caaaatgcgaatccagattgtaagaccattttaaaagcattaggaccagcagctacactagaagaaatgatgacagcctgtcagggagtggggggacccagccataaagcaagagttttggctgaagcaatg------------agccaagcaacaaat---------------------caaactaatgtaatgatgcagaga---ggcaat---tttaggaac---caaaga---aagactgttaagtgtttcaattgtggcaaagaagggcacgtagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagaatgcaca---------gag---agacaggctaattttttagggaaaatctgg---cct---tcccacaag---------ggg---aggccagggaattttcttcagacc------------------------------agacca------gagccaacagcc---ccaccagcc---------------------------------------ccatcagaa---gagagcttcaggtttggg---------------gaagggacaacaactccctct------------------------cggaagacggagctg------------------------acagacagg------------gacaag---gaactgtat---------ccc---tta---acttccctcagatcactctttggcagcgacccatcgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,6rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,6rev,7rev,10rev,12rev",7,2,5
"EU735536",">Ref.39_BF.BR.03.03BRRJ327.EU735536","Ref","39_BF","BR","03","03BRRJ327","EU735536",138,2013,1,30,1474,1503,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccctcgtcacagtaa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatagctgggaaaaaattcggttaaggccagggggaaagaaaaaatatagattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctgttagaaacaccagagggctgtagacaaatactgggacagctacaaccatcccttcagacaggatcagaagaacttaagtcattatttaatacagtagcaaccctctattgtgtgcatcaaaggatagagataaaagacaccaaggaagcactagataggatagaggaagagcaaaacaaaagtaagaaaaaggcacagcaagcagcaactgacacaggaaacaacagtcaggtcagtcaaaattaccctatagtgcagaatcttcaggggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtaatagaagagaaagctttcagcccagaagtaatacccatgttttcagcattgtcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaggcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagattgcatccagtacatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggatggatgacaaataatccacctatcccagtgggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagtcctgtcagcattctggacataagacaaggaccaaaggaaccctttagagactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggaagtaaaaaattggatgacagaaaccttgctagtccaaaatgcgaacccagattgtaagactattttaaaagcattaggaccagcagctacactagaagaaatgatgtcagcatgtcagggagtggggggacccggccataaagcaagagttttggctgaagcaatgagccaagtaacaaatccaactaccataatgatgcagagaggcaattttaggaaccaaagaaggattgttaagtgtttcaattgtggcaaagaagggcacatagccaaaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagattgtgtggagagacaggctaattttttagggaagatctggccttccaacaaggggaggccagggaatttttttcagagcagaccagagccaacagccccaccagaagagagcctcagggttggggaagagacaacaactccctctcagaagacggggcagatagacaaagaactgtatcccttaacttccctcagatcactctttggcagcgacccctcgtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatagctgggaaaaaattcggttaaggccagggggaaagaaaaaatatagattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctgttagaaacaccagagggctgtagacaaatactgggacagctacaaccatcccttcagacaggatcagaagaacttaagtcattatttaatacagtagcaaccctctattgtgtgcatcaaaggatagagataaaagacaccaaggaagcactagataggatagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaaag---------------------------------gcacagcaagcagcaact---------------------------------gacacagga------------------------------------------------------------------------------------------aacaacagtcag------------------gtcagtcaaaattaccctatagtgcagaatcttcaggggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtaatagaa---gagaaagctttcagcccagaagtaatacccatgttttcagcattgtcagaaggagccaccccacaagatttaaacaccatgctaaacacagtggggggacatcaggcagccatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagattgcatccagtacatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaaataggatggatgaca---------aataatccacctatc---ccagtgggagaaatctataaaagatggataatcctaggattaaataaaatagtaagaatgtatagtcctgtcagcattctggacataagacaaggaccaaaggaaccctttagagactatgtagaccggttctataaaactctaagagccgagcaagcttcacaggaagtaaaaaattggatgacagaaaccttgctagtc---caaaatgcgaacccagattgtaagactattttaaaagcattaggaccagcagctacactagaagaaatgatgtcagcatgtcagggagtggggggacccggccataaagcaagagttttggctgaagcaatg------------agccaagtaacaaat---------------------ccaactaccataatgatgcagaga---ggcaat---tttaggaac---caaaga---aggattgttaagtgtttcaattgtggcaaagaagggcacatagccaaaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgaaagattgtgtg---------gag---agacaggctaattttttagggaagatctgg---cct---tccaacaag---------ggg---aggccagggaatttttttcagagc------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagaa---gagagcctcagggttggg---------------gaagagacaacaactccctct------------------------cagaagacggggcag------------------------atagacaaa---------------------gaactgtat---------ccc---tta---acttccctcagatcactctttggcagcgacccctcgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,10rev,11fw,12rev","1fw,11fw","10rev,12rev",4,2,2
"EU735535",">Ref.39_BF.BR.04.04BRRJ179.EU735535","Ref","39_BF","BR","04","04BRRJ179","EU735535",139,2013,1,30,1477,1506,"atgggtgcgagagcgtcagtattaagcggc","ctctttggcaacgacccatcgtcacaataa",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagagcgtcagtattaagcggcggcgaattagatagatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagactaaaacatatagtatgggcaagcagggagctagaacgatttgcagtcaatcctggcctgttagaaacatcagaaggctgtagacaaataatagcacagctacaaccatcccttcagacaggatcggaagagcttagatcattatataatacaatagcagtcctctattatgtacatcaaaaggtagaggtaaaagacaccaaggaagctttagataagctagaggaagagcaaaacaaaagtaagaaaaaggcacagcaagcggcagctgacacaggaaacaacagtcaggtcagtcaaaattaccctatagtgcagaacctacaggggcaaatggtacatcagtccctatcacctagaactttaaatgcatgggtaaaagtaatagaagagaaagctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaatacagtggggggacatcaagcagctatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagattgcatccagtacatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaagtagcatggatgacaagtaatccacctgtcccagtgggagaaatctataaaagatggattatcttaggattaaataaaatagtaagaatgtatagtcctgtcagcattctggacataagacaaggaccaaaggaaccctttagagactatgtagaccggttctataaaactctaagagccgagcaagcttcccaggaggtaaaagcctggatgacagataccttgctggtccaaaatgcaaacccagattgtaagaccattttaaaagcattgggaccaggagctacactagaagaaatgatgacagcatgtcagggagtggggggacccagccataaagcaagagttttggctgaagcaatgagccaagcaaatcaaactaacataatggtgcagagaggcaattttaagccaagaaggactgttaagtgtttcaattgtggcaaagaagggcacatagccaaaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgctagactgtactgaaagacaggctaattttttagggaaaatctggccttccaacaaggggaggccagggaattttcttcagagcagaacagagccaacagccccaacagccccaccagcagagagcctaatgtttggggaggagacaacagctccctcccagaaacaggagccgagggacaaggaactgtatcctttaacctccctcagatcactctttggcaacgacccatcgtcacaataa","atgggtgcgagagcgtcagtattaagcggcggcgaattagatagatgggaaaaaattcggttaaggccagggggaaagaaaaaatatagactaaaacatatagtatgggcaagcagggagctagaacgatttgcagtcaatcctggcctgttagaaacatcagaaggctgtagacaaataatagcacagctacaaccatcccttcagacaggatcggaagagcttagatcattatataatacaatagcagtcctctattatgtacatcaaaaggtagaggtaaaagacaccaaggaagctttagataagctagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaaag---------------------------------gcacagcaagcggcagct---------------------------------gacacagga------------------------------------------------------------------------------------------aacaacagtcag------------------gtcagtcaaaattaccctatagtgcagaacctacaggggcaaatggtacatcagtccctatcacctagaactttaaatgcatgggtaaaagtaatagaa---gagaaagctttcagcccagaagtaatacccatgttttcagcattatcagaaggagccaccccacaagatttaaacaccatgctaaatacagtggggggacatcaagcagctatgcaaatgttaaaagagaccatcaatgaggaagctgcagaatgggatagattgcatccagtacatgcagggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaggaacaagtagcatggatgaca---------agtaatccacctgtc---ccagtgggagaaatctataaaagatggattatcttaggattaaataaaatagtaagaatgtatagtcctgtcagcattctggacataagacaaggaccaaaggaaccctttagagactatgtagaccggttctataaaactctaagagccgagcaagcttcccaggaggtaaaagcctggatgacagataccttgctggtc---caaaatgcaaacccagattgtaagaccattttaaaagcattgggaccaggagctacactagaagaaatgatgacagcatgtcagggagtggggggacccagccataaagcaagagttttggctgaagcaatg------------agccaagcaaat------------------------caaactaacataatggtgcagaga---ggcaat---tttaag------ccaaga---aggactgttaagtgtttcaattgtggcaaagaagggcacatagccaaaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaaggacaccaaatgctagactgtact---------gaa---agacaggctaattttttagggaaaatctgg---cct---tccaacaag---------ggg---aggccagggaattttcttcagagc------------------------------agaaca------gagccaacagcc---ccaacagcc---------------------------------------ccaccagca---gagagcctaatgtttggg---------------gaggagacaacagctccctcc------------------------cagaaacaggagccg------------------------agggacaag---------------------gaactgtat---------cct---tta---acctccctcagatcactctttggcaacgacccatcgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,3fw,4rev,5fw,6rev,7rev,10rev,11fw,12rev","1fw,3fw,5fw,11fw","4rev,6rev,7rev,10rev,12rev",9,4,5
"EU735538",">Ref.40_BF.BR.04.04BRRJ115.EU735538","Ref","40_BF","BR","04","04BRRJ115","EU735538",140,2013,1,30,1486,1515,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgaccagtagtcacagtta",1,30,1,30,1,30,1984,2013,1486,1515,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggagaattagataagtgggagaaaattcggctaagaccaggagggaagaaaaaatatcagttaaaacatatagtatgggcaagcagggaattagaacgattcgcagttaatcctggccttttagaaacatcagaaggctgtagacaaatactgaaacagctacaaccatcccttcagacaggatcagaagaacttaaatcattgtttaatacagtagcaaccctctattgtgtgcatcaaaggatagacataaaagacaccaaggaagctttagacaagatagaggaagagcaaaacaaaagtaagaaaatggcgcagcaggcagccgcagcagctgacacaggaaacagcagcaaggtcagccaaaattaccctatagtgcagaatctgcaggggcaaatggtacatcaggccctatcacctagaactttaaatgcatgggtaaaagtaatagaagagaaggctttcagcccggaagtaatacccatgttttcagcattatcagaaggagctaccccacaagatttaaacaccatgttaaatacagtagggggacatcaagcagctatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagactgcatccagtgcatgcagggcctatcccaccaggccagataagggaacctaggggaagtgatatagcaggatctactagtacccttcaggaacagatacaatggataacaggcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaaggaccaaaggaaccctttagagactatgtagacaggttctttaaaaccctaagagctgaacaagcttcacaggaagtaaaaaattggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagggttttggctgaggcaatgagtcaaataacaaatacagcaaatacagctgtcatgatgcagaaaagtaactttaagggccaaagaagaattgttaaatgttttaattgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaagtgtggaagagaaggacaccaaatgaaagattgtactgagagacaggctaattttttagggaaaatctggccttcccacaaggggaggccagggaatttccttcagaacaggctagagccgacagccccgccagcagagagctttgggttcggagaggagataacctcccctccgaagcgggagcagaaggaagagggactgtaccctcccttagcttccctcaaatcactctttggcaacgaccagtagtcacagtta","atgggtgcgagagcgtcagtattaagcgggggagaattagataagtgggagaaaattcggctaagaccaggagggaagaaaaaatatcagttaaaacatatagtatgggcaagcagggaattagaacgattcgcagttaatcctggccttttagaaacatcagaaggctgtagacaaatactgaaacagctacaaccatcccttcagacaggatcagaagaacttaaatcattgtttaatacagtagcaaccctctattgtgtgcatcaaaggatagacataaaagacaccaaggaagctttagacaagatagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaatg---------------------------------gcgcagcaggcagccgca---------------------------gcagctgacacagga------------------------------------------------------------------------------------------aacagcagcaag------------------gtcagccaaaattaccctatagtgcagaatctgcaggggcaaatggtacatcaggccctatcacctagaactttaaatgcatgggtaaaagtaatagaa---gagaaggctttcagcccggaagtaatacccatgttttcagcattatcagaaggagctaccccacaagatttaaacaccatgttaaatacagtagggggacatcaagcagctatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagactgcatccagtgcatgcagggcctatcccaccaggccagataagggaacctaggggaagtgatatagcaggatctactagtacccttcaggaacagatacaatggataaca---------ggcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaaggaccaaaggaaccctttagagactatgtagacaggttctttaaaaccctaagagctgaacaagcttcacaggaagtaaaaaattggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagggttttggctgaggcaatg------------agtcaaataacaaataca------------gca---aatacagctgtcatgatgcagaaa---agtaac---tttaagggc---caaaga---agaattgttaaatgttttaattgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaagtgtggaagagaaggacaccaaatgaaagattgtact---------gag---agacaggctaattttttagggaaaatctgg---cct---tcccacaag---------ggg---aggccagggaatttccttcagaac------------------------------aggcta------gagccgacagcc---------------------------------------------------ccgccagca---gagagctttgggttcgga---------------gaggagata---acctcccct------------------------ccgaagcgggagcag------------------------aaggaagag---------------------ggactgtac------cctccc---tta---gcttccctcaaatcactctttggcaacgaccagtagtcacagtta","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"EU735540",">Ref.40_BF.BR.04.04BRSQ46.EU735540","Ref","40_BF","BR","04","04BRSQ46","EU735540",141,2013,1,30,1477,1506,"atgggtgcgagagcgtcagtattaaacggg","ctctttggcaacgacccctagtcaaaatca",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagagcgtcagtattaaacgggggagaattagataaatgggaaaaaattcggttaagaccaggagggaagaaaaaatatagattaaaacatatagtatgggcaagcagggaattagaacgattcgcagttaatcctggccttttagagacagcagaaggctgtagacaaatactggaacagctacaaccatcccttcagacagggtcagaagaacttagatcattatttaatacagtagcagtcctctattgtgtgcatcaaaagatagagataaaagacaccaaggaagccctagaaaaaatagaggaagagcaaaacaaaagtaagaaaagggcgcagcaagcaaacgcagctgacgcaggaaccaacagcaaggtcgtcagccaaaactaccctatagtgcagaatctgcaggggcaaatggtacatcaggccctatcacctagaactttaaatgcatgggtaaaagtaatagaagagaaggctttcagcccggaagtaatacccatgttttcagcattatcagaaggagctaccccacaagatttaaacaccatgttaaatacagtagggggacatcaagcagctatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagactacatccagtgcatgcagggcctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgacaggcaacccacctgttccagtgggagaaatttataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccttaagagctgaacaagctacacaggaagtaaaaaattggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaggcaatgagtcaggtaacaaatacagctgtaatgatgcagaaaagtaactttaagggccaaagaaaaattgttaaatgttttaattgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagattgtactgagagacaggctaattttttagggaagatctggcctccctccaagggaaggccagggaatttcctccagaacaggccagagccaacagccccgccagcagagagctttggattcggagaggagataacctcccctcccaagcaggagcagaaaggcgagggactgtaccctcccttagcttccctcaaatcactctttggcaacgacccctagtcaaaatca","atgggtgcgagagcgtcagtattaaacgggggagaattagataaatgggaaaaaattcggttaagaccaggagggaagaaaaaatatagattaaaacatatagtatgggcaagcagggaattagaacgattcgcagttaatcctggccttttagagacagcagaaggctgtagacaaatactggaacagctacaaccatcccttcagacagggtcagaagaacttagatcattatttaatacagtagcagtcctctattgtgtgcatcaaaagatagagataaaagacaccaaggaagccctagaaaaaatagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaagg---------------------------------gcgcagcaagcaaacgca------------------------------gctgacgcagga------------------------------------------------------------------------------------------accaacagcaag---------------gtcgtcagccaaaactaccctatagtgcagaatctgcaggggcaaatggtacatcaggccctatcacctagaactttaaatgcatgggtaaaagtaatagaa---gagaaggctttcagcccggaagtaatacccatgttttcagcattatcagaaggagctaccccacaagatttaaacaccatgttaaatacagtagggggacatcaagcagctatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagactacatccagtgcatgcagggcctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgaca---------ggcaacccacctgtt---ccagtgggagaaatttataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccttaagagctgaacaagctacacaggaagtaaaaaattggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaggcaatg------------agtcaggtaaca------------------------aatacagctgtaatgatgcagaaa---agtaac---tttaagggc---caaaga---aaaattgttaaatgttttaattgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagattgtact---------gag---agacaggctaattttttagggaagatctgg---cct---ccctccaag---------gga---aggccagggaatttcctccagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccgccagca---gagagctttggattcgga---------------gaggagata---acctcccct------------------------cccaagcaggagcag------------------------aaaggcgag---------------------ggactgtac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccctagtcaaaatca","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,7rev,9fw,10rev,11fw,12rev","1fw,9fw,11fw","7rev,10rev,12rev",6,3,3
