Package: funOmics
Title: Aggregating Omics Data into Higher-Level Functional
        Representations
Version: 1.5.0
Authors@R: c(
           person("Elisa", "Gomez de Lope", role = c("aut", "cre"), email = "elisa.gomezdelope@uni.lu",comment=c(ORCID="0000-0002-7115-7393")),
           person("Enrico", "Glaab", role = "ctb", email = "enrico.glaab@uni.lu", comment = c(ORCID="0000-0003-3977-7469")))
Description: The 'funOmics' package ggregates or summarizes omics data into 
            higher level functional representations such as GO terms gene sets 
            or KEGG metabolic pathways. The aggregated data matrix represents
            functional activity scores that facilitate the analysis of 
            functional molecular sets while allowing to reduce dimensionality 
            and provide easier and faster biological interpretations. 
            Coordinated functional activity scores can be as informative as 
            single molecules!
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.1
URL: https://github.com/elisagdelope/funomics
BugReports: https://github.com/elisagdelope/funomics/issues
Depends: R (>= 4.4.0), NMF
Imports: NMF, pathifier, stats, KEGGREST, AnnotationDbi, org.Hs.eg.db,
        dplyr, stringr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), MultiAssayExperiment,
        SummarizedExperiment, airway
VignetteBuilder: knitr
VignetteIndexEntry: funomics_vignette Vignette
biocViews: Software, Transcriptomics, Metabolomics, Proteomics,
        Pathways, GO, KEGG
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/funOmics
git_branch: devel
git_last_commit: ccd72f2
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
Date/Publication: 2025-10-31
NeedsCompilation: no
Packaged: 2025-10-31 21:58:02 UTC; biocbuild
Author: Elisa Gomez de Lope [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7115-7393>),
  Enrico Glaab [ctb] (ORCID: <https://orcid.org/0000-0003-3977-7469>)
Maintainer: Elisa Gomez de Lope <elisa.gomezdelope@uni.lu>