"EU735539",">Ref.40_BF.BR.05.05BRRJ200.EU735539","Ref","40_BF","BR","05","05BRRJ200","EU735539",142,2013,1,30,1477,1506,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccctagtcacaatta",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggagaattagataaatgggaaaaaattcggctaagaccaggggggaagaagaaatataaattaaaacatatagtatgggcaagcagggaattagaacgattcgcagttaatcctggccttttagaaacagcagagggctgtagacaaatactggaacagctacaaccatcccttcagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtacataaaaggatagaggtaaaagacaccaaggaagctttagacaaggtagaggaagagcaaaacaaaagtaagaaaagggcacagcaagcagccgcagctgacgcaggaaccaacagcaaggtcagccaaaattaccctatagtgcagaatctgcaggggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtaatagaagagaaggctttcagcccggaagtaatacccatgttttcagcattagcagaaggagctaccccgcaagatttaaacaccatgttaaatacagtagggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctacagaatgggacaggctacatccagtgcatgcagggcctattccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagcccagtcagtattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgaacaagctacacaggaagtaaaaaattggatgacagacaccttgttggtccaaaatgcaaacccagattgtaagaccattttaaaggcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaggcaatgagccaagtaacaaataatacagcagtaatgatgcagaaaagtaactttaagggccaaggaagaactgttaaatgttttaattgtggcaaagtaggacacatagccaaaaactgcagggcccctagaaaaaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagattgtgatatgagacaggctaattttttagggaaaatctggccttcccacaaggggaggccagggaatttcctccagaacaggccagagccaacagccccgccagcagagagctttgggttcggagaggagataaccccccctccgaagcgggagcagaaagacgagggactgtaccctcccttaacttccctcaaatcactctttggcaacgacccctagtcacaatta","atgggtgcgagagcgtcagtattaagcgggggagaattagataaatgggaaaaaattcggctaagaccaggggggaagaagaaatataaattaaaacatatagtatgggcaagcagggaattagaacgattcgcagttaatcctggccttttagaaacagcagagggctgtagacaaatactggaacagctacaaccatcccttcagacaggatcagaagaacttaaatcattatttaatacagtagcaaccctctattgtgtacataaaaggatagaggtaaaagacaccaaggaagctttagacaaggtagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaagg---------------------------------gcacagcaagcagccgca------------------------------gctgacgcagga------------------------------------------------------------------------------------------accaacagcaag------------------gtcagccaaaattaccctatagtgcagaatctgcaggggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtaatagaa---gagaaggctttcagcccggaagtaatacccatgttttcagcattagcagaaggagctaccccgcaagatttaaacaccatgttaaatacagtagggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctacagaatgggacaggctacatccagtgcatgcagggcctattccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagcccagtcagtattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgaacaagctacacaggaagtaaaaaattggatgacagacaccttgttggtc---caaaatgcaaacccagattgtaagaccattttaaaggcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagagttttggctgaggcaatg------------agccaagtaacaaat---------------------aatacagcagtaatgatgcagaaa---agtaac---tttaagggc---caagga---agaactgttaaatgttttaattgtggcaaagtaggacacatagccaaaaactgcagggcccctagaaaaaagggctgttggaaatgtggaaaagaaggacaccaaatgaaagattgtgat---------atg---agacaggctaattttttagggaaaatctgg---cct---tcccacaag---------ggg---aggccagggaatttcctccagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccgccagca---gagagctttgggttcgga---------------gaggagata---accccccct------------------------ccgaagcgggagcag------------------------aaagacgag---------------------ggactgtac------cctccc---tta---acttccctcaaatcactctttggcaacgacccctagtcacaatta","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"EU170155",">Ref.42_BF.LU.03.luBF_05_03.EU170155","Ref","42_BF","LU","03","luBF_05_03","EU170155",143,2013,0,27,1481,1510,"gggtgcgagagcgtcggtattaagcgg","ctctttggcaacgacccctcgtcacaataa",1,30,0,27,1,30,1984,2013,1481,1510,1984,2013,"gggtgcgagagcgtcggtattaagcgggggagaattagatagatgggaaaaaattcggttaaggccagggggaaagaaaaaatataaattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctattagaaacatcagagggctgcagacaaatactgggacagctacaaccagcccttcagacaggatcagaagaacttaaatcattatataatacagtagcaaccctctattgtgtacatcaaaagatagatgtaagagacaccaaggaagctttagacaagatagaggaagagcaaaacaaaagtaagaaaaargcacagcaagcagcagctgacacaggaaacagcaaccaggtcagccaaaattaccctatagtacagaacctccaggggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaggtggtagaagagaaggcttttagcccagaagtaatacccatgttttcagcattagcagaaggagccaccccacaagatttaaacaccatgctaaayacagtggggggacatcaagcagccatgcaaatgttaaaggacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcagggcctatcccaccagggcagatgagggaacctaggggaagtgatatagctggaactactagtaaccttcaggagcaaatacaatggatgacaagtaacccacctgtcccagtgggagagatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcatcttggacataagacaagggccaaargaaccctttagagactatgtagacaggttctttaagaccttaagagctgagcaagctacacaggaagtaaagggttggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggagggcctggccataaggcaagagttttggctgaggcaatgagccaggcaacaggtacagctgtactgatgcagagaagtaactttaagggcccaagaaaaattgttaaatgttttaactgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagagggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatctggccttcctacaaggggaggcccggaaatttcctccagaacaggccagagccaaggccagagccaacagccccgccagcagagagctttgggttcggagaggagataaccccctctctgaagcaggagcagaaagacgagggtccgtaccctcccttaacttccctcagatcactctttggcaacgacccctcgtcacaataa","--gggtgcgagagcgtcggtattaagcgggggagaattagatagatgggaaaaaattcggttaaggccagggggaaagaaaaaatataaattaaaacatatagtatgggcaagcagggagctagaacgattcgcagttaatcctggcctattagaaacatcagagggctgcagacaaatactgggacagctacaaccagcccttcagacaggatcagaagaacttaaatcattatataatacagtagcaaccctctattgtgtacatcaaaagatagatgtaagagacaccaaggaagctttagacaagatagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaaar---------------------------------gcacagcaagcagcagct---------------------------------gacacagga------------------------------------------------------------------------------------------aacagcaaccag------------------gtcagccaaaattaccctatagtacagaacctccaggggcaaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaggtggtagaa---gagaaggcttttagcccagaagtaatacccatgttttcagcattagcagaaggagccaccccacaagatttaaacaccatgctaaayacagtggggggacatcaagcagccatgcaaatgttaaaggacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcagggcctatcccaccagggcagatgagggaacctaggggaagtgatatagctggaactactagtaaccttcaggagcaaatacaatggatgaca---------agtaacccacctgtc---ccagtgggagagatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcatcttggacataagacaagggccaaargaaccctttagagactatgtagacaggttctttaagaccttaagagctgagcaagctacacaggaagtaaagggttggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggagggcctggccataaggcaagagttttggctgaggcaatg------------agccaggcaaca------------------------ggtacagctgtactgatgcagaga---agtaac---tttaagggc---ccaaga---aaaattgttaaatgttttaactgtggcaaagaaggacacatagccaaaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagagggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatctgg---cct---tcctacaag---------ggg---aggcccggaaatttcctccagaacaggcca------------------gagccaaggcca------gagccaacagcc---------------------------------------------------ccgccagca---gagagctttgggttcgga---------------gaggagata---accccctct------------------------ctgaagcaggagcag------------------------aaagacgag---------------------ggtccgtac------cctccc---tta---acttccctcagatcactctttggcaacgacccctcgtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","4rev,7rev,10rev,11fw,12rev","11fw","4rev,7rev,10rev,12rev",5,1,4
"EU697904",">Ref.43_02G.SA.03.J11223.EU697904","Ref","43_02G","SA","03","J11223","EU697904",144,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgacccctggtcaaagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattcggttgagrccagggggaaagaaaaaatatagaatgaaacatytagtatgggcaagcagggagctggaaagatttgcaattaaccctggtcttttagaatcagcagaaggatgtcaacaaataatggaacagytmcartcaactcttaggacaggatcagaagaacttaaatcattatttaatacaatagcmaccctttggtgygtacatcaaagaatagacataaaagacaccaaggaagccttagataaagtagaggaaatgcaaaataagagcaaacaaaagacacagcaggcagcagctgccacaggaagcagcagccaaaattatcctatagtgcagaatgcacaagggcaaatggtacatcagtccttatcacctaggactttaaatgcatgggtaaaagtaatagaggaaaaggccttcagtccagaagtaatacccatgtttacagcattatcagagggagccaccccacaagayttaaataccatgctaaacacagtgggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaagaagctgcagaatgggataggctacatccaccacaggcagggcctattccaccaggtcagataagagaaccaaggggaagtgatatagcaggaactactagtaccctgcaggaacaaatwacatggatgaccagcaacccacctatcccagtgggagaactttataaaagatggataattctggggttaaataaaatagtaagaatgtatagcccagtcagcattttggacataaaacaaggaccaaaagaacccttcagagattatgtagataggttctttaaaactttgagagctgagcaagccacacaggatgtaaaaaattggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaacatcctaagagcattaggatcaggggctacactagaagaaatgatgacagcatgtcaaggagtgggaggacccagccacaaggcaagggttttagctgaggcaatgagccaggcatcaggtgcagcagcagccataatgatgcagaaaggcaattttaagggcccaagaagaaatattaagtgttttaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcacagaaagacaggctaattttttagggaaaatttggccttcccacaaggggaggccagggaacttccttcagagcaggccagagccaacagccccacctgcagagagcttcgggttcggagaggagatagctccctcccagaagcaggagccgagggagaaggaatcacctccattagcctccctcaaatcactctttggcaacgacccctggtcaaagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatgcatgggagaaaattcggttgagrccagggggaaagaaaaaatatagaatgaaacatytagtatgggcaagcagggagctggaaagatttgcaattaaccctggtcttttagaatcagcagaaggatgtcaacaaataatggaacagytmcartcaactcttaggacaggatcagaagaacttaaatcattatttaatacaatagcmaccctttggtgygtacatcaaagaatagacataaaagacaccaaggaagccttagataaagtagaggaaatgcaa------------aat---------------------aag---------------agcaaa------caaaag---------------------------------acacagcaggcagcagct---------------------------------gccacagga------------------------------------------------------------------------------------------------agc---------------------agcagccaaaattatcctatagtgcagaatgcacaagggcaaatggtacatcagtccttatcacctaggactttaaatgcatgggtaaaagtaatagag---gaaaaggccttcagtccagaagtaatacccatgtttacagcattatcagagggagccaccccacaagayttaaataccatgctaaacacagtgggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaagaagctgcagaatgggataggctacatccaccacaggcagggcctattccaccaggtcagataagagaaccaaggggaagtgatatagcaggaactactagtaccctgcaggaacaaatwacatggatgacc---------agcaacccacctatc---ccagtgggagaactttataaaagatggataattctggggttaaataaaatagtaagaatgtatagcccagtcagcattttggacataaaacaaggaccaaaagaacccttcagagattatgtagataggttctttaaaactttgagagctgagcaagccacacaggatgtaaaaaattggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaacatcctaagagcattaggatcaggggctacactagaagaaatgatgacagcatgtcaaggagtgggaggacccagccacaaggcaagggttttagctgaggcaatg------------agccaggcatcaggtgca------------------gcagcagccataatgatgcagaaa---ggcaat---tttaagggc---ccaaga---agaaatattaagtgttttaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagactgcaca---------gaa---agacaggctaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggccagggaacttccttcagagc------------------------------aggcca------gagccaacagcc---------------------------------------------------ccacctgca---gagagcttcgggttcgga---------------gaggagata---gctccctcc------------------------cagaagcaggagccg------------------------agggagaag---------------------gaatcacct---------cca---tta---gcctccctcaaatcactctttggcaacgacccctggtcaaagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,7rev,12rev","1fw","7rev,12rev",3,1,2
"EU697907",">Ref.43_02G.SA.03.J11243.EU697907","Ref","43_02G","SA","03","J11243","EU697907",145,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccatggtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagaaaattcggctgaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagtgagctggaaagattcgcacttaaccctggccttttagaatcagcagaaggatgtcagcaactaatggaacagttacaatcaaatctcaggacaggatcagaagaacttaaatcattatttaatacaatagcaaccctttggtgtgtacatcaaagaatagacataaaagacaccaaggaagccttagataaagtagaggaagcaaaaaagaaaagcaaacaaaagacacagcaggaagcagctgccacaggaaactgcagccaaaattttcctatagtgcagaatgcacaagggcaaatggtacatcagtctttatcacctaggactttaaatgcatgggtaaaagtaatagaagaaaaggccttcagtccagaagtaatacccatgtttacagcattatcagagggagccaccccacaagatttgaataccatgctaaacaccgtgggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaagaagctgcagagtgggatagactacatccacaacaggcagggcctattccaccaggtcagataagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataacatggatgaccgcaaacccacctatcccagtgggagaaatttataaaagatggatcattctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaacccttcagagattatgtagatagrttctttaaaactttgagagctgagcaagccacacaggatgtaaaaaactggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccatcctaagagcattaggagcaggagcttcactagaagaaatgatgacagcatgtcaaggagtgggaggacccagccacaaagcaagagttttagctgaggcaatgagccaggcatcaggtgcagcagcagccataatgatgcagaaaggcaattttaagggcccaagaagaaatattaagtgttttaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagaatgcacagagagacaggctaattttttagggaaaatttggccttcccacaaggggaggccagggaattttcttcagagcaggccagagccatcagccccacccgcagagagcttcgggttcggagaggagacagccccctctccgaagcaggagccgarggagaaggartcacctccattagcctccctcaaatcactctttggcaacgacccatggtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagaaaattcggctgaggccagggggaaagaaaaaatatagaatgaaacatttagtatgggcaagcagtgagctggaaagattcgcacttaaccctggccttttagaatcagcagaaggatgtcagcaactaatggaacagttacaatcaaatctcaggacaggatcagaagaacttaaatcattatttaatacaatagcaaccctttggtgtgtacatcaaagaatagacataaaagacaccaaggaagccttagataaagtagaggaagcaaaa------------aag---------------------aaa---------------agcaaa------caaaag---------------------------------acacagcaggaagcagct---------------------------------gccacagga---------------------------------------------------------------------------------------------------aac------------------tgcagccaaaattttcctatagtgcagaatgcacaagggcaaatggtacatcagtctttatcacctaggactttaaatgcatgggtaaaagtaatagaa---gaaaaggccttcagtccagaagtaatacccatgtttacagcattatcagagggagccaccccacaagatttgaataccatgctaaacaccgtgggggggcatcaagcagctatgcaaatgctaaaggatactatcaatgaagaagctgcagagtgggatagactacatccacaacaggcagggcctattccaccaggtcagataagagaaccaaggggaagtgatatagcaggaactactagtacccttcaggaacaaataacatggatgacc---------gcaaacccacctatc---ccagtgggagaaatttataaaagatggatcattctgggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaacccttcagagattatgtagatagrttctttaaaactttgagagctgagcaagccacacaggatgtaaaaaactggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccatcctaagagcattaggagcaggagcttcactagaagaaatgatgacagcatgtcaaggagtgggaggacccagccacaaagcaagagttttagctgaggcaatg------------agccaggcatcaggtgca------------------gcagcagccataatgatgcagaaa---ggcaat---tttaagggc---ccaaga---agaaatattaagtgttttaactgtggcaaggaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggagggacatcaaatgaaagaatgcaca---------gag---agacaggctaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggccagggaattttcttcagagc------------------------------aggcca------gagccatcagcc---------------------------------------------------ccacccgca---gagagcttcgggttcgga---------------gaggagaca---gccccctct------------------------ccgaagcaggagccg------------------------arggagaag---------------------gartcacct---------cca---tta---gcctccctcaaatcactctttggcaacgacccatggtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"EU697909",">Ref.43_02G.SA.03.J11456.EU697909","Ref","43_02G","SA","03","J11456","EU697909",146,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagtggg","ctctttggcaacgacccttagtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagtgggggaaaattagatacatgggagaaaattcggttgaggccagggggaaagaaaaaatataaaatgaaacatctaatttgggcaagcagggagctggaaagattcgcacttaaccctggccttttagaatcagcagaaggatgtcagcaactgatggaacagttacaatcaactctcaaggcaggatcagaagaaattaaatcattatttaatacaatagtaaccctttggtgcgtacatcaaaggatagacataagagataccaaggaagccttagataarttagaggaaatacaaaataagagcaaacaaaagacacagcagacagcagctgccacaggaagtggcagccaaaattatcctatagtgcagaatgcacaagggcaaatggtacaccagcccatatcacctaggactttaaatgcatgggtaaaagtaatagaagaaaaggcctttagtccagaagtaatacccatgtttacagcattatcagagggagccaccccacaagatttgaataccatgytaaacacygtgggggggcatcaagcagctatgcagatgctaaaggatactatcaatgaagaagctgcagagtgggataggctacatccacaacaggcagggcctattccaccaggtcagataagagagccaaggggaagtgatatagcaggaactactagtaacctgcaggaacaaataacatggatgaccaacaacccacctatcccagtgggagaaatttataaaagatggataatcctggggttaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaacccttcagagattatgtagataggttctttaaaactttgagagctgagcaagccacacaggatgtaaaaaactggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaacatcctaagagcattaggaacgggagctacactagaagaaatgatgacagcatgtcaaggagtgggaggacccagccacaaagcaagagttttagctgaggcaatgagtcaggcatcaggtgcagcagcagccataatgatgcagaaaagcaattttaagggcccaagaaaaattattaagtgttttaactgtggcaaggaaggacacctagccagaaattgcagggcccccaggaaaaagggctgttggaaatgtggaagggagggacatcaaatgaaagactgcacagagagacaggctaattttttaggraaaatttggccttcccacaaggggaggccagggaattttcttcaraacaggccagagccaacagccccacccgcagagagcttcgggttcggagaggagatagcctcctccccgaagcaggagccgagggaggagaaatcacctccattagcctccctcaaatcactctttggcaacgacccttagtcacagtaa","atgggtgcgagagcgtcagtattaagtgggggaaaattagatacatgggagaaaattcggttgaggccagggggaaagaaaaaatataaaatgaaacatctaatttgggcaagcagggagctggaaagattcgcacttaaccctggccttttagaatcagcagaaggatgtcagcaactgatggaacagttacaatcaactctcaaggcaggatcagaagaaattaaatcattatttaatacaatagtaaccctttggtgcgtacatcaaaggatagacataagagataccaaggaagccttagataarttagaggaaatacaa------------aat---------------------aag---------------agcaaa------caaaag---------------------------------acacagcagacagcagct---------------------------------gccacagga------------------------------------------------------------------------------------------------agt---------------------ggcagccaaaattatcctatagtgcagaatgcacaagggcaaatggtacaccagcccatatcacctaggactttaaatgcatgggtaaaagtaatagaa---gaaaaggcctttagtccagaagtaatacccatgtttacagcattatcagagggagccaccccacaagatttgaataccatgytaaacacygtgggggggcatcaagcagctatgcagatgctaaaggatactatcaatgaagaagctgcagagtgggataggctacatccacaacaggcagggcctattccaccaggtcagataagagagccaaggggaagtgatatagcaggaactactagtaacctgcaggaacaaataacatggatgacc---------aacaacccacctatc---ccagtgggagaaatttataaaagatggataatcctggggttaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaacccttcagagattatgtagataggttctttaaaactttgagagctgagcaagccacacaggatgtaaaaaactggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaacatcctaagagcattaggaacgggagctacactagaagaaatgatgacagcatgtcaaggagtgggaggacccagccacaaagcaagagttttagctgaggcaatg------------agtcaggcatcaggtgca------------------gcagcagccataatgatgcagaaa---agcaat---tttaagggc---ccaaga---aaaattattaagtgttttaactgtggcaaggaaggacacctagccagaaattgcagggcccccaggaaaaagggctgttggaaatgtggaagggagggacatcaaatgaaagactgcaca---------gag---agacaggctaattttttaggraaaatttgg---cct---tcccacaag---------ggg---aggccagggaattttcttcaraac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccacccgca---gagagcttcgggttcgga---------------gaggagata---gcctcctcc------------------------ccgaagcaggagccg------------------------agggag------------------------gagaaatca------cctcca---tta---gcctccctcaaatcactctttggcaacgacccttagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,9fw,10rev,11fw,12rev","1fw,9fw,11fw","4rev,10rev,12rev",6,3,3
"FJ358521",">Ref.44_BF.CL.00.CH80.FJ358521","Ref","44_BF","CL","00","CH80","FJ358521",147,2013,1,30,1477,1506,"atgggtgcgagagcgtcaatattaagcggg","ctctttggcaacgacccctagtcaaaataa",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagagcgtcaatattaagcgggggaaaattagatgcatgggaaaaaattcgattaagaccagggggaaagaaaaaatatagaatgaagcatctaatatgggcaagcagggagctagaacgatttgcagttgatcctggccttctagaaacaccagaaggctgtcgaaaaataataggacaactacaaccatcccttcagacaggatcagaagagcttagatcattgtataatacagtagtagtcctctattttgtacatcaaagggtagaggtaaaggacacaaaggaagctttagagaagctagaggaagaacaaaacaaaagtcagcaaaaggcacagcaaaagacacagcaagcggccgctgccgctgacaaaggggtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacatcaggctctatcacctaggactttaaatgcatgggtaaaggtggtagaagagaaggcttttagcccagaagtaatacccatgtttacagcattatcagagggagccactccacaagatttaaacaccatgttaaatacagtggggggccatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagagtacatccagtgcatgcaggacctgccccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaataggatggatgacaagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctaccagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaagctacacaggaagtaaagaattggatgacagacaccttgttggtccaaaatgcgaacccagattgtaaaaccattctaagagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagggtgttggctgaggcaatgagtcaagtaacaaatacagctgtaatgatgcagaaaagtaactttaagggccaaagaagaattgttaaatgtttcaattgtggcaaagaaggacacatagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaagaaggacatcaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccaacaaggggaggccaggaaatttccctcagaacagactagagccaacagccccaccagcagagagctttgggttcggagaggagataaccccttctccgaagcaggagcagaaggacgagggaaagtaccctccctttgcttccctcaaatcactctttggcaacgacccctagtcaaaataa","atgggtgcgagagcgtcaatattaagcgggggaaaattagatgcatgggaaaaaattcgattaagaccagggggaaagaaaaaatatagaatgaagcatctaatatgggcaagcagggagctagaacgatttgcagttgatcctggccttctagaaacaccagaaggctgtcgaaaaataataggacaactacaaccatcccttcagacaggatcagaagagcttagatcattgtataatacagtagtagtcctctattttgtacatcaaagggtagaggtaaaggacacaaaggaagctttagagaagctagaggaagaacaa------------aac---------------------aaa---------------agtcag------caaaag---------------gcacagcaaaag------acacagcaagcggccgct---------------------------gccgctgacaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacatcaggctctatcacctaggactttaaatgcatgggtaaaggtggtagaa---gagaaggcttttagcccagaagtaatacccatgtttacagcattatcagagggagccactccacaagatttaaacaccatgttaaatacagtggggggccatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagagtacatccagtgcatgcaggacctgccccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaataggatggatgaca---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctaccagcattttggacataagacaagggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgagcaagctacacaggaagtaaagaattggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaaaaccattctaagagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagggtgttggctgaggcaatg------------agtcaagtaaca------------------------aatacagctgtaatgatgcagaaa---agtaac---tttaagggc---caaaga---agaattgttaaatgtttcaattgtggcaaagaaggacacatagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaagaaggacatcaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccaggaaatttccctcagaac------------------------------agacta------gagccaacagcc---------------------------------------------------ccaccagca---gagagctttgggttcgga---------------gaggagata---accccttct------------------------ccgaagcaggagcag------------------------aaggacgag---------------------ggaaagtac------cctccc---ttt---gcttccctcaaatcactctttggcaacgacccctagtcaaaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"FN392874",">Ref.45_cpx.CD.97.97CD_MBFE185.FN392874","Ref","45_cpx","CD","97","97CD_MBFE185","FN392874",148,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccgttgtcacagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagagaattcgtttaaggccagggggaaagaaacaatataaaytraaacatatcgtatgggcaagcagggagctggaaagattcgcacttaaccctagccttttagaaacagcagaaggatgtcagcaaataatagaacagttacaaccagctctcaagacaggatcagaagaatttacatcattatataatacagtagcaaccctctattgtgtacatcaaaggatagacataaaagacaccmaggaagctttagataaaatamaggaaatacaaaataagagcaagcaaaagacgcagcaggcagcagctgccacaggaaacagcagccagatcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaggccatatcacctagaactttgaatgcatgggtgaaagtaatagaagaaaaggctttcagcccagaagtaatacccatgttcwcagcattatcagaaggagccaccccacaagatttaaatatgatgctgaacatagttggaggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggctacatccagtacatgcagggcctgytccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcargaacaaataggctggatgacaagcaacccacctatcccagtgggagacatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagtcctgtcagcattttagacataaggcaagggccaaaagaacccttcagggactatgtagataggttctttaaaactcttagagctgagcaagctacacaggaagtaaaaaattggatgacagaaaccttgctggttcaaaatgcaaatccagactgtaaaaccatcttaagagcattaggaccaggggctacattagaagaaatgatgacagcatgccaaggagtaggaggacctggtcataaagcaagggttttggctgaagcaatgagtcaggtacaaaatacaaacataatgatgcaaaaaagcaattttargggccaaaaaagaattaagtgtttcaactgtggcaaagagggacatctagccagaaattgtagggcccctaggaaaaagggctgttggaagtgtgggaaggaaggacaycaaatgaaagactgcactgagagacaggctaattttttagggaaaatytggccttccagcaaagggaggccagggaactttcctcagrgcagaccggagccatcagccccaccagcagagctcttcggaatgagggargagataacctcccctccgaagcaggagcagaaggacagggaacagcctcccttaatttccctcaaatcactctttggcaacgacccgttgtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagagaattcgtttaaggccagggggaaagaaacaatataaaytraaacatatcgtatgggcaagcagggagctggaaagattcgcacttaaccctagccttttagaaacagcagaaggatgtcagcaaataatagaacagttacaaccagctctcaagacaggatcagaagaatttacatcattatataatacagtagcaaccctctattgtgtacatcaaaggatagacataaaagacaccmaggaagctttagataaaatamaggaaatacaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------acgcagcaggcagcagct---------------------------------gccacagga------------------------------------------------------------------------------------------aacagcagccag------------------atcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaggccatatcacctagaactttgaatgcatgggtgaaagtaatagaa---gaaaaggctttcagcccagaagtaatacccatgttcwcagcattatcagaaggagccaccccacaagatttaaatatgatgctgaacatagttggaggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggacaggctacatccagtacatgcagggcctgytccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcargaacaaataggctggatgaca---------agcaacccacctatc---ccagtgggagacatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagtcctgtcagcattttagacataaggcaagggccaaaagaacccttcagggactatgtagataggttctttaaaactcttagagctgagcaagctacacaggaagtaaaaaattggatgacagaaaccttgctggtt---caaaatgcaaatccagactgtaaaaccatcttaagagcattaggaccaggggctacattagaagaaatgatgacagcatgccaaggagtaggaggacctggtcataaagcaagggttttggctgaagcaatg------------agtcaggtacaa------------------------aatacaaacataatgatgcaaaaa---agcaat---tttargggc---caaaaa---aga---attaagtgtttcaactgtggcaaagagggacatctagccagaaattgtagggcccctaggaaaaagggctgttggaagtgtgggaaggaaggacaycaaatgaaagactgcact---------gag---agacaggctaattttttagggaaaatytgg---cct---tccagcaaa---------ggg---aggccagggaactttcctcagrgc------------------------------agaccg------gagccatcagcc---------------------------------------------------ccaccagca---gagctcttcggaatgagg---------------gargagata---acctcccct------------------------ccgaagcaggagcag------------------------aaggacagg---------------------gaacagcct---------ccc---tta---atttccctcaaatcactctttggcaacgacccgttgtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"FN392876",">Ref.45_cpx.CM.97.97CM_MP814.FN392876","Ref","45_cpx","CM","97","97CM_MP814","FN392876",149,2013,1,30,1468,1497,"atgggggcgagagcgtcagtattaagcggg","ctctttggcaacgacccattrtcacagtaa",1,30,1,30,1,30,1984,2013,1468,1497,1984,2013,"atgggggcgagagcgtcagtattaagcgggggaaaattagataaatgggagaaaattcggttaaggccagggggaaagaaacaatataaactgaaacatctagtatgggcaagcagagagttggaaagattcgcaattaaccctggccttttagaaacaggggaaggatgtcaacaaataatagaacagttacaaccaactctcaagacaggatcagaagaatttagatcattatataatacaatagcagtcctctattgtgtacatcaaaggatagatgtaaaagacaccaaggaagctgtagataagatagaggaaatacaaaataagagcaagcaaaagacacagcaggcagcagctgacacaagaagcagcagcagtatcagtcagaattatcccatagtgcaaaatgcacaagggcaaatggtacatcaggcaatgtcacctaggactttaaatgcatgggtgaaagtaatagaagaaaaggctttcagcccagaggtaatacccatgttcacagcattatcagagggagccaccccacaagatttaaatatgatgctgaacatagttggaggacaccaagcagctatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagggtacatccagtacatgcagggcctgcyccaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaagaccaaataggatggatgacaagcaatccacctatcccagtgggagagatctataaaagatggatagtcctgggattaaataagatagtaagaatgtatagccctgtcagtattttggatataagacaagggccaaaggaacccttcagggactatgtagataggttctttaaaactctcagagctgagcaagctacacaggatgtaaaaaattggatgacagagaccttgctggtccaaaatgcgaatccagactgtaagaccattttaagagcattaggaccaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacctggccataaagcaagggttttggctgaagcaatgagtcaaatacaaaatacaaacataatgatgcagagaggcaattttaagggccagaaaagaattaagtgtttcaactgtggcaaagaaggrcacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggagtgaaggacatcaaatgaaagactgcactgagagacaggctaattttttagggagaatttggccttccagcaaagggaggccaggaaacttycatcaaaacagactggagccatcagccccaccagcagagaactttgggaygagggaagagatacccttctccccgaagcaggggcagaaggacagggaacagccccttccttcagtttccctcaaatcactctttggcaacgacccattrtcacagtaa","atgggggcgagagcgtcagtattaagcgggggaaaattagataaatgggagaaaattcggttaaggccagggggaaagaaacaatataaactgaaacatctagtatgggcaagcagagagttggaaagattcgcaattaaccctggccttttagaaacaggggaaggatgtcaacaaataatagaacagttacaaccaactctcaagacaggatcagaagaatttagatcattatataatacaatagcagtcctctattgtgtacatcaaaggatagatgtaaaagacaccaaggaagctgtagataagatagaggaaatacaa------------aat---------------------aag---------------agcaag------caaaag---------------------------------acacagcaggcagcagct---------------------------------gacacaaga------------------------------------------------------------------------------------------agcagcagcagt------------------atcagtcagaattatcccatagtgcaaaatgcacaagggcaaatggtacatcaggcaatgtcacctaggactttaaatgcatgggtgaaagtaatagaa---gaaaaggctttcagcccagaggtaatacccatgttcacagcattatcagagggagccaccccacaagatttaaatatgatgctgaacatagttggaggacaccaagcagctatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagggtacatccagtacatgcagggcctgcyccaccaggccagatgagagaaccaaggggaagtgatatagcaggaactactagtacccttcaagaccaaataggatggatgaca---------agcaatccacctatc---ccagtgggagagatctataaaagatggatagtcctgggattaaataagatagtaagaatgtatagccctgtcagtattttggatataagacaagggccaaaggaacccttcagggactatgtagataggttctttaaaactctcagagctgagcaagctacacaggatgtaaaaaattggatgacagagaccttgctggtc---caaaatgcgaatccagactgtaagaccattttaagagcattaggaccaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacctggccataaagcaagggttttggctgaagcaatg------------agtcaaatacaa------------------------aatacaaacataatgatgcagaga---ggcaat---tttaagggc---cagaaa---aga---attaagtgtttcaactgtggcaaagaaggrcacctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggagtgaaggacatcaaatgaaagactgcact---------gag---agacaggctaattttttagggagaatttgg---cct---tccagcaaa---------ggg---aggccaggaaacttycatcaaaac------------------------------agactg------gagccatcagcc---------------------------------------------------ccaccagca---gagaactttgggaygagg---------------gaagagata---cccttctcc------------------------ccgaagcaggggcag------------------------aaggacagg---------------------gaacagccc------cttcct---tca---gtttccctcaaatcactctttggcaacgacccattrtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,10rev,12rev","1fw","10rev,12rev",3,1,2
"FN392877",">Ref.45_cpx.GA.97.97GA_TB45.FN392877","Ref","45_cpx","GA","97","97GA_TB45","FN392877",150,2013,1,30,1474,1503,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccattgttacaataa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaactagatgcatgggagaaaattcggttaaggccagggggaaagaaacaatatacaatgaagcatctagtatgggcaagcagagagctggaaagatttgcaattaaccctagcctgttagaaacagcagaaggatgtcaacaaataattgaacagatacaaccaacycttaaracagggtyagaagaacttagatcattgtttaatacagtagcaactctctattgtgtacatcaaaggataaaggtaaaagacaccaaggaagctctagataaaatagaggaattacaaaataagagcaagcagaagacacagcaggcagcagctgccacaggaaatagcagcggtatcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaagccgtaacacctaggactttgaatgcatgggtaaaggtagtagaagaaaaggctttcagtccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatttaaatatgatgctgaacatagttggaggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagytgcagaatgggacaggacacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagagcaaataggatggatgacaagcaacccacctgtcccagtgggagacatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattctggacataagacaagggccaaaagaacccttcagggactacgtagataggttctttaaaactctcagagctgagcaagcttcacaggatgtaaaaaattggatgacagacaccttattagtccaaaatgcaaatccagactgtaagaccattttaaaagcattagggccaggggccacattagaagaaatgatgacagcatgtcaggcagtgggaggacctggccataaagcaagagttttggctgaagcaatgagtcaagtacaaaatgtaaacataatgatgcagaaaagcaattttaagggccagaaaagaattaagtgtttcaactgtggcaaagagggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaagtgtgggaaagaaggacaccaaatgaaagactgcagtgaaagacaggctaattttttagggaaaatttggccttccaacaaagggaggccaggaaactttcctcagagcagaccagagccatcagccccgccagcagagagcttcgggatgagggaagagatatcctcctccccgaagcaggagctgaaggacagggaacaggcccagccycctcctttgatttccctcaaatcactctttggcaacgacccattgttacaataa","atgggtgcgagagcgtcagtattaagcgggggaaaactagatgcatgggagaaaattcggttaaggccagggggaaagaaacaatatacaatgaagcatctagtatgggcaagcagagagctggaaagatttgcaattaaccctagcctgttagaaacagcagaaggatgtcaacaaataattgaacagatacaaccaacycttaaracagggtyagaagaacttagatcattgtttaatacagtagcaactctctattgtgtacatcaaaggataaaggtaaaagacaccaaggaagctctagataaaatagaggaattacaa------------aat---------------------aag---------------agcaag------cagaag---------------------------------acacagcaggcagcagct---------------------------------gccacagga------------------------------------------------------------------------------------------aatagcagcggt------------------atcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaagccgtaacacctaggactttgaatgcatgggtaaaggtagtagaa---gaaaaggctttcagtccagaagtaatacccatgttctcagcattatcagagggagccaccccacaagatttaaatatgatgctgaacatagttggaggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagytgcagaatgggacaggacacatccagtacatgcagggcctattccaccaggccagatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagagcaaataggatggatgaca---------agcaacccacctgtc---ccagtgggagacatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgtcagcattctggacataagacaagggccaaaagaacccttcagggactacgtagataggttctttaaaactctcagagctgagcaagcttcacaggatgtaaaaaattggatgacagacaccttattagtc---caaaatgcaaatccagactgtaagaccattttaaaagcattagggccaggggccacattagaagaaatgatgacagcatgtcaggcagtgggaggacctggccataaagcaagagttttggctgaagcaatg------------agtcaagtacaa------------------------aatgtaaacataatgatgcagaaa---agcaat---tttaagggc---cagaaa---aga---attaagtgtttcaactgtggcaaagagggacacctagccagaaattgcagggcccctaggaaaaagggctgttggaagtgtgggaaagaaggacaccaaatgaaagactgcagt---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacaaa---------ggg---aggccaggaaactttcctcagagc------------------------------agacca------gagccatcagcc---------------------------------------------------ccgccagca---gagagcttcgggatgagg---------------gaagagata---tcctcctcc------------------------ccgaagcaggagctg------------------------aaggacagg---------------------gaacaggcccagccycctcct---ttg---atttccctcaaatcactctttggcaacgacccattgttacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,7rev,10rev,11fw,12rev","1fw,11fw","4rev,7rev,10rev,12rev",6,2,4
"DQ358801",">Ref.46_BF.BR.01.01BR087.DQ358801","Ref","46_BF","BR","01","01BR087","DQ358801",151,2013,1,30,1489,1518,"atgggtgcgagagcgtcagtattaagcggc","ctctttggcaacgacccttagttacaataa",1,30,1,30,1,30,1984,2013,1489,1518,1984,2013,"atgggtgcgagagcgtcagtattaagcggcggaaaattagatgcatgggaaagaattcggttaaggccggggggaaagaaaaaatatcaaatgaagcatctaatatgggcaagcagggagctagaacgatttgcacttaatcctggccttctagaaacatcagaaggctgtagaaaaataatagcacagctacaaccatcccttcagacaggaacagaggagcttagatcattatttaatacagtagcagtcctctattatgtacatcaaaaggaagatgtaaaagataccaaggaagctttagagaagctagagaaagaacaaaacagaagtcagcaaaagacacagcaagcacaagcggcagcagctgagaaaggggtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacaccagtctttatcacctagaactttaaatgcatgggtaaaggtgatagaagagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccaccccacaagatttaaacacaatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgatgaagctgcagaatgggacagattacatccagtacatgcagggcctatcccaccaggtcagatgagggaacctaggggaagtgatatagcaggaactactagtacccttcaagaacaaatacaatggatgacaagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaggggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgaacaagctacacaggaagtaaagggttggatgacagacaccctgttggtccaaaatgcgaacccagattgtaagaccattttaaaagcattggggccaggggctacactagaggaaatgatgacagcatgtcagggagtgggaggacctgcccataaggcaagagttttggctgaggcaatgagccaagcaacacatgcaactgtactgatgcagaaaggtaactttaagggccaaagaagaagtgttaaatgttttaactgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggtcaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccgacaaggggaggccaggaaatttccttcagaacaggacagcaccaacagccccgccaacagagccaacagccccgccagcagagagcttcgggttcggagaggcgataaccccctctccgaagcaggagcagaaagaagagggactctaccctcccttagcttccctcaaatcactctttggcaacgacccttagttacaataa","atgggtgcgagagcgtcagtattaagcggcggaaaattagatgcatgggaaagaattcggttaaggccggggggaaagaaaaaatatcaaatgaagcatctaatatgggcaagcagggagctagaacgatttgcacttaatcctggccttctagaaacatcagaaggctgtagaaaaataatagcacagctacaaccatcccttcagacaggaacagaggagcttagatcattatttaatacagtagcagtcctctattatgtacatcaaaaggaagatgtaaaagataccaaggaagctttagagaagctagagaaagaacaa------------aac---------------------aga---------------agtcag------caaaag---------------------------------acacagcaagcacaagcggca------------------------gcagctgagaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacaccagtctttatcacctagaactttaaatgcatgggtaaaggtgatagaa---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccaccccacaagatttaaacacaatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgatgaagctgcagaatgggacagattacatccagtacatgcagggcctatcccaccaggtcagatgagggaacctaggggaagtgatatagcaggaactactagtacccttcaagaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaggggccaaaagaaccctttagagactatgtagacaggttctttaaaaccctaagagctgaacaagctacacaggaagtaaagggttggatgacagacaccctgttggtc---caaaatgcgaacccagattgtaagaccattttaaaagcattggggccaggggctacactagaggaaatgatgacagcatgtcagggagtgggaggacctgcccataaggcaagagttttggctgaggcaatg------------agccaagcaaca------------------------catgcaactgtactgatgcagaaa---ggtaac---tttaagggc---caaaga---agaagtgttaaatgttttaactgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggtcaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccgacaag---------ggg---aggccaggaaatttccttcagaac------------------------------aggaca------gcaccaacagcc---ccgccaacagagccaacagcc---------------------------ccgccagca---gagagcttcgggttcgga---------------gaggcgata---accccctct------------------------ccgaagcaggagcag------------------------aaagaagag---------------------ggactctac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccttagttacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,6rev,10rev,11fw,12rev","1fw,11fw","4rev,6rev,10rev,12rev",6,2,4
"DQ358802",">Ref.46_BF.BR.01.01BR125.DQ358802","Ref","46_BF","BR","01","01BR125","DQ358802",152,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccctagtcacaataa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccggggggaaagaaaaaatatagactgaaacatttagtatgggcaagcagggagctagaacgatttgcacttaatcctggccttctagaaacatcagaaggctgtcgaaaaataataggacaactacaaccatcccttcagacaggatcagaggagcttaaatcattatttaatacagtagcagtcctctattatgtacatcaaagggtagaggtaaaggacaccaaggaagctttagagaagctagaggaagaacaaaacaaaagtaaaagtcagcaaaagacacagcaagcggcagctgaaaaaggggtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacaccagtctttatcacctagaactttaaatgcatgggtaaaagtgatagaagagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcaggacctatcccaccaggtcagatgagggagcctaggggaagtgatatagctggaactactagtaatcttcaagaacaaatacaatggatgacaagcaacccacctgtcccagtgggggaaatctataaaagatggatcatcctaggcttaaataaaatagtaagaatgtatagccctgtcagcatcttagacataagacaggggccaaaagaaccctttagagactatgtagacaggttttttaaaaccctaagagctgaacaagctacacaggaagtaaagggttggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaggaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagggttttggctgaggcaatgagccaagcaacacatgcaactgtaatgatgcagaaaagtaactttaagggccaaagaagaagtattaaatgttttaattgtggcaaagaaggacacctagccagaaattgcaaggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttcccacaaggggaggcccgggaatttccttcagaacaggccagaaccaacagccccaccagcagagagcttcgggttcggagaggagataaacccctctccgaagcaggagcagaaggaggagggacacaaccctcccttagcttccctcaaatcactctttggcaacgacccctagtcacaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccggggggaaagaaaaaatatagactgaaacatttagtatgggcaagcagggagctagaacgatttgcacttaatcctggccttctagaaacatcagaaggctgtcgaaaaataataggacaactacaaccatcccttcagacaggatcagaggagcttaaatcattatttaatacagtagcagtcctctattatgtacatcaaagggtagaggtaaaggacaccaaggaagctttagagaagctagaggaagaacaa------------aac---------------------aaaagt------aaa---agtcag------caaaag---------------------------------acacagcaagcggcagct---------------------------------gaaaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacaccagtctttatcacctagaactttaaatgcatgggtaaaagtgatagaa---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgttaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcaggacctatcccaccaggtcagatgagggagcctaggggaagtgatatagctggaactactagtaatcttcaagaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggggaaatctataaaagatggatcatcctaggcttaaataaaatagtaagaatgtatagccctgtcagcatcttagacataagacaggggccaaaagaaccctttagagactatgtagacaggttttttaaaaccctaagagctgaacaagctacacaggaagtaaagggttggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaggaaatgatgacagcatgtcagggagtgggaggacctggccataaggcaagggttttggctgaggcaatg------------agccaagcaaca------------------------catgcaactgtaatgatgcagaaa---agtaac---tttaagggc---caaaga---agaagtattaaatgttttaattgtggcaaagaaggacacctagccagaaattgcaaggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tcccacaag---------ggg---aggcccgggaatttccttcagaac------------------------------aggcca------gaaccaacagcc---------------------------------------------------ccaccagca---gagagcttcgggttcgga---------------gaggagata---aacccctct------------------------ccgaagcaggagcag------------------------aaggaggag---------------------ggacacaac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccctagtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,3fw,4rev,10rev,11fw,12rev","1fw,3fw,11fw","4rev,10rev,12rev",6,3,3
"HM026456",">Ref.46_BF.BR.07.07BR_FPS625.HM026456","Ref","46_BF","BR","07","07BR_FPS625","HM026456",153,2013,1,30,1459,1488,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccctggtcacaataa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccggggggaaagaaaaaatatagaatgaaacatctgatatgggcaagcagggagctagaacgatttgcacttgattctggccttctagaaacaccagaaggctgtcggaaaataatagcacaactacaatcatcccttcagacaggatcagaagagcttagatcattatttaatacagtagtagtcctctattttgtacatcaaaaggtagaggtaaaggacaccaaggaagctttagagaagctagaggaagaacaaaacaaaagtcagcaaaagacacagcaagcagcagctgacaaaggggtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacatcaggctttatcacctagaactttaaatgcatgggtaaaggtggtagaagagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgctaaatacagtggggggacatcaagcacccatgcaaatgctaaaaggcggcatcaatgaggaagctgcagaatggtacagatttcatacagttcatgcaggacctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaggggccaaaagagccctttagagactatgtagacaggttctttaaaaccctaagagctgaacaagctacacaggaagtaaagggttggatgacagacaccttgttggtccaaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagaattttggctgaggcaatgagccaagtaacacatacaaatgtactgatgcagaaaagtaactttaagggccaaagaagaattgttaaatgttttaattgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccaacaaggggaggcccggaaatttccttcagaacaggccagagccaacagccccgccagcagagagcttcgagatcagagaggagataaccccctctcagaagcaggagcagaaagacgagggactctaccctcccttagcttccctcaaatcactctttggcaacgacccctggtcacaataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggaaaaaattcggttaaggccggggggaaagaaaaaatatagaatgaaacatctgatatgggcaagcagggagctagaacgatttgcacttgattctggccttctagaaacaccagaaggctgtcggaaaataatagcacaactacaatcatcccttcagacaggatcagaagagcttagatcattatttaatacagtagtagtcctctattttgtacatcaaaaggtagaggtaaaggacaccaaggaagctttagagaagctagaggaagaacaa------------aac---------------------aaa---------------agtcag------caaaag---------------------------------acacagcaagcagcagct---------------------------------gacaaaggg------------------------------------------------------------------------------------------------------------------------gtcagtcaaaattaccctatagtacagaatcttcagggacaaatggtacatcaggctttatcacctagaactttaaatgcatgggtaaaggtggtagaa---gagaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggggccactccacaagatttaaacaccatgctaaatacagtggggggacatcaagcacccatgcaaatgctaaaaggcggcatcaatgaggaagctgcagaatggtacagatttcatacagttcatgcaggacctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactactagtacccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagaaatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataagacaggggccaaaagagccctttagagactatgtagacaggttctttaaaaccctaagagctgaacaagctacacaggaagtaaagggttggatgacagacaccttgttggtc---caaaatgcgaacccagattgtaagaccattttaaaagcattgggaccaggggctacactagaagaaatgatgacagcatgtcagggagtgggaggacctagccataaggcaagaattttggctgaggcaatg------------agccaagtaaca------------------------catacaaatgtactgatgcagaaa---agtaac---tttaagggc---caaaga---agaattgttaaatgttttaattgtggcaaagaaggacacatagccagaaattgcagggcccctagaaaaaagggctgttggaaatgtggaagagaaggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggcccggaaatttccttcagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccgccagca---gagagcttcgagatcaga---------------gaggagata---accccctct------------------------cagaagcaggagcag------------------------aaagacgag---------------------ggactctac------cctccc---tta---gcttccctcaaatcactctttggcaacgacccctggtcacaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,10rev,12rev",6,2,4
"GQ372987",">Ref.47_BF.ES.08.P1942.GQ372987","Ref","47_BF","ES","08","P1942","GQ372987",154,2013,1,30,1468,1497,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1468,1497,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggagaattggatagatgggaaaaaattcggttaaggccaggaggaaagaaaacatataaattgaaacatatagtatgggcaagcagggagctagaacgattcgctcttaatcctggcctgttagaaacatcagaaggctgtagacaaatactgggacagctacaaccagcccttcagacaggatcagaagaacttagatcactatttaatgcagtagcaaccctctattgtgtgcatcaaaagatcgatgtaaaagacaccaaggaagctttagataaaatagaggaagagcaaaacaaaagtaagaaaaaggtacagcaagcagctgacacaggaaataacaaccaggtcagccaaaattaccctatagtgcagaacgcccaggggcacatgatacatcagcctatttcacctagaactttaaatgcatgggtaaaggtggtagaagaaaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggatgcaccccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgctaaaagacaccattaatgaggaagctgcagaatgggacagattacatccagtgcatgcaggacctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactaccagtacccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagatatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagattatgtggataggttctttaaagtcctaagagccgagcaagctacacaggatgtaaaaaattggatgacagaaaccttgttggtccaaaattcgaacccagattgtaagaccattttaaaagcattgggaccacaggctacactagaagaaatgatgacagcatgccaaggagtgggagggcccggccataaagcaagagttttggcagaagcaatgagccaagcaacagcttcaaatgtcataatgatgcagaaaggcaattataggggccagagaaagattgtcaagtgtttcaattgtggcagagaaggacacatagccaaaaattgcagggcccctaggaaaaagggctgttggaagtgtggaaaagaaggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccagcaaggggaggccagggaattttctccagaacaggccagagccaacagccccgccagcagagagcttggggtttggagaggagacaaccccctctccgaagcaggaacagaaagagggactgtatcctcccttagcttccctcagatcactctttggcaacgacccctagtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggagaattggatagatgggaaaaaattcggttaaggccaggaggaaagaaaacatataaattgaaacatatagtatgggcaagcagggagctagaacgattcgctcttaatcctggcctgttagaaacatcagaaggctgtagacaaatactgggacagctacaaccagcccttcagacaggatcagaagaacttagatcactatttaatgcagtagcaaccctctattgtgtgcatcaaaagatcgatgtaaaagacaccaaggaagctttagataaaatagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaaag---------------------------------gtacagcaagca---gct---------------------------------gacacagga------------------------------------------------------------------------------------------aataacaaccag------------------gtcagccaaaattaccctatagtgcagaacgcccaggggcacatgatacatcagcctatttcacctagaactttaaatgcatgggtaaaggtggtagaa---gaaaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggatgcaccccacaagatttaaacaccatgttaaatacagtggggggacatcaagcagccatgcaaatgctaaaagacaccattaatgaggaagctgcagaatgggacagattacatccagtgcatgcaggacctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactaccagtacccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagatatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagattatgtggataggttctttaaagtcctaagagccgagcaagctacacaggatgtaaaaaattggatgacagaaaccttgttggtc---caaaattcgaacccagattgtaagaccattttaaaagcattgggaccacaggctacactagaagaaatgatgacagcatgccaaggagtgggagggcccggccataaagcaagagttttggcagaagcaatg------------agccaagcaacagct---------------------tcaaatgtcataatgatgcagaaa---ggcaat---tataggggc---cagaga---aagattgtcaagtgtttcaattgtggcagagaaggacacatagccaaaaattgcagggcccctaggaaaaagggctgttggaagtgtggaaaagaaggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccagcaag---------ggg---aggccagggaattttctccagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccgccagca---gagagcttggggtttgga---------------gaggagaca---accccctct------------------------ccgaagcaggaacag------------------------aaagag------------------------ggactgtat------cctccc---tta---gcttccctcagatcactctttggcaacgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,7rev,10rev,12rev",7,2,5
"FJ670529",">Ref.47_BF.ES.08.X2457_2.FJ670529","Ref","47_BF","ES","08","X2457_2","FJ670529",155,2013,1,30,1492,1521,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcaacgacccctagtcacagtaa",1,30,1,30,1,30,1984,2013,1492,1521,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggagaattggatagatgggaaaaaattcggttaaggccaggaggaaagaaacaatataaattgaaacatatagtatgggcaagcagggagctagagcgattcgccgttaatcctggcctgttagaaacatcagaaggctgtagaaaaatactgggacagctacaaccatcccttcagacaggatcagaagaacttaaatcattatataatacagtagcaaccctctattgtgtgcatcaaaagatcgatgtaaaagacaccaaggaagctttagataaaatagaggaagagcaaaacaaaagtaagaaaaaggcacagcaagcagcagcagcagctgacacaggaagtaacaaccaggtcagccaaaattaccctatagtgcagaacgcccaggggcaaatgatgcatcagcctatttcacctagaactttaaatgcatgggtaaaggtggtagaagaaaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggatgcaccccacaagatttaaataccatgttaaatacagtggggggacatcaagcagccatgcaaatgctaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcgggacctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactaccagtacccttcaggaacaaatacaatggatgacaagcaacccacctgtcccagtgggagatatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagattatgtggataggttctttaaggtcctaagagctgagcaagctacacaggatgtaaaaaattggatgacagaaaccttgttggtccaaaattcgaacccagattgtaagaccattttaaaagcattgggaccacaggctacactagaagaaatgatgacagcatgccaaggagtgggagggcccggccataaagcaagaattttggcagaagcaatgagccaagtaacaacttcaaatgttataatgatgcagaaaggcaattataggggtcaaagaaagagtgtcaagtgtttcaattgcggcagagaaggacacatagccaaaaattgcagggcccctagaaaaagaggctgttggaagtgtggaaaagaaggacaccaaatgaaagactgcactgaaagacaggctaattttttagggaaaatttggccttccaacaaggggaggccagggaactttctccagaacaggccagagccaacagccccgccagcagagagcttggggtttggagaggagataaccccctctccgaagcaggagcagaaagtcgagggacagggacagggactgtatcctcccttagcttccctcaaatcactctttggcaacgacccctagtcacagtaa","atgggtgcgagagcgtcagtattaagcgggggagaattggatagatgggaaaaaattcggttaaggccaggaggaaagaaacaatataaattgaaacatatagtatgggcaagcagggagctagagcgattcgccgttaatcctggcctgttagaaacatcagaaggctgtagaaaaatactgggacagctacaaccatcccttcagacaggatcagaagaacttaaatcattatataatacagtagcaaccctctattgtgtgcatcaaaagatcgatgtaaaagacaccaaggaagctttagataaaatagaggaagagcaa------------aac---------------------aaa---------------agtaag------aaaaag---------------------------------gcacagcaagcagcagca---------------------------gcagctgacacagga------------------------------------------------------------------------------------------agtaacaaccag------------------gtcagccaaaattaccctatagtgcagaacgcccaggggcaaatgatgcatcagcctatttcacctagaactttaaatgcatgggtaaaggtggtagaa---gaaaaggcttttagcccagaagtaatacccatgttttcagcattatcagaaggatgcaccccacaagatttaaataccatgttaaatacagtggggggacatcaagcagccatgcaaatgctaaaagacaccatcaatgaggaagctgcagaatgggacagattacatccagtgcatgcgggacctatcccaccaggccagatgagggaacctaggggaagtgatatagctggaactaccagtacccttcaggaacaaatacaatggatgaca---------agcaacccacctgtc---ccagtgggagatatctataaaagatggatcatcctaggattaaataaaatagtaagaatgtatagccctgtcagcattttggacataaaacaagggccaaaagaaccctttagagattatgtggataggttctttaaggtcctaagagctgagcaagctacacaggatgtaaaaaattggatgacagaaaccttgttggtc---caaaattcgaacccagattgtaagaccattttaaaagcattgggaccacaggctacactagaagaaatgatgacagcatgccaaggagtgggagggcccggccataaagcaagaattttggcagaagcaatg------------agccaagtaacaact---------------------tcaaatgttataatgatgcagaaa---ggcaat---tataggggt---caaaga---aagagtgtcaagtgtttcaattgcggcagagaaggacacatagccaaaaattgcagggcccctagaaaaagaggctgttggaagtgtggaaaagaaggacaccaaatgaaagactgcact---------gaa---agacaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccagggaactttctccagaac------------------------------aggcca------gagccaacagcc---------------------------------------------------ccgccagca---gagagcttggggtttgga---------------gaggagata---accccctct------------------------ccgaagcaggagcaga-----------------aagtcgagggacagg------------gac---ag-ggactgtat------cctccc---tta---gcttccctcaaatcactctttggcaacgacccctagtcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,7rev,8rev,9fw,10rev,11fw,12rev","1fw,9fw,11fw","2rev,4rev,7rev,8rev,10rev,12rev",9,3,6
"HQ385477",">Ref.49_cpx.GM.02.N18380.HQ385477","Ref","49_cpx","GM","02","N18380","HQ385477",156,2013,1,30,1454,1483,"atgggtgcgagagcgtcagtgttaagcggg","ctctttggcagcgacccctagttaccataa",1,30,1,30,1,30,1984,2013,1454,1483,1984,2013,"atgggtgcgagagcgtcagtgttaagcgggggaaaattagatgaatgggagaaaattcagttaaggccaggaggaaagaaaaaatatagaatgaaacatctagtatgggcaagcagagaactggaaagatttgcaattaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacaatcaaccattaagacaggatcagaagagcttagatcattatataatacagtatcaaccctctattgtgtacataaaaggatacaggtaaaagacacaaaggaagctttagataaaatagaggaaatacaaaataagagcaagcaagggatgcagcagacagcagctgccacaggaatcagtcaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcaggcagtgtcaccaagaactttaaatgcatgggtgaaagtaatagaagaaaaggcttttagcccagaagtaatacccatgttctcagcattatcagaaggggcaaccccacaagatttaaatatgatgttgaacataattggaggacaccaggcagctatgcaaatgctaaaagataccatcaatgaggaagctgcagaatgggacaggttacatccagtccatgcagggcctattccaccaggccaaatgagagaaccgaggggaagtgacatagcaggaactactagtacccctcaagaacaaataggatggataacagccaatccacctatcccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttggcattttggacataaaacaagggccaaaagaacccttcagggactatgtagatagattctttaaaactctcagagctgagcaagcttcacaggaagtaaaaaattggatgacagaaaccttgctggtccaaaatgcgaatccagactgtaagaacattttaagagcattaggagtaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacctagtcataaagcaagggttttggctgaagcaatgagtcaaacacaaaatggcagcataatgatgcagagaggcaattttaagggccagaaaagaattaaatgtttcaactgtggcaaagaaggacacctagccagaaactgcagggcccctaggaaaaagggctgttggaaatgtgggaaagaaggacaccaaatgaaggactgcagcagagagacaagctaattttttagggaaaatttggccttccagcaaggggaggccagggaactttcttcagaacagaccagagccaacagccccaccagtggagagcttcgggttcggagaggaggtagccccctccccgaaacaagagccgaaggacaaggaactgtatcctgtagcttccctcaaatcactctttggcagcgacccctagttaccataa","atgggtgcgagagcgtcagtgttaagcgggggaaaattagatgaatgggagaaaattcagttaaggccaggaggaaagaaaaaatatagaatgaaacatctagtatgggcaagcagagaactggaaagatttgcaattaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacaatcaaccattaagacaggatcagaagagcttagatcattatataatacagtatcaaccctctattgtgtacataaaaggatacaggtaaaagacacaaaggaagctttagataaaatagaggaaatacaa------------aat---------------------aag---------------agcaag------caaggg---------------------------------atgcagcagacagcagct---------------------------------gccacagga------------------------------------------------------------------------------------------------------------------------atcagtcaaaattaccctatagtgcaaaatgcacaagggcaaatggtacatcaggcagtgtcaccaagaactttaaatgcatgggtgaaagtaatagaa---gaaaaggcttttagcccagaagtaatacccatgttctcagcattatcagaaggggcaaccccacaagatttaaatatgatgttgaacataattggaggacaccaggcagctatgcaaatgctaaaagataccatcaatgaggaagctgcagaatgggacaggttacatccagtccatgcagggcctattccaccaggccaaatgagagaaccgaggggaagtgacatagcaggaactactagtacccctcaagaacaaataggatggataaca---------gccaatccacctatc---ccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttggcattttggacataaaacaagggccaaaagaacccttcagggactatgtagatagattctttaaaactctcagagctgagcaagcttcacaggaagtaaaaaattggatgacagaaaccttgctggtc---caaaatgcgaatccagactgtaagaacattttaagagcattaggagtaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacctagtcataaagcaagggttttggctgaagcaatg------------agtcaaacacaa------------------------aatggcagcataatgatgcagaga---ggcaat---tttaagggc---cagaaa---aga---attaaatgtttcaactgtggcaaagaaggacacctagccagaaactgcagggcccctaggaaaaagggctgttggaaatgtgggaaagaaggacaccaaatgaaggactgcagc-----a---gag---agacaagctaattttttagggaaaatttgg---cct---tccagcaag---------ggg---aggccagggaactttcttcagaac------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagtg---gagagcttcgggttcgga---------------gaggaggta---gccccctcc------------------------ccgaaacaagagccg------------------------aaggacaag---------------------gaactgtat---------cct---gta---gcttccctcaaatcactctttggcagcgacccctagttaccataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,7rev,10rev,11fw,12rev","1fw,11fw","7rev,10rev,12rev",5,2,3
"HQ385479",">Ref.49_cpx.GM.03.N26677.HQ385479","Ref","49_cpx","GM","03","N26677","HQ385479",157,2013,1,30,1462,1491,"atgggtgcgagagcgtcaatattaagcggg","ctctttggcagcgacccctagttaccataa",1,30,1,30,1,30,1984,2013,1462,1491,1984,2013,"atgggtgcgagagcgtcaatattaagcgggggaaaattagataaatgggagaaaattcggttaaggccagggggaaagaaacaatatagactgaaacatctagtatgggcaagcagggagctggaaagattcgcagttaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacaaccagctctcaaaacaggatcagaagaacttagatcattatataatacagtagcaaccctctattgtgtacatcaaaggatagaggtgaaagacaccaaggaggcgttagataaaatagaggaaatacaaaagaagagcaagcaagggacgcagcaggcagcagctgccacaggaaacatcagcagtattagtcaaaactaccccatagtgcaaaatacacaagggcaaatggtacatcagcccatgtcaccaagaactttaaatgcatgggtgaaagtaatagaagaaaaggcttttagcccagaagtaatacccatgttttcagcattgtcagaaggagcaaccccacaagatttaaatatgatgttgaacattgtgggaggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggatagggtacatccagtccatgcagggcctattccaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggataacaggcaatccacctatcccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattctggacataagacaagggccaaaagaacccttcagggactatgtagataggttctttaaaactctcagagctgagcaagctacacaggaggtaaaaaattggatgacagaaaccttgctggtccaaaatgcgaatccagactgtaagaccattttaagaggattaggaccaggggcttcattagaagaaatgatgacagcatgccagggagtgggaggacctggccataaagcaagggttttagctgaagcaatgagtcaagtacaaaattccaacataatgatgcagaaaggcaattttaagggccagagaaaaattaagtgtttcaactgtggcaaagaaggacacctagccaaaaattgcagggcccctaggaaaaagggctgttggagatgtgggaaagaaggacaccaaatgaaggactgcacagcgggacaggctaattttttagggagaatttggccttcccacaaggggaggccagggaattttctccagaacagaccagagccaacagccccaccagcggagagcttcgggttcggagaagagatagccccctccccgaagcaggagcagaaggaggaactgtatccttcagcttccctcaaatcactctttggcagcgacccctagttaccataa","atgggtgcgagagcgtcaatattaagcgggggaaaattagataaatgggagaaaattcggttaaggccagggggaaagaaacaatatagactgaaacatctagtatgggcaagcagggagctggaaagattcgcagttaaccctggccttttagaaacagcagaaggatgtcaacaaataatagaacagttacaaccagctctcaaaacaggatcagaagaacttagatcattatataatacagtagcaaccctctattgtgtacatcaaaggatagaggtgaaagacaccaaggaggcgttagataaaatagaggaaatacaa------------aag---------------------aag---------------agcaag------caaggg---------------------------------acgcagcaggcagcagct---------------------------------gccacagga------------------------------------------------------------------------------------------aacatcagcagt------------------attagtcaaaactaccccatagtgcaaaatacacaagggcaaatggtacatcagcccatgtcaccaagaactttaaatgcatgggtgaaagtaatagaa---gaaaaggcttttagcccagaagtaatacccatgttttcagcattgtcagaaggagcaaccccacaagatttaaatatgatgttgaacattgtgggaggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggatagggtacatccagtccatgcagggcctattccaccaggccaaatgagagaaccaaggggaagtgacatagcaggaactactagtacccttcaagaacaaataggatggataaca---------ggcaatccacctatc---ccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttagcattctggacataagacaagggccaaaagaacccttcagggactatgtagataggttctttaaaactctcagagctgagcaagctacacaggaggtaaaaaattggatgacagaaaccttgctggtc---caaaatgcgaatccagactgtaagaccattttaagaggattaggaccaggggcttcattagaagaaatgatgacagcatgccagggagtgggaggacctggccataaagcaagggttttagctgaagcaatg------------agtcaagtacaa------------------------aattccaacataatgatgcagaaa---ggcaat---tttaagggc---cagaga---aaa---attaagtgtttcaactgtggcaaagaaggacacctagccaaaaattgcagggcccctaggaaaaagggctgttggagatgtgggaaagaaggacaccaaatgaaggactgcaca---------gcg---ggacaggctaattttttagggagaatttgg---cct---tcccacaag---------ggg---aggccagggaattttctccagaac------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagcg---gagagcttcgggttcgga---------------gaagagata---gccccctcc------------------------ccgaagcaggagcag------------------------aaggag------------------------gaactgtat---------cct---tca---gcttccctcaaatcactctttggcagcgacccctagttaccataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,10rev,12rev","1fw","10rev,12rev",3,1,2
"HQ385478",">Ref.49_cpx.GM.97.N28353.HQ385478","Ref","49_cpx","GM","97","N28353","HQ385478",158,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtattaagcggg","ctctttggcagcgacccatagttaccataa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagaaaattcggttaaggccagggggaagaaaacaatatagaatgaaacatttagtatgggcaagcagagagctggaaagattcgcaattaatcctggccttttagaaacagcaaaaggatgtcaacaaataatagagcagttacaaccagctctcaagacaggatcagaagaacttagatcattatataatacagtggcaaccctctattgtgtacatgaaaagatagaggtaaaagacaccaaggaagctttagataaaatagaggaaaaacaaaataagagcaagcaagggacgcagcagacagcagctgccacaggaaacaacagcagtatcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaggccatatcaccaagaactttaaatgcatgggtaaaagtaatagaagaaaaggcttttagcccagaagtaatacccatgttctcagcattatcagatggagcaaccccacaagatttaaatatgatgttgaacatagttggaggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggataggttacatccagtccatgcagggcctattccaccaggccaaatgagagaaccaaggggaagtgatatagcaggaactaccagtaaccttcaggaacaaataggatggataacaggcaatccacctatcccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttggcattttggacataaaacaagggccaaaagaacccttcagggactatgtagataggttctttaaaactctcagagctgagcaagctacacaggaggtaaaaaattggatgacagaaaccttgctggtccaaaatgcgaatccagactgtaagaccattttaagagcattaggagtaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacctggccataaagcaagggttttggctgaagcaatgagtcaaatacaaagcccccacataatgatgcagagaggcaattttaagggccaaaaaagaattaaatgtttcaactgtggcaaagaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaagaaggacaccaaatgaaggactgcacagagaggcaggctaattttttagggaaaatttggccttccaacaaggggaggccaggaaattttctccagaacagaccagagccaacagccccaccagcggagagcttcaggttcggagaggaggcagccccctccccgaaacaggagccgaaggacaaggaactgtaccctttagcttccctcaaatcactctttggcagcgacccatagttaccataa","atgggtgcgagagcgtcagtattaagcgggggaaaattagatgcatgggagaaaattcggttaaggccagggggaagaaaacaatatagaatgaaacatttagtatgggcaagcagagagctggaaagattcgcaattaatcctggccttttagaaacagcaaaaggatgtcaacaaataatagagcagttacaaccagctctcaagacaggatcagaagaacttagatcattatataatacagtggcaaccctctattgtgtacatgaaaagatagaggtaaaagacaccaaggaagctttagataaaatagaggaaaaacaa------------aat---------------------aag---------------agcaag------caaggg---------------------------------acgcagcagacagcagct---------------------------------gccacagga------------------------------------------------------------------------------------------aacaacagcagt------------------atcagtcaaaattaccccatagtgcaaaatgcacaagggcaaatggtacatcaggccatatcaccaagaactttaaatgcatgggtaaaagtaatagaa---gaaaaggcttttagcccagaagtaatacccatgttctcagcattatcagatggagcaaccccacaagatttaaatatgatgttgaacatagttggaggacaccaggcagctatgcaaatgttaaaagataccatcaatgaggaagctgcagaatgggataggttacatccagtccatgcagggcctattccaccaggccaaatgagagaaccaaggggaagtgatatagcaggaactaccagtaaccttcaggaacaaataggatggataaca---------ggcaatccacctatc---ccagtgggagaaatctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctgttggcattttggacataaaacaagggccaaaagaacccttcagggactatgtagataggttctttaaaactctcagagctgagcaagctacacaggaggtaaaaaattggatgacagaaaccttgctggtc---caaaatgcgaatccagactgtaagaccattttaagagcattaggagtaggggctacattagaagaaatgatgacagcatgccagggagtgggaggacctggccataaagcaagggttttggctgaagcaatg------------agtcaaatacaa------------------------agcccccacataatgatgcagaga---ggcaat---tttaagggc---caaaaa---aga---attaaatgtttcaactgtggcaaagaaggacatctagccagaaattgcagggcccctaggaaaaagggctgttggaaatgtgggaaagaaggacaccaaatgaaggactgcaca---------gag---aggcaggctaattttttagggaaaatttgg---cct---tccaacaag---------ggg---aggccaggaaattttctccagaac------------------------------agacca------gagccaacagcc---------------------------------------------------ccaccagcg---gagagcttcaggttcgga---------------gaggaggca---gccccctcc------------------------ccgaaacaggagccg------------------------aaggacaag---------------------gaactgtac---------cct---tta---gcttccctcaaatcactctttggcagcgacccatagttaccataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,6rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,6rev,10rev,12rev",7,2,5
"L20587",">Ref.O.BE.87.ANT70.L20587","Ref","O","BE","87","ANT70","L20587",159,2013,1,30,1477,1506,"atgggtgcgagtgcgtctgtgttgacagga","ctctttgggacagaccaatagttacagcaa",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagtgcgtctgtgttgacaggaagcaaattggatgcatgggaacaaattaggttaaagccaggatctaaaaagaaatatagactaaaacacttagtatgggcaagcagagagctggaaagattcgcatgtaatcctgagctactagaaactgcagagggtaatgagaagctgctacagcagttagagccagctctcaagacagggtcagacagcctgcagtcactctggaacgcaatagtagtgctctggtgtgttcacaacagatataaaattggagatacgcagcaggcaatacaaaagttaaaggaagtaatggggagcaggaagtctgcggacgccgctaaggaagacacaagcgcaaggcaggcgggtcaaaattaccctatagtatcaaatgcgcagggacaaatggtacatcaggccatctcccccaggactttaaatgcatgggtaaaggcagtagaagaaaaagcctttaaccctgaaatcattcctatgttcatggcattgtcagagggagcaatttcctatgatattaatactatgctaaatgccataggaggacatcaaggagctttacaagtgctaaaggaagtaatcaatgaggaagcagtagagtgggatagaactcacccaccaccggtagggccgttgccaccagggcagataagggaaccaacaggaagtgacattgctgggacaactagcacccagcaagagcaaattcactggactaccaggcccaaccaacctatcccagtaggagacatctatagaaaatggatagtgttaggactaaacaaaatggtaaaaatgtacagcccagtgagcatcttagatattaagcagggaccaaaggaaccatttagagactatgtagatcggttctacaaaacattaagagctgagcaagctactcaagaagtaaaaaattggatgacagaaactctgcttgttcaaaatgccaatccagattgcaaacagattttgaaatcattagggccaggagctaccttagaagagatgatggtagcctgtcagggagtaggaggaccaactcataaggccagagtgctagcagaagcaatggctacagcccagcaagatttgaaaggaggatacacagcagtattcatgcaaagagggcaaaatccaattaggaaaggaactataaaatgtttcaactgtggaaaagagggacatatagcaagaaattgtcgagcacctaggaaaaagggttgctggaaatgtggacaggaaggtcaccaaatgaaagattgcagaaatggaaaacaggcaaattttttaggcaaatactggcctccggggggcacgaggccaggcaattatgtgcagagaccagcacacccatcagccccaccgatggaggaggaagtgaagggacaggagaatcaggaacagaaagggggcccgaacgagctctatccgtttgcctccctcaaatccctctttgggacagaccaatagttacagcaa","atgggtgcgagtgcgtctgtgttgacaggaagcaaattggatgcatgggaacaaattaggttaaagccaggatctaaaaagaaatatagactaaaacacttagtatgggcaagcagagagctggaaagattcgcatgtaatcctgagctactagaaactgcagagggtaatgagaagctgctacagcagttagagccagctctcaagacagggtcagacagcctgcagtcactctggaacgcaatagtagtgctctggtgtgttcacaacagatataaaattggagatacgcagcaggcaatacaaaagttaaaggaagtaatg------------ggg---------------------agc---------------aggaag------tctgcggac---gcc------------------------gctaaggaagacaca------------------------------------agcgcaagg---------------------------------------------------------------------------------------------------cag------------------gcgggtcaaaattaccctatagtatcaaatgcgcagggacaaatggtacatcaggccatctcccccaggactttaaatgcatgggtaaaggcagtagaa---gaaaaagcctttaaccctgaaatcattcctatgttcatggcattgtcagagggagcaatttcctatgatattaatactatgctaaatgccataggaggacatcaaggagctttacaagtgctaaaggaagtaatcaatgaggaagcagtagagtgggatagaactcacccaccaccggtagggccgttgccaccagggcagataagggaaccaacaggaagtgacattgctgggacaactagcacccagcaagagcaaattcactggactacc------aggcccaaccaacctatc---ccagtaggagacatctatagaaaatggatagtgttaggactaaacaaaatggtaaaaatgtacagcccagtgagcatcttagatattaagcagggaccaaaggaaccatttagagactatgtagatcggttctacaaaacattaagagctgagcaagctactcaagaagtaaaaaattggatgacagaaactctgcttgtt---caaaatgccaatccagattgcaaacagattttgaaatcattagggccaggagctaccttagaagagatgatggtagcctgtcagggagtaggaggaccaactcataaggccagagtgctagcagaagcaatg------------gctacagcccagcaagatttgaaaggagga------tacacagcagtattcatgcaaaga---gggcaa---aatccaatt---aggaaa---ggaactataaaatgtttcaactgtggaaaagagggacatatagcaagaaattgtcgagcacctaggaaaaagggttgctggaaatgtggacaggaaggtcaccaaatgaaagattgcagaaat------gga---aaacaggcaaattttttaggcaaatactgg---cct---ccggggggc---------acg---aggccaggcaattatgtgcagaga------------------------------ccagca------cacccatcagcc---------------------------------------------------ccaccgatg------------------gag---------------gaggaagtg------------aag---------------ggacaggagaatcaggaacag------------------------aaagggggcccgaac---------------gagctctat---------ccg---ttt---gcctccctcaaatccctctttgggacagaccaatagttacagcaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,10rev,12rev",6,2,4
"L20571",">Ref.O.CM.91.MVP5180.L20571","Ref","O","CM","91","MVP5180","L20571",160,2013,1,30,1477,1506,"atgggtgcgagagcgtctgtgttgacaggg","ctctttgggacagaccaatagtcacagcaa",1,30,1,30,1,30,1984,2013,1477,1506,1984,2013,"atgggtgcgagagcgtctgtgttgacagggagtaaattggatgcatgggaacgaattaggttaaggccaggatctaaaaaggcatataggctaaaacatttagtatgggcaagcagggagctggaaagatacgcatgtaatcctggtctattagaaactgcagaaggtactgagcaactgctacagcagttagagccagctctcaagacagggtcagaggacctgaaatctctctggaacgcaatagcagtactctggtgcgttcacaacagatttgacatccgagatacacagcaggcaatacaaaagttaaaggaagtaatggcaagcaggaagtctgcagaggccgctaaggaagaaacaagccctaggcagacaagtcaaaattaccctatagtaacaaatgcacagggacaaatggtacatcaagccatctcccccaggactttaaatgcatgggtaaaggcagtagaagagaaggcctttaaccctgaaattattcctatgtttatggcattatcagaaggggctgtcccctatgatatcaataccatgctgaatgccatagggggacaccaaggggctttacaagtgttgaaggaagtaatcaatgaggaagcagcagaatgggatagaactcatccaccagcaatggggccgttaccaccagggcagataagggaaccaacaggaagtgacattgctggaacaactagcacacagcaagagcaaattatatggactactagaggggctaactctatcccagtaggagacatctatagaaaatggatagtgctaggactaaacaaaatggtaaaaatgtacagtccagtgagcatcttagatattaggcagggaccaaaagaaccattcagagattatgtagatcggttttacaaaacattaagagctgagcaagctactcaagaagtaaagaattggatgacagaaaccttgcttgttcagaattcaaacccagattgtaaacaaattctgaaagcattaggaccagaagctactttagaagaaatgatggtagcctgtcaaggagtaggagggccaactcacaaggcaaaaatactagcagaagcaatggcttctgcccagcaagatttaaaaggaggatacacagcagtattcatgcaaagagggcagaatccaaatagaaaagggcccataaaatgcttcaattgtggaaaagagggacatatagcaaaaaactgtcgagcacctagaaaaaggggttgctggaaatgtggacaggaaggtcaccaaatgaaagattgcaaaaatggaagacaggcaaattttttagggaagtactggcctccggggggcacgaggccaggcaattatgtgcagaaacaagtgtccccatcagccccaccaatggaggaggcagtgaaggaacaagagaatcagagtcagaagggggatcaggaagagctgtacccatttgcctccctcaaatccctctttgggacagaccaatagtcacagcaa","atgggtgcgagagcgtctgtgttgacagggagtaaattggatgcatgggaacgaattaggttaaggccaggatctaaaaaggcatataggctaaaacatttagtatgggcaagcagggagctggaaagatacgcatgtaatcctggtctattagaaactgcagaaggtactgagcaactgctacagcagttagagccagctctcaagacagggtcagaggacctgaaatctctctggaacgcaatagcagtactctggtgcgttcacaacagatttgacatccgagatacacagcaggcaatacaaaagttaaaggaagtaatg------------gca---------------------agc---------------aggaagtctgcagaggcc---------------------------------gctaaggaagaaaca------------------------------------agccctagg---------------------------------------------------------------------------------------------------cag------------------acaagtcaaaattaccctatagtaacaaatgcacagggacaaatggtacatcaagccatctcccccaggactttaaatgcatgggtaaaggcagtagaa---gagaaggcctttaaccctgaaattattcctatgtttatggcattatcagaaggggctgtcccctatgatatcaataccatgctgaatgccatagggggacaccaaggggctttacaagtgttgaaggaagtaatcaatgaggaagcagcagaatgggatagaactcatccaccagcaatggggccgttaccaccagggcagataagggaaccaacaggaagtgacattgctggaacaactagcacacagcaagagcaaattatatggactactaga---ggggctaac---tctatc---ccagtaggagacatctatagaaaatggatagtgctaggactaaacaaaatggtaaaaatgtacagtccagtgagcatcttagatattaggcagggaccaaaagaaccattcagagattatgtagatcggttttacaaaacattaagagctgagcaagctactcaagaagtaaagaattggatgacagaaaccttgcttgtt---cagaattcaaacccagattgtaaacaaattctgaaagcattaggaccagaagctactttagaagaaatgatggtagcctgtcaaggagtaggagggccaactcacaaggcaaaaatactagcagaagcaatggcttctgccc--agcaagatttaaaaggagga----------------tacacagcagtattcatgcaaaga---gggcag---aatccaaat---agaaaa---gggcccataaaatgcttcaattgtggaaaagagggacatatagcaaaaaactgtcgagcacctagaaaaaggggttgctggaaatgtggacaggaaggtcaccaaatgaaagattgcaaaaat------gga---agacaggcaaattttttagggaagtactgg---cct---ccggggggc---------acg---aggccaggcaattatgtgcagaaa------------------------------caagtg------tccccatcagcc---------------------------------------------------ccaccaatg------------------gag---------------gag---gca------------gtgaaggaacaagagaatcagagtcagaagggggatcag------------------------gaagag---------------------------ctgtac---------cca---ttt---gcctccctcaaatccctctttgggacagaccaatagtcacagcaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"AY169812",">Ref.O.CM.98.98CMU2901.AY169812","Ref","O","CM","98","98CMU2901","AY169812",161,2013,1,30,1483,1512,"atgggtgcgagtgcgtccgtgttgacaggg","ctctttgggacagaccagtagttacagcaa",1,30,1,30,1,30,1984,2013,1483,1512,1984,2013,"atgggtgcgagtgcgtccgtgttgacagggagtaaattggatgcatgggaacgaattcggttgaagccaggatctaaaaagaaatatagactaaaacatttagtatgggcaagcagggagctggacagattcgcatgtaatcctgagctactagaaactgcagagggcaatgagaagttgttacaacagttagaaccagctctcaagacagggtcagaaagcctgcagtcactctggaacacaatagcagtgctctggtgtgttcacaacagatataaagttgaagatacgcagcaggcaatacaaaagttaaaggaagtaatggggagtaggaagtctgcaagtgccgctaaggaagaaacaagtgcaaggcagacgggtcaaaattaccctgtagtaccaaatgcgcagggacaaatgatacatcaggccctctcccccaggactttaaatgcatgggtaaaggcagtagaagaaaaggcctttaaccctgaaatcattcctatgttcatggcattgtcagagggagctattccctatgatattaataccatgctaaatgccataggaggacatcaaggggccttacaagtgctaaaggaagtaatcaatgatgaagcagcagattgggatagaagtcacccaccagtggtagggccgttgccaccagggcaaataagggaaccaacaggaagtgacattgctgggacaactagctcccagcaagagcaagttcactggattactagggccaaccaccctatcccagtaggagacatctatagaaaatggatagtgttgggactaaacaaaatggtaaaaatgtacagtccagtgagcatcttagatattaaacagggaccaaaagaaccatttagagattatgtagatcggttctacaaaacattaagagctgagcaagcatctcaagatgtaaagaattggatgacagaaaccctgcttgttcagaatgccaacccagattgcaaacagattttgaaagcattagggccaggagctaccttagaagaaatgatggtagcctgtcagggagtaggaggaccaactcataaggccaaattgctagctgaagcgatggttaccgcccatcaagatctaaaaggaggatacacatcagtattcatgcaaagaggacaaaatccaatgaggaagggacctataaaatgtttcaattgtggaaaagagggacatatagcaaaaaattgtcgagcacctagaaagaaaggttgctggaaatgtggacaggaaggtcaccagatgagagattgcagaaatggaaaacaggcaaattttttagggaaatactggcctccagggggcacgaggccaggcaattatgcacagagacaagtrgccccatcagctccaccaatggaggacgaaatgaagggacaagagaaagagaatcaggaacagaagggggacccaaacgaactctatccgtttgcctccctcaaatccctctttgggacagaccagtagttacagcaa","atgggtgcgagtgcgtccgtgttgacagggagtaaattggatgcatgggaacgaattcggttgaagccaggatctaaaaagaaatatagactaaaacatttagtatgggcaagcagggagctggacagattcgcatgtaatcctgagctactagaaactgcagagggcaatgagaagttgttacaacagttagaaccagctctcaagacagggtcagaaagcctgcagtcactctggaacacaatagcagtgctctggtgtgttcacaacagatataaagttgaagatacgcagcaggcaatacaaaagttaaaggaagtaatg------------ggg---------------------agt---------------aggaagtctgcaagtgcc---------------------------------gctaaggaagaaaca------------------------------------agtgcaagg---------------------------------------------------------------------------------------------------cag------------------acgggtcaaaattaccctgtagtaccaaatgcgcagggacaaatgatacatcaggccctctcccccaggactttaaatgcatgggtaaaggcagtagaa---gaaaaggcctttaaccctgaaatcattcctatgttcatggcattgtcagagggagctattccctatgatattaataccatgctaaatgccataggaggacatcaaggggccttacaagtgctaaaggaagtaatcaatgatgaagcagcagattgggatagaagtcacccaccagtggtagggccgttgccaccagggcaaataagggaaccaacaggaagtgacattgctgggacaactagctcccagcaagagcaagttcactggattact------agggccaaccaccctatc---ccagtaggagacatctatagaaaatggatagtgttgggactaaacaaaatggtaaaaatgtacagtccagtgagcatcttagatattaaacagggaccaaaagaaccatttagagattatgtagatcggttctacaaaacattaagagctgagcaagcatctcaagatgtaaagaattggatgacagaaaccctgcttgtt---cagaatgccaacccagattgcaaacagattttgaaagcattagggccaggagctaccttagaagaaatgatggtagcctgtcagggagtaggaggaccaactcataaggccaaattgctagctgaagcgatggttaccgcccat---caagatctaaaagga------------gga---tacacatcagtattcatgcaaaga---ggacaa---aatccaatg---aggaag---ggacctataaaatgtttcaattgtggaaaagagggacatatagcaaaaaattgtcgagcacctagaaagaaaggttgctggaaatgtggacaggaaggtcaccagatgagagattgcagaaat------gga---aaacaggcaaattttttagggaaatactgg---cct---ccagggggc---------acg---aggccaggcaattatgcacagaga------------------------------caagtr------gccccatcagct---------------------------------------------------ccaccaatg------------------gag---------------gacgaaatg------------aaggga---------caagagaaagagaatcaggaacag------------------------aagggggacccaaac---------------gaactctat---------ccg---ttt---gcctccctcaaatccctctttgggacagaccagtagttacagcaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,9fw,10rev,11fw,12rev","1fw,9fw,11fw","2rev,4rev,10rev,12rev",7,3,4
"AJ302647",">Ref.O.SN.99.99SE_MP1300.AJ302647","Ref","O","SN","99","99SE_MP1300","AJ302647",162,2013,1,30,1474,1503,"atgggtgcgagagcgtctgtgttgtcaggg","ctctttgggacagaccaatagttccagcaa",1,30,1,30,1,30,1984,2013,1474,1503,1984,2013,"atgggtgcgagagcgtctgtgttgtcagggagcaaattggatacatgggaacaaattaggttaaagccaggatgtaaaaagaaatacagactaaaacatttagtatgggcaagcagggagctggaaagattcgcatgtaatcctgagctactagaaactgcagagggcaatgaggaactgttacagcagttagagccagctctcaagacagggtcagaaagcctgcagtcactctggaacacaatagcagtgctctggtgtgttcacaaaagatttaaagttgaagatacacagcaggcaatacagaaactaaaggaagtaatggggagcaggaagtctgcaggtgccgctaaggaagacacaagcgcaaggcagacgggtcaaaactaccctgtagtagcaaatgcacagggacaaatggtacatcagtccctctcccccaggactttaaatgcatgggtaaaggcagtagaagaaaaggcctttaaccctgaaatcatccctatgttcatggcattgtcagagggagctattccttatgatactaataccatgctaaatgccataggaggacatcaaggggctttacaagtgctaaaagaagtaatcaatgaggaagcagcagaatgggatagaactcacccacaagcggcagggccattgcctccagggcagataagggaaccaacaggaagtgacatcgctgggacaactagcacccagcaagagcaagttcactggattactaggcccaaccaacctatcccagtaggagacatctatagaaaatggatagtgttagggttaaacaaagtagtaaaaatgtacagcccagtgagcatcttagatattagacagggaccaaaggaaccatttagagattatgtagatcggttctacaaaacattaagagctgaacaggcaactcaagaagtaaaaaattggatgacagaaaccctgcttgttcaaaatgccaacccagattgcaaacagattttgaaatcattagggccaggagctaccttagaagaaatgatgatagcttgtcagggagtaggaggaccaactcataaggccagagtactagcagaagcaatgtctgcagcccaagatctgaagggaggatactcagcagtatttatgcaaagagggcaaaacccaggtaggaaagggcctataaaatgtttcaattgtggaaaagaaggacatctagcaagaaattgtcgagcacctagaaagaaaggttgctggaaatgtggacaggaaggtcaccaaatgaaagattgcagaaatggaaaacaggcaaattttttagggaaatactggcctccggggggcacgaggccaggcaattatgcacagagacaagtgtccccatcagccccaccgatgacggaggaaatgaagggacaagaaaatcaggaacagaagggggaccagaacgaactctatccgtttgcctccctcaaatccctctttgggacagaccaatagttccagcaa","atgggtgcgagagcgtctgtgttgtcagggagcaaattggatacatgggaacaaattaggttaaagccaggatgtaaaaagaaatacagactaaaacatttagtatgggcaagcagggagctggaaagattcgcatgtaatcctgagctactagaaactgcagagggcaatgaggaactgttacagcagttagagccagctctcaagacagggtcagaaagcctgcagtcactctggaacacaatagcagtgctctggtgtgttcacaaaagatttaaagttgaagatacacagcaggcaatacagaaactaaaggaagtaatg------------ggg---------------------agc---------------aggaag------tctgcaggt---------------------gcc------gctaaggaagacaca------------------------------------agcgcaagg---------------------------------------------------------------------------------------------------cag------------------acgggtcaaaactaccctgtagtagcaaatgcacagggacaaatggtacatcagtccctctcccccaggactttaaatgcatgggtaaaggcagtagaa---gaaaaggcctttaaccctgaaatcatccctatgttcatggcattgtcagagggagctattccttatgatactaataccatgctaaatgccataggaggacatcaaggggctttacaagtgctaaaagaagtaatcaatgaggaagcagcagaatgggatagaactcacccacaagcggcagggccattgcctccagggcagataagggaaccaacaggaagtgacatcgctgggacaactagcacccagcaagagcaagttcactggattact------aggcccaaccaacctatc---ccagtaggagacatctatagaaaatggatagtgttagggttaaacaaagtagtaaaaatgtacagcccagtgagcatcttagatattagacagggaccaaaggaaccatttagagattatgtagatcggttctacaaaacattaagagctgaacaggcaactcaagaagtaaaaaattggatgacagaaaccctgcttgtt---caaaatgccaacccagattgcaaacagattttgaaatcattagggccaggagctaccttagaagaaatgatgatagcttgtcagggagtaggaggaccaactcataaggccagagtactagcagaagcaatgtctgc-------agcccaagatctgaaggg------------agga--tactcagcagtatttatgcaaaga---gggcaa---aacccaggt---aggaaa---gggcctataaaatgtttcaattgtggaaaagaaggacatctagcaagaaattgtcgagcacctagaaagaaaggttgctggaaatgtggacaggaaggtcaccaaatgaaagattgcagaaat------gga---aaacaggcaaattttttagggaaatactgg---cct---ccggggggc---------acg---aggccaggcaattatgcacagaga------------------------------caagtg------tccccatcagcc---------------------------------------------------ccaccgatg------------------acg---------------gaggaaatg------------aag---------------ggacaagaaaatcaggaacag------------------------aagggggaccagaac---------------gaactctat---------ccg---ttt---gcctccctcaaatccctctttgggacagaccaatagttccagcaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,11fw,12rev","1fw,11fw","2rev,4rev,12rev",5,2,3
"AY532635",">Ref.N.CM.02.DJO0131.AY532635","Ref","N","CM","02","DJO0131","AY532635",163,2013,1,30,1510,1539,"atgggtgcgagagcgtcagtgttaacaggg","ctctttggcaacgacctgtcatcacagtaa",1,30,1,30,1,30,1984,2013,1510,1539,1984,2013,"atgggtgcgagagcgtcagtgttaacagggggaaaattagatcaatgggaagcaatttatttgagaccagggggaaagaaaaaatacagaatgaaacatttagtatgggcaagcagggagctggaaagattcgcttgtaacccaggtctcatggacacagcgagcggctgtgcccagttactaaaccaattagaaccagctctcgcaacagggtcagaaggactgcgctccttatataacgccctagcagttctttattgtgtccatagtaacatacaggtacacaatacacaagaggcgttggacaagataaaagagataaaagagaaaaaggaacggcacaagtccgagccaaaaaacccagaagcaggggcagcggcagcagctgataacaatatcagtaggaattatcctctagtccagaatgctcaaggacaaatgatacatcagccgctgacacccagaactttaaatgcttgggtaaaagtgatagaggagaaggcctttaatccagaagtaataccaatgtttatggccttgtcagaaggggcaacacccgcagatctaaatactatgttaaatacagtaggaggacatcaggcagctatgcagatgctaaaggaagtcatcaatgaggaagcagcagaatgggacaggacgcatccartccctgygggaccattacccccaggacaactgagagaacctagaggaagtgatatagcagggacaactagtactctgmtggaacaggtgacctggatgacttctaatcctcctgttccagtaggagaaatctataaaaaatggatagttctggggttaaatagaattgtgagaatgtatagtcctgtcagcattctagagatcaaacaaggaccaaaagaaccctttagagattatgtagacaggttctacaaaactttaagagcagagcaggcatcacaggatgtaaagaattggatgacagaaacactcttagtacaaaatgcaaatccagattgtaaacagatactaaaagcattagggccagcagctaccttagaagaaatgatgacggcctgtcagggagtggggggaccagcgcataaggcaagagtgctagcagaggctatgtcacaggtacagacagcaactagtgtctttgcacaagggagaaactttaaaggcataaggagaaccattagatgtttcaattgtggcaaagagggccatttggcaagaaactgtaaggcccctagaagagggggctgttggaaatgtgggcaagaaggacatcaaatgaaagattgtaaaaatgaaggaagacaggctaattttttaggaaagggctggtctcccttcaaagggagaccaggcaacttcccccagacaacaacaacaaggaaagagcccacagccccgccactagagaattatgggtctcaggaggagaggagcacacaggggaaggagaggcaggagaacacagagaactctctatacccacccttaacttccctcagatcactctttggcaacgacctgtcatcacagtaa","atgggtgcgagagcgtcagtgttaacagggggaaaattagatcaatgggaagcaatttatttgagaccagggggaaagaaaaaatacagaatgaaacatttagtatgggcaagcagggagctggaaagattcgcttgtaacccaggtctcatggacacagcgagcggctgtgcccagttactaaaccaattagaaccagctctcgcaacagggtcagaaggactgcgctccttatataacgccctagcagttctttattgtgtccatagtaacatacaggtacacaatacacaagaggcgttggacaagataaaagagataaaa------------gag---------------------aaaaaggaacggcaca--agtccgagc---caaaaa-------------------------acccagaagcaggggcagcggcagca------------------------------gctgat------------------------------------------------------------------------------------------------------aacaat------------------atcagtaggaattatcctctagtccagaatgctcaaggacaaatgatacatcagccgctgacacccagaactttaaatgcttgggtaaaagtgatagag---gagaaggcctttaatccagaagtaataccaatgtttatggccttgtcagaaggggcaacacccgcagatctaaatactatgttaaatacagtaggaggacatcaggcagctatgcagatgctaaaggaagtcatcaatgaggaagcagcagaatgggacaggacgcatccartccctgygggaccattacccccaggacaactgagagaacctagaggaagtgatatagcagggacaactagtactctgmtggaacaggtgacctggatgact---------tctaatcctcctgtt---ccagtaggagaaatctataaaaaatggatagttctggggttaaatagaattgtgagaatgtatagtcctgtcagcattctagagatcaaacaaggaccaaaagaaccctttagagattatgtagacaggttctacaaaactttaagagcagagcaggcatcacaggatgtaaagaattggatgacagaaacactcttagta---caaaatgcaaatccagattgtaaacagatactaaaagcattagggccagcagctaccttagaagaaatgatgacggcctgtcagggagtggggggaccagcgcataaggcaagagtgctagcagaggctatg------------tcacaggtacagacagca------------act---agtgtctttgca------caaggg---agaaac---tttaaaggc---ataagg---agaaccattagatgtttcaattgtggcaaagagggccatttggcaagaaactgtaaggcccctagaagagggggctgttggaaatgtgggcaagaaggacatcaaatgaaagattgtaaaaatgaa---gga---agacaggctaattttttaggaaagggctgg---tct---cccttcaaa---------ggg---agaccaggcaacttcccccagacaaca---------------------acaacaaggaaa------gagcccacagcc---------------------------------------------------ccgccacta---gagaattatgggtctcag---------------gaggagagg------------agcaca---------caggggaaggagaggcaggagaac------------------------acagagaac---------------------tctctatac------ccaccc---tta---acttccctcagatcactctttggcaacgacctgtcatcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,10rev,11fw,12rev","1fw,11fw","2rev,10rev,12rev",5,2,3
"AJ006022",">Ref.N.CM.95.YBF30.AJ006022","Ref","N","CM","95","YBF30","AJ006022",164,2013,1,30,1510,1539,"atgggtgcgagagcgtcagtgttaacaggg","ctctttggcaacgacccgtcatcacagtaa",1,30,1,30,1,30,1984,2013,1510,1539,1984,2013,"atgggtgcgagagcgtcagtgttaacagggggaaaattagatcaatgggaatcaatttatttgagaccagggggaaagaaaaaatacagaatgaaacatttagtatgggcaagcagggagctggaaagattcgcttgtaacccaggtctcatggacacagcggacggctgtgccaagttactaaatcaattagaaccagctctcaagacagggtcagaagaactgcgctctttatataacgctctagcagttctttattgtgtccatagtaggatacagatacacaacacacaggaagctttggacaagataaaagagaaacaggaacagcacaagcccgagccaaaaaacccagaagcaggggcagcggcagcaactgatagcaatatcagtaggaattatcctctagtccagactgctcaaggacaaatggtacatcagccgctgacacccagaaccttaaatgcttgggtgaaagtgatagaggagaaggcctttagtccagaagtaataccaatgtttatggccttgtcagaaggggcaacgccctcagatctaaatactatgttaaatacagtagggggacatcaggcagcaatgcagatgctgaaggaagtcatcaatgaggaagcagcagactgggataggacacatccagtccctgtgggaccactacccccagggcaactgagagaccctagaggaagtgatatagcaggaacaactagcaccctggcagaacaggtggcttggatgactgctaatcctcctgttccagtaggagatatttatagaagatggatagtcctggggttaaacagaattgtgagaatgtatagtcctgtcagcattctagagatcaaacaaggaccaaaagaacccttcagagactatgtagacaggttctacaaaactctaagagcagagcaggcaacacaggaagtaaagaattggatgacagaaacactcttagtacaaaatgcaaacccagattgtaaacagctcctaaaagcattagggccaggagctaccttagaagagatgatgacggcctgccagggagtggggggaccagcacataaggcaagagtgctagcagaggctatgtcacaggtgcagcagccaacaactagtgtctttgcacaaaggggaaactttaaaggcataaggaaacccattaaatgtttcaattgtggcaaagagggccatttggcaagaaactgtaaggcccctagaagaggaggctgttggaagtgtgggcaagaaggacatcaaatgaaagattgtaaaaatgaaggaagacaggctaattttttagggaagagctggtctcccttcaaagggagaccaggaaacttcccccagacaacaacaaggaaagagcccacagccccgccactagagagttatgggtttcaggaggagaagagcacacaggggaaggagatgcaggagaaccaggagaggacagagaactctctgtacccacctttaacttccctcagatcactctttggcaacgacccgtcatcacagtaa","atgggtgcgagagcgtcagtgttaacagggggaaaattagatcaatgggaatcaatttatttgagaccagggggaaagaaaaaatacagaatgaaacatttagtatgggcaagcagggagctggaaagattcgcttgtaacccaggtctcatggacacagcggacggctgtgccaagttactaaatcaattagaaccagctctcaagacagggtcagaagaactgcgctctttatataacgctctagcagttctttattgtgtccatagtaggatacagatacacaacacacaggaagctttggacaagataaaagagaaacag------------gaacagcacaagcccgagccaa--aaa---------------acccag------aagcag-gg------------------------------gca---gcggcagcaact---------------------------------gat------------------------------------------------------------------------------------------------------agcaat------------------atcagtaggaattatcctctagtccagactgctcaaggacaaatggtacatcagccgctgacacccagaaccttaaatgcttgggtgaaagtgatagag---gagaaggcctttagtccagaagtaataccaatgtttatggccttgtcagaaggggcaacgccctcagatctaaatactatgttaaatacagtagggggacatcaggcagcaatgcagatgctgaaggaagtcatcaatgaggaagcagcagactgggataggacacatccagtccctgtgggaccactacccccagggcaactgagagaccctagaggaagtgatatagcaggaacaactagcaccctggcagaacaggtggcttggatgact---------gctaatcctcctgtt---ccagtaggagatatttatagaagatggatagtcctggggttaaacagaattgtgagaatgtatagtcctgtcagcattctagagatcaaacaaggaccaaaagaacccttcagagactatgtagacaggttctacaaaactctaagagcagagcaggcaacacaggaagtaaagaattggatgacagaaacactcttagta---caaaatgcaaacccagattgtaaacagctcctaaaagcattagggccaggagctaccttagaagagatgatgacggcctgccagggagtggggggaccagcacataaggcaagagtgctagcagaggctatg------------tcacaggtgcagcagccaacaact------------agtgtctttgca------caaagg---ggaaac---tttaaaggc---ataagg---aaacccattaaatgtttcaattgtggcaaagagggccatttggcaagaaactgtaaggcccctagaagaggaggctgttggaagtgtgggcaagaaggacatcaaatgaaagattgtaaaaatgaa---gga---agacaggctaattttttagggaagagctgg---tct---cccttcaaa---------ggg---agaccaggaaacttcccccagacaaca------------------------acaaggaaa------gagcccacagcc---------------------------------------------------ccgccacta---gagagttatgggtttcag---------------gaggagaagagcaca------------------------------caggggaaggagatg------------------------caggagaaccaggagaggacagagaac---tctctgtac------ccacct---tta---acttccctcagatcactctttggcaacgacccgtcatcacagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"AJ271370",">Ref.N.CM.97.YBF106.AJ271370","Ref","N","CM","97","YBF106","AJ271370",165,2013,1,30,1507,1536,"atgggtgcgagagcgtcagtgttaacaggg","ctctttggcaacgacctgtcrtcgcagtaa",1,30,1,30,1,30,1984,2013,1507,1536,1984,2013,"atgggtgcgagagcgtcagtgttaacagggggaaaattagatcaatgggaagcaatttatttgaggccagggggaaagaaaaaatacagattgaaacatttagtatgggcaagcagggagctggaaagattcgcttgtaacccaggtctcatggacacagcgaatggctgtgcccagttaataaaccaattagaaccagctctcaagacagggtcagaaggactgcgctctttgtwtaacaccctggcagttctttattgtgtccatagtaacataccggtacacaatacacaagaggctttagacaagataaaagagaaacaggaacagcacaagtccgagccaaagaaaccagaagcagggacagcggcggcagctgacagcagtatcagtaggaattatcctctagtccagaatgctcaaggacaaatggtacatcagccgctgacacctagaactttaaatgcttgggtaaaagtaatagaggaaaaggcctttaatccagaaataataccaatgtttatggccttgtcagaaggggcaacgccctcagatctaaatagtatgttaaatacagtaggaggacatcaggcagctatgcagatgctaaaggaagtcatcaatgaggaagcggcggagtgggacaggacgcatccagcccctgtgggaccactacccccagggcaaatgagagaccctagaggaagtgatatagcagggacaactagtactctggcagaacaggtggcatggatgacttctaatcctcctattccagtaggagatatttatagaagatggatagttctggggttaaacagaattgtgagaatgtatagtcctgtcagcattctagagatcaagcaaggaccaaaagagccctttagagattatgtagacaggttctacaaaactttaagagcagagcaggcaacacaggatgtaaagaattggatgacagaaacactcttagtacaaaatgcaaacccagattgtaaacagatcctaaaagcattaggaccaggagctaccttagaagagatgatgacggcctgccagggagtagggggaccagcacataaggcaagagtgctagcagaggctatggcacaggcacaaacagcaactagtgtctttgtacaaaggggaaactttaagggcataagaaaaaccattaaatgttttaattgtggcaaagagggccatttggcaagaaactgtaaggcccctagaagaaggggctgttggaagtgtgggcaagaaggacatcaaatgaaagattgtaaaaatgagggaagmcaggctaattttttaggaaagggctggtctcccttcaaagggagaccaggaaacttcccccagacaacaacaaggagagagcccacagccccgccactagagagttatgggtctcaggaggagaagagcacacagggaaaggagatgcaggagaaccaggagaagacagagacctctctgtacccacccttaacttccctcagatcactctttggcaacgacctgtcrtcgcagtaa","atgggtgcgagagcgtcagtgttaacagggggaaaattagatcaatgggaagcaatttatttgaggccagggggaaagaaaaaatacagattgaaacatttagtatgggcaagcagggagctggaaagattcgcttgtaacccaggtctcatggacacagcgaatggctgtgcccagttaataaaccaattagaaccagctctcaagacagggtcagaaggactgcgctctttgtwtaacaccctggcagttctttattgtgtccatagtaacataccggtacacaatacacaagaggctttagacaagataaaagagaaacag------------gaa---------------------cag---------------cacaag------tccgag---------------------------------ccaaagaaaccagaagcagggaca---------------gcggcggcagctgac------------------------------------------------------------------------------------------------------agcagt------------------atcagtaggaattatcctctagtccagaatgctcaaggacaaatggtacatcagccgctgacacctagaactttaaatgcttgggtaaaagtaatagag---gaaaaggcctttaatccagaaataataccaatgtttatggccttgtcagaaggggcaacgccctcagatctaaatagtatgttaaatacagtaggaggacatcaggcagctatgcagatgctaaaggaagtcatcaatgaggaagcggcggagtgggacaggacgcatccagcccctgtgggaccactacccccagggcaaatgagagaccctagaggaagtgatatagcagggacaactagtactctggcagaacaggtggcatggatgact---------tctaatcctcctatt---ccagtaggagatatttatagaagatggatagttctggggttaaacagaattgtgagaatgtatagtcctgtcagcattctagagatcaagcaaggaccaaaagagccctttagagattatgtagacaggttctacaaaactttaagagcagagcaggcaacacaggatgtaaagaattggatgacagaaacactcttagta---caaaatgcaaacccagattgtaaacagatcctaaaagcattaggaccaggagctaccttagaagagatgatgacggcctgccagggagtagggggaccagcacataaggcaagagtgctagcagaggctatg------------gcacaggcacaaaca---------------------gcaactagtgtctttgtacaaagg---ggaaac---tttaagggc---ataaga---aaaaccattaaatgttttaattgtggcaaagagggccatttggcaagaaactgtaaggcccctagaagaaggggctgttggaagtgtgggcaagaaggacatcaaatgaaagattgtaaaaatgag---gga---agmcaggctaattttttaggaaagggctgg---tct---cccttcaaa---------ggg---agaccaggaaacttcccccagacaaca------------------------acaaggaga------gagcccacagcc---------------------------------------------------ccgccacta---gagagttatgggtctcag---------------gaggagaag------------agcacacagggaaaggagatgcaggagaaccaggagaag------------------------acagagacc---------------------tctctgtac------ccaccc---tta---acttccctcagatcactctttggcaacgacctgtcrtcgcagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"HQ179987",">Ref.P.CM.06.U14788.HQ179987","Ref","P","CM","06","U14788","HQ179987",166,2013,1,30,1459,1488,"atgggtgcgagagcgtcagtgttgacaggg","ctctttgggacagaccagtaataccagtaa",1,30,1,30,1,30,1984,2013,1459,1488,1984,2013,"atgggtgcgagagcgtcagtgttgacagggggccgattggatgcatgggaaagaattaggcttagaccaggaggtaagaaaaaatataagctaaaacatgtagtatgggcaagcagagagctggaaagatttgcatgtaatcctgggcttatggaaacagcggaaggctgcgaaaaattattagagcagttagaaccagctctcagaacaggctcygatggcctgcagtctctttggaacaccctagtagttytatggtgtgttcacaaaagaatagagataagtgacacacagcaggccattacaaaatggaaggaggaaatgcagaaaagaaagaaaacatcagagggcagcactggaacaagtcaaaactatcctatcgtgcagaatgcccaggggcaaatgacccatatgccgctgtcccccaggacgctgaatgcctgggtgaaggcagtagaagaaaaagccttcaaccctgaaattatccctatgtttatggccttgtcagaaggggctatacctgatgacatcaataccatgcttaatgcagtaggcggacatcagggagcgttgcaggtgttgaaagaggtaattaatgaagaggctgcagaatgggatagaacacatcccgttccagtaggaccattaccaccagggcagcttagagaaccaacaggaggggatattgcaggaaccactagtaccaaacaggaacagataacctggatgacaaggaacaatcctgtaccagtaggggacatctatagaaartggatagtgttggggctcaataaagtggtaaaaatgtactgccccgttagcattctggacataaagcagggacctaaggaaccatttagagattatgtagayagattctacaaaaccctcagagcagagcaagccagtcaggaagtaaaaagttggatgacagacaccttactagtacaaaatgctaatccagattgyaagcagattttgaaagctctgggaccaggtgccaccttagaagaaatgatgaatgcctgtcaaggagtagggggaccaacacataaggccagggtcttggcagaagctatggcagcagctaatcaagctagccaagaattaaaaggagggtatacaacagtttttatgcagagtggacagagaaagccagttaagtgctttaactgtggaaaagtaggacacatagcaaagaactgcaaggcacctagaagaaggggrtgttggaagtgtggacaggaaggtcatcaaatgaaagactgcaaatcaggaagacaggcaaattttttagggaagatctggcctccggggggcaagaggccaggcaactatgtacagaaacaagtacaaccgacagccccacctatggaggaggaggagatgactcagaacaagcagarggaggaaaaggaggacgagaaagagttgtaccctttagcctccctcaaatcactctttgggacagaccagtaataccagtaa","atgggtgcgagagcgtcagtgttgacagggggccgattggatgcatgggaaagaattaggcttagaccaggaggtaagaaaaaatataagctaaaacatgtagtatgggcaagcagagagctggaaagatttgcatgtaatcctgggcttatggaaacagcggaaggctgcgaaaaattattagagcagttagaaccagctctcagaacaggctcygatggcctgcagtctctttggaacaccctagtagttytatggtgtgttcacaaaagaatagagataagtgacacacagcaggccattacaaaatggaaggaggaaatg------------cag---------------------aaa---------------agaaag------aaaaca---------------------------------tcagagggcagcact------------------------------------ggaaca------------------------------------------------------------------------------------------------------------------------------agtcaaaactatcctatcgtgcagaatgcccaggggcaaatgacccatatgccgctgtcccccaggacgctgaatgcctgggtgaaggcagtagaa---gaaaaagccttcaaccctgaaattatccctatgtttatggccttgtcagaaggggctatacctgatgacatcaataccatgcttaatgcagtaggcggacatcagggagcgttgcaggtgttgaaagaggtaattaatgaagaggctgcagaatgggatagaacacatcccgttccagtaggaccattaccaccagggcagcttagagaaccaacaggaggggatattgcaggaaccactagtaccaaacaggaacagataacctggatgaca---------aggaacaatcctgta---ccagtaggggacatctatagaaartggatagtgttggggctcaataaagtggtaaaaatgtactgccccgttagcattctggacataaagcagggacctaaggaaccatttagagattatgtagayagattctacaaaaccctcagagcagagcaagccagtcaggaagtaaaaagttggatgacagacaccttactagta---caaaatgctaatccagattgyaagcagattttgaaagctctgggaccaggtgccaccttagaagaaatgatgaatgcctgtcaaggagtagggggaccaacacataaggccagggtcttggcagaagctatggcagc-------agctaatcaagctagccaagaattaaaaggaggg--tatacaacagtttttatgcagagt------------------gga---cagaga---aagccagttaagtgctttaactgtggaaaagtaggacacatagcaaagaactgcaaggcacctagaagaaggggrtgttggaagtgtggacaggaaggtcatcaaatgaaagactgcaaatca------gga---agacaggcaaattttttagggaagatctgg---cct---ccggggggc---------aag---aggccaggcaactatgtacagaaa------------------------------caagta------caaccgacagcc---------------------------------------------------ccacctatg---gag------------gag---------------gaggagatg---act------cag---------------aacaagcagarggaggaaaag------------------------gaggacgag---------------aaa---gagttgtac---------cct---tta---gcctccctcaaatcactctttgggacagaccagtaataccagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,5fw,10rev,11fw,12rev","1fw,5fw,11fw","4rev,10rev,12rev",6,3,3
"GU111555",">Ref.P.FR.09.RBF168.GU111555","Ref","P","FR","09","RBF168","GU111555",167,2013,1,30,1465,1494,"atgggtgcgagagcgtcagtgttgacaggg","ctctttgggacagaccagtaataccagtaa",1,30,1,30,1,30,1984,2013,1465,1494,1984,2013,"atgggtgcgagagcgtcagtgttgacagggggccgattggatgcatgggaaagaattaggcttaagccaggaagtaagaaaaaatatatgctaaaacatatagtatgggcaagcagagagctggaaagatttgcatgtaatcctgagcttatggaaacagcagaaggctgtgaaaaattattagagcagttagaaccagctctcagaacaggttctgatggcctgcagtctctttggaacaccctagtagttttatggtgtgttcacagaagagtrgatataagtgacacacagcaggccattacaaaatggaaggaggaaatgcagagaagaaagaaagcactagagggcagcactggaactggaacaagtcaaaactatcctattgtgcagaatgcccaggggcaaatgacccatctgccgctgtctcccaggacgctgaatgcctgggtgaaggcagtagaagagaaggccttcaaccctgaaattatccctatgtttatggccttgtcagaagggtctatacccgatgacattaatactatgctcaatgcagtaggcggacatcagggagcrttrcaggtgttgaaagargtgattaatgaagaggctgcagaatgggatagaacacatcctgttccwgtrggaccgttaccaccagggcagcttagagacccaacaggaggggatattgcaggaaccactagtaacaagcaggaacagataacctggacaacaaggaacaataatcctataccagtaggagatatctatagaaagtggatagtgttggggctcaataaagtggtaaaaatgtatagccccattagcatcctggacataaagcagggacctaaggaaccatttagagattatgtagatagattctacaaaacyctcagagcagaacaagctagtcaggaagtaaagagttggatgacagacacattattaatacaaaatgctaatccagattgtaagcagattttgaaagctctgggaccaggggccaccttagaagaaatgatgaatgcctgtcaaggagtagggggaccaacacataaggccagggtcttagcagaagctatggcagcagctaatcaagctaaccaagatttaaaaggagggtatacaactgttttcatgcagagtggacagagawagccagttaagtgctttaactgtggaaaaataggacacatagcaaagaactgtaaggcacctaggagaaaaggatgctggaagtgtggacaggaaggtcatcaaatgaaagactgcaaatcaggaagacaggcaaattttttaggaaagatctggcctcctgggggcaagaggccaggcaactatgtacagaaacaagtacaaccaacagccccacctatggaggaggacgagatgacccgggacaagcagagggagraggaggaggasgaggaggaataccctttaacctccctcagatcactctttgggacagaccagtaataccagtaa","atgggtgcgagagcgtcagtgttgacagggggccgattggatgcatgggaaagaattaggcttaagccaggaagtaagaaaaaatatatgctaaaacatatagtatgggcaagcagagagctggaaagatttgcatgtaatcctgagcttatggaaacagcagaaggctgtgaaaaattattagagcagttagaaccagctctcagaacaggttctgatggcctgcagtctctttggaacaccctagtagttttatggtgtgttcacagaagagtrgatataagtgacacacagcaggccattacaaaatggaaggaggaaatg------------cag---------------------aga---------------agaaag------aaagcacta---gag------------------------------ggcagcact------------------------------------ggaactgga------------------------------------------------------------------------------------------------------------------------acaagtcaaaactatcctattgtgcagaatgcccaggggcaaatgacccatctgccgctgtctcccaggacgctgaatgcctgggtgaaggcagtagaa---gagaaggccttcaaccctgaaattatccctatgtttatggccttgtcagaagggtctatacccgatgacattaatactatgctcaatgcagtaggcggacatcagggagcrttrcaggtgttgaaagargtgattaatgaagaggctgcagaatgggatagaacacatcctgttccwgtrggaccgttaccaccagggcagcttagagacccaacaggaggggatattgcaggaaccactagtaacaagcaggaacagataacctggacaaca------aggaacaataatcctata---ccagtaggagatatctatagaaagtggatagtgttggggctcaataaagtggtaaaaatgtatagccccattagcatcctggacataaagcagggacctaaggaaccatttagagattatgtagatagattctacaaaacyctcagagcagaacaagctagtcaggaagtaaagagttggatgacagacacattattaata---caaaatgctaatccagattgtaagcagattttgaaagctctgggaccaggggccaccttagaagaaatgatgaatgcctgtcaaggagtagggggaccaacacataaggccagggtcttagcagaagctatggcagc-------agctaatcaagctaaccaagatttaaaaggaggg--tatacaactgttttcatgcagagt------------------gga---cagaga---wagccagttaagtgctttaactgtggaaaaataggacacatagcaaagaactgtaaggcacctaggagaaaaggatgctggaagtgtggacaggaaggtcatcaaatgaaagactgcaaatca------gga---agacaggcaaattttttaggaaagatctgg---cct---cctgggggc---------aag---aggccaggcaactatgtacagaaa------------------------------caagta------caaccaacagcc---------------------------------------------------ccacctatg---gag------------gag---------------gacgagatg------------acccgg------------gacaagcagagggagraggag------------------------gaggasgag---------------------gaggaatac---------cct---tta---acctccctcagatcactctttgggacagaccagtaataccagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,10rev,11fw,12rev","1fw,11fw","10rev,12rev",4,2,2
"U42720",">Ref.CPZ.CD.90.ANT.U42720","Ref","CPZ","CD","90","ANT","U42720",168,2013,1,30,1549,1578,"atgggagcgggggcgtctgttttgagggga","ctctttggcaaagaccaatgatggaagttc",1,30,1,30,1,30,1984,2013,1549,1578,1984,2013,"atgggagcgggggcgtctgttttgaggggagagaagctagatacatgggaaagtatcaggcttcggcccggtggcaagaaaaagtacatgataaaacatctggtttgggcaagatcggagctgcagcgttttgcgctcagctcctcccttctagaaacatcagaaggttgtgaaaaggctatccatcaattgagcccttccatagaaataagatcccctgaaataatatctttgtttaacaccatttgtgttctgtggtgcgtacataaaggggaaaagataaaagacacagaacaagccgttaaaacagtgaaaatgaaagtaatgcagacacaagcagaaacaggaagtagccaaaccgcaagcagaggcatgcttctgcggctgctcctgttaaacaaacagtggtgtcagcgacatcttagtggcgaagggagaaattaccccatcatagtggatgcaggaggaatagcaaggcatcagccactgacaccaagaaccttaaatgcctgggtaaagtgtgtagaagagaaaaatttcaatccagaagtcatccctatgttttctgctttatcagaaggggcaactcctcatgatttaaacaccatgcttaatgcagttggggaccatcaaggagccatgcaggtgctaaaagaagtaatcaatgaggaagcagctgagtgggataggttacaccccactcatgcaggaccagtacaggcaggacaattaagggaaccaacaggaagtgatatagcagggacaacaagcacagtgcaggagcagatgcaatggatgtcaacacctcaacagaatggaggagtcccagtaggggacatctataagagatggatcatcatgggattaaataaggtggtcaggangtatagtccagtcagcattctagagataaaacaaggaccaaaagagcccttcagagattatgtggatagattctataaaacaattagagcagaacaggcttcacagcctgtgaaagcctggatgacagaaaccttgttaatccaaaatgccaatccagattgcaaacacatcctgaaggctttgggaacaggagcctccttagaagaaatgttaacagcttgtcaaggagtaggaggcccagcccataaggcaagagtgttggcagaagctatggcttctgctaataatgcacagggaaccgcagtctttctgcagagaggcaatggaaatagaggaggaaaaagacctctcaaatgttttaactgcggtaaagagggccatactgcaagaaattgcaaggccccaagaaggaaaggctgctggagatgtggacaggaaggacaccagcttaaaaactgtccagcaacaaatacaggaaaagtaaattttttagggaaaccgacccccacgtggtgggggtgcagaccagggaactttgtgcagaaggaggaagtagtggagccaacagctccacccatagagatctatcaggaggagcacaagaggactcagaagggtctcaagggggaggaggaactacctccctcgtattccctgaaatccctctttggcaaagaccaatgatggaagttc","atgggagcgggggcgtctgttttgaggggagagaagctagatacatgggaaagtatcaggcttcggcccggtggcaagaaaaagtacatgataaaacatctggtttgggcaagatcggagctgcagcgttttgcgctcagctcctcccttctagaaacatcagaaggttgtgaaaaggctatccatcaattgagcccttccatagaaataagatcccctgaaataatatctttgtttaacaccatttgtgttctgtggtgcgtacataaaggggaaaagataaaagacacagaacaagcc---gttaaaacagtg------aaaatgaaagtaatg---------------------------------------------------------------------------------------------------cagacacaagca---------------------------------gaaacagga--------------agtagccaaaccgcaagcagaggcatgcttctgcggctgctcctgttaaacaaacagtggtgtcagcgacatctt-agtggc------------------------gaagggagaaattaccccatcatagtggatgcaggaggaatagcaaggcatcagccactgacaccaagaaccttaaatgcctgggtaaagtgtgtagaa---gagaaaaatttcaatccagaagtcatccctatgttttctgctttatcagaaggggcaactcctcatgatttaaacaccatgcttaatgcagttggggaccatcaaggagccatgcaggtgctaaaagaagtaatcaatgaggaagcagctgagtgggataggttacaccccactcatgcaggaccagtacaggcaggacaattaagggaaccaacaggaagtgatatagcagggacaacaagcacagtgcaggagcagatgcaatggatgtcaacacctcaacagaatggaggagtc---ccagtaggggacatctataagagatggatcatcatgggattaaataaggtggtcaggangtatagtccagtcagcattctagagataaaacaaggaccaaaagagcccttcagagattatgtggatagattctataaaacaattagagcagaacaggcttcacagcctgtgaaagcctggatgacagaaaccttgttaatc---caaaatgccaatccagattgcaaacacatcctgaaggctttgggaacaggagcctccttagaagaaatgttaacagcttgtcaaggagtaggaggcccagcccataaggcaagagtgttggcagaagctatggcttc-------tgctaataatgcaca------------------g--ggaaccgcagtctttctgcagaga---ggcaatggaaatagagga---ggaaaa---agacctctcaaatgttttaactgcggtaaagagggccatactgcaagaaattgcaaggccccaagaaggaaaggctgctggagatgtggacaggaaggacaccagcttaaaaactgtccagcaacaaataca---ggaaaagtaaattttttagggaaaccg------acc---cccacgtgg------tgggggtgcagaccagggaactttgtgcagaaggag------------------------gaagtagtg------gagccaacagct---------------------------------------------------ccacccata---gagatctat------cag---------------gaggag---------------cacaagagg---actcagaagggtctcaagggggag------------------------------------gag------------------gaactacct---------ccc---tcg---tattccctgaaatccctctttggcaaagaccaatgatggaagttc","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,4rev,10rev,11fw,12rev","1fw,11fw","4rev,10rev,12rev",5,2,3
"DQ373066",">Ref.CPZ.CM.05.SIVcpzMT145.DQ373066","Ref","CPZ","CM","05","SIVcpzMT145","DQ373066",169,2013,1,30,1447,1476,"atgggtgcgagagcgtcaatattaaccggg","ctctttggcaacgacccctcatcccagtaa",1,30,1,30,1,30,1984,2013,1447,1476,1984,2013,"atgggtgcgagagcgtcaatattaaccgggggaagattagatgcttgggaaaaaattaggctaagaccagggggaaagaaaaaatacatgatgaaacatttagtatgggcaagcagagagctggaaagattcgcttgtaaccctggtctaatggaaaatgcagaaggttgtgagaagttattgaaacagctagaaccagctcttaagacagggtcagaaggactgcgctctttatttaacactttggcagtcctttggtgtgtacataagagaatagaagtggaagacacacaacaggctttacagaaactgaaagctgccgtgaacccagaacagggtgaaacaccatcagctagcgcgaacttccctgtagtacgaaacgctcagggacagttgacgcataatccaatatcacccagaaccctaaatgcctgggtaaaagcagtagaagaaaaagctttcaatccagaggtcataccaatgttcatggcattatcagaaggggcaacgcctcaagacctcaatactatgctaaatacaataggaggacatcaggcagccatgcaaattctaaaagaagtaatcaatgatgaggctgctgagtgggacaggacacaccctacccatgcagggcctatagctccaggacaaatgagggaaccaagaggcagtgacatagcaggcactactagctccctagaggagcaagtagggtggatgacagcaaaccctcctattccagtaggagatatttatagaagatggatagtcctggggttaaataaaatagttaaaatgtacagtcctgttagcattttggacattaaacaaggaccaaaagagcctttcagggactatgtagacaggttctacaagaccttaagggctgaacaagcatcacaggatgttaaaaattggatgacagacaccctgttgatacagaatgctaacccagactgtaaaaacatcttaagagcattaggaccaggagccactctagaagaaatgatgacagcttgtcaaggggtaggaggaccctcacataaggctagagtgctggcagaagccatgagccaggtaaacaaaacagaaatctttatgcaaagagggggacaaaatagacctcctaataaaaagattaaatgctttaattgtggaaaagaaggacacctagcaaggaactgcagggcaccccgaagaaagggctgctggaagtgtggacaggagggacatcagatgaaagattgtaatcaaaataatggaaggattaattttttaggaaaaaattggcctccctggggggggaggccagggaactatgtgcaaggcaggaaggaaccaacagctccacctatggaatccttcggatttcaggaggagaagaaagtcaaggaggaggtgagggaggagagcaagccgccgtctcctttaacttccctcaaatcactctttggcaacgacccctcatcccagtaa","atgggtgcgagagcgtcaatattaaccgggggaagattagatgcttgggaaaaaattaggctaagaccagggggaaagaaaaaatacatgatgaaacatttagtatgggcaagcagagagctggaaagattcgcttgtaaccctggtctaatggaaaatgcagaaggttgtgagaagttattgaaacagctagaaccagctcttaagacagggtcagaaggactgcgctctttatttaacactttggcagtcctttggtgtgtacataagagaatagaagtggaagacacacaacaggctttacagaaactgaaa---------------------------------------------------------------------------------------------------------------------------gctgccgtg---------------------------------aacccagaa---------------------------------------------------------------------------------------------------cagggtgaa---acaccatcagctagcgcgaacttccctgtagtacgaaacgctcagggacagttgacgcataatccaatatcacccagaaccctaaatgcctgggtaaaagcagtagaa---gaaaaagctttcaatccagaggtcataccaatgttcatggcattatcagaaggggcaacgcctcaagacctcaatactatgctaaatacaataggaggacatcaggcagccatgcaaattctaaaagaagtaatcaatgatgaggctgctgagtgggacaggacacaccctacccatgcagggcctatagctccaggacaaatgagggaaccaagaggcagtgacatagcaggcactactagctccctagaggagcaagtagggtggatgaca---------gcaaaccctcctatt---ccagtaggagatatttatagaagatggatagtcctggggttaaataaaatagttaaaatgtacagtcctgttagcattttggacattaaacaaggaccaaaagagcctttcagggactatgtagacaggttctacaagaccttaagggctgaacaagcatcacaggatgttaaaaattggatgacagacaccctgttgata---cagaatgctaacccagactgtaaaaacatcttaagagcattaggaccaggagccactctagaagaaatgatgacagcttgtcaaggggtaggaggaccctcacataaggctagagtgctggcagaagccatg------------agccaggtaaac------------------------aaaacagaaatctttatgcaaagagggggacaa---aatagacct---cctaat---aaaaagattaaatgctttaattgtggaaaagaaggacacctagcaaggaactgcagggcaccccgaagaaagggctgctggaagtgtggacaggagggacatcagatgaaagattgtaatcaaaataatgga---agg---attaattttttaggaaaaaattgg---cct---ccctggggg---------ggg---aggccagggaactatgtgcaaggc------------------------------aggaag------gaaccaacagct---------------------------------------------------ccacctatg---gaatccttcggatttcag---------------gaggagaag---aaa------------------------------gtcaaggaggaggtg------------------------agggaggag------------agcaag---ccgccgtct---------cct---tta---acttccctcaaatcactctttggcaacgacccctcatcccagtaa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,10rev,12rev",6,2,4
"AF103818",">Ref.CPZ.US.85.US_Marilyn.AF103818","Ref","CPZ","US","85","US_Marilyn","AF103818",170,2013,1,30,1492,1521,"atgggtgcgagagcgtcagttctgacaggg","ctctttggcagcgacccctcctcagaataa",1,30,1,30,1,30,1984,2013,1492,1521,1984,2013,"atgggtgcgagagcgtcagttctgacagggggacgattagatgcttgggaaaagattcggcttagacctgggggaaagaaaaagtatatgatgaaacatttagtttgggcaagcagggagctggaaagatttgcttgtaacccaggtctaatggaaacagcagacggctgtctccaattattaaaacagttagaaccagctctaaaaacaggatcggaaggcctgcgatcgctctttaacaccttagcggtcctttggtgtgtccacagtagggtgacagtggaggatacgcagcaggccttagtgaaactgaaagaggtagtgcagttgcagaaacaacaggaagaaaaagaacaacagcaacaggaggcaagtggcagtaacattggtagcagcaattacccagtaatacagaacgctcagggacagatggtacatcaggcaatgtctcccagaactttaaatgcctgggtaaaagcggtagaagaaaaggcctttaacccggaagtcatcccgatgttcatggccttatcagaaggggcgactccccaagatgtcaacactatgctcaatgctatagggggacatcagggagcaatgcaagttttaaaggaagccatcaatgaggaagcagcagattgagatagaacacatcctctgcatgcaggccctatagcaccagggcagatgagagaacccaggggaagtgacattgcaggaaccaccagcaccttgcaagaacaagtgggctggatgacagcaaacccacccattccagtaggagacatatatagaagatgggtggtcctagggcttaataaagtagtaaaaatgtactgtcccgttggtatcttagatatcaagcagggacctaaagagccctttagagactatgtagacaggttctacaaaacattaagagcagaacaagcttctccagaagtaaaaacctggatgacagagacccttttggtacaaaacgctaatccagattgtaaaactattttaagagccttgggacctggagccaccctagaagaaatggtgacagcatgtcaaggagtgggaggacccgctcataaggcaagggtcttagctgaagccatgtgccaaatgaaaaacccctcaagcgtatttctacagaaaggaaacgctgggaagccagggagaaaaatcaaatgttttaattgtggcaaagagggacatctagccagaaattgcagggctccaagaagaaaagggtgctggaagtgtgggcaggaaggacatcaaatgaaagactgcacagcaggaaacagacaggctaattttttagggaaacattggtccccatcgtggagcgggggatcaaagagaccagggaacttcctggaaaacaggaaggagcccacagctccaccaatagaggatttcgggtatcaagaagagacagtgacacaggagaaacagggaaaggaaaaggagccctttcagctaacttccctcaaatcactctttggcagcgacccctcctcagaataa","atgggtgcgagagcgtcagttctgacagggggacgattagatgcttgggaaaagattcggcttagacctgggggaaagaaaaagtatatgatgaaacatttagtttgggcaagcagggagctggaaagatttgcttgtaacccaggtctaatggaaacagcagacggctgtctccaattattaaaacagttagaaccagctctaaaaacaggatcggaaggcctgcgatcgctctttaacaccttagcggtcctttggtgtgtccacagtagggtgacagtggaggatacgcagcaggccttagtgaaactgaaagaggtagtgcagttgcaga--aac---------------------aac---------------aggaag------aaaaag--------------------------------------------aacaaca---------------------------------gcaacagga---------------------------------------------------------------------------------ggcaagt--ggcagtaacatt------------------ggtagcagcaattacccagtaatacagaacgctcagggacagatggtacatcaggcaatgtctcccagaactttaaatgcctgggtaaaagcggtagaa---gaaaaggcctttaacccggaagtcatcccgatgttcatggccttatcagaaggggcgactccccaagatgtcaacactatgctcaatgctatagggggacatcagggagcaatgcaagttttaaaggaagccatcaatgaggaagcagcagattgagatagaacacatcctctgcatgcaggccctatagcaccagggcagatgagagaacccaggggaagtgacattgcaggaaccaccagcaccttgcaagaacaagtgggctggatgaca---------gcaaacccacccatt---ccagtaggagacatatatagaagatgggtggtcctagggcttaataaagtagtaaaaatgtactgtcccgttggtatcttagatatcaagcagggacctaaagagccctttagagactatgtagacaggttctacaaaacattaagagcagaacaagcttctccagaagtaaaaacctggatgacagagacccttttggta---caaaacgctaatccagattgtaaaactattttaagagccttgggacctggagccaccctagaagaaatggtgacagcatgtcaaggagtgggaggacccgctcataaggcaagggtcttagctgaagccatg------------tgccaaatgaaaaac---------------------ccctcaagcgtatttctacagaaa---ggaaac---gctgggaag---ccaggg---agaaaaatcaaatgttttaattgtggcaaagagggacatctagccagaaattgcagggctccaagaagaaaagggtgctggaagtgtgggcaggaaggacatcaaatgaaagactgcacagcagga---aac---agacaggctaattttttagggaaacattggtcccca---tcgtggagcgggggatcaaag---agaccagggaacttcctggaaaac------------------------------aggaag------gagcccacagct---------------------------------------------------ccaccaata---gaggatttcgggtatcaa---------------gaagagaca------------------------------------gtgacacaggagaaacag------------------ggaaaggaaaag---------------------gagcccttt---------cag---cta---acttccctcaaatcactctttggcagcgacccctcctcagaataa","Wei2004|HIV1_REF_2010_gag_DNA.fasta","1fw,2rev,4rev,10rev,11fw,12rev","1fw,11fw","2rev,4rev,10rev,12rev",6,2,4
