Hugo_Symbol;Entrez_Gene_Id;Center;NCBI_Build;Chromosome;Start_position;End_position;Strand;Variant_Classification;Variant_Type;Reference_Allele;Tumor_Seq_Allele1;Tumor_Seq_Allele2;dbSNP_RS;dbSNP_Val_Status;Tumor_Sample_Barcode;Matched_Norm_Sample_Barcode;Match_Norm_Seq_Allele1;Match_Norm_Seq_Allele2;Tumor_Validation_Allele1;Tumor_Validation_Allele2;Match_Norm_Validation_Allele1;Match_Norm_Validation_Allele2;Verification_Status;Validation_Status;Mutation_Status;Sequencing_Phase;Sequence_Source;Validation_Method;Score;BAM_file;Sequencer;TranscriptID;Exon;ChromChange;AAChange;COSMIC_Codon;COSMIC_Gene;Drug_Target;MA:link.var;MA;MA:variant;MA:protein.change;MA:Gene;MA:link.MSA;MA:link.PDB;MA:FImpact;MA:FI.score;MA:Cytoband;MA:Uniprot;MA:Refseq;MA:MSA_height;MA:Func.region;MA:TumorSuppressor;MA:Oncogene;;;;;;;;;;;
A2BP1;54715;hgsc.bcm.edu;36;16;7508327;7508327;+;Missense_Mutation;SNP;G;G;A;novel;unknown;TCGA-A6-2672-01A-01W-0833-10;TCGA-A6-2672-10A-01W-0833-10;G;G;.;.;.;.;Unknown;Unknown;Somatic;Phase_I;Capture;.;;;SOLID;NM_145893;exon2;c.G265A;p.A89T;.;.;.;http://getma.org/v1/?cm=var&var=hg18;16;7508327;G;A&fts=all;1;hg18;16;7508327;G;A;A69T;A2BP1;http://getma.org/v1/?cm=msa&ty=f&p=RFOX1_HUMAN&rb=1&re=200&var=A69T;http://getma.org/v1/pdb.php?prot=RFOX1_HUMAN&from=1&to=200&var=A69T;neutral;0.74;16p13.3;RFOX1_HUMAN;NP_061193;394;;;;;;
ABCA10;10349;hgsc.bcm.edu;36;17;64659790;64659790;+;Silent;SNP;A;A;C;novel;unknown;TCGA-A6-2672-01A-01W-0833-10;TCGA-A6-2672-10A-01W-0833-10;A;A;A;C;A;A;Unknown;Valid;Somatic;Phase_I;Capture;Illumina;;;SOLID;NM_080282;exon37;c.T4386G;p.A1462A;.;.;.;http://getma.org/v1/?cm=var&var=hg18;17;64659790;A;C&fts=all;1;hg18;17;64659790;A;C;A1462A;ABCA10;;;;;17q24;ABCAA_HUMAN;NP_525021;;;;;;;
ABCA10;10349;hgsc.bcm.edu;36;17;64698988;64698988;+;Silent;SNP;A;A;G;novel;unknown;TCGA-A6-2672-01A-01W-0833-10;TCGA-A6-2672-10A-01W-0833-10;A;A;A;G;A;A;Unknown;Valid;Somatic;Phase_I;Capture;Illumina;;;SOLID;NM_080282;exon18;c.T1935C;p.P645P;.;.;.;http://getma.org/v1/?cm=var&var=hg18;17;64698988;A;G&fts=all;1;hg18;17;64698988;A;G;P645P;ABCA10;;;;;17q24;ABCAA_HUMAN;NP_525021;;;;;;;
ABCA3;21;hgsc.bcm.edu;36;16;2290121;2290121;+;Silent;SNP;C;C;A;novel;unknown;TCGA-A6-2672-01A-01W-0833-10;TCGA-A6-2672-10A-01W-0833-10;C;C;C;A;C;C;Unknown;Valid;Somatic;Phase_I;Capture;Illumina;;;SOLID;NM_001089;exon13;c.G1497T;p.A499A;.;.;.;http://getma.org/v1/?cm=var&var=hg18;16;2290121;C;A&fts=all;1;hg18;16;2290121;C;A;A499A;ABCA3;;;;;16p13.3;ABCA3_HUMAN;NP_001080;;;;;;;
ABCA4;24;hgsc.bcm.edu;36;1;94263159;94263159;+;Missense_Mutation;SNP;G;G;T;novel;unknown;TCGA-A6-2672-01A-01W-0833-10;TCGA-A6-2672-10A-01W-0833-10;G;G;G;T;G;G;Unknown;Valid;Somatic;Phase_I;Capture;Illumina;;;SOLID;NM_000350;exon31;c.C4573A;p.L1525M;.;.;.;http://getma.org/v1/?cm=var&var=hg18;1;94263159;G;T&fts=all;1;hg18;1;94263159;G;T;L1525M;ABCA4;http://getma.org/v1/?cm=msa&ty=f&p=ABCA4_HUMAN&rb=1487&re=1595&var=L1525M;;medium;2375;1p22.1-p21;ABCA4_HUMAN;NP_000341;37;;;;;;
ACSM5;54988;hgsc.bcm.edu;36;16;20337086;20337086;+;Missense_Mutation;SNP;C;C;T;novel;unknown;TCGA-A6-2674-01A-02W-0831-10;TCGA-A6-2674-10A-01W-0831-10;C;C;C;T;C;C;Unknown;Valid;Somatic;Phase_I;Capture;454_PCR_WGA;;;SOLID;NM_017888;exon3;c.C409T;p.R137W;.;.;.;http://getma.org/v1/?cm=var&var=hg18;16;20337086;C;T&fts=all;1;hg18;16;20337086;C;T;R137W;ACSM5;http://getma.org/v1/?cm=msa&ty=f&p=ACSM5_HUMAN&rb=91&re=502&var=R137W;http://getma.org/v1/pdb.php?prot=ACSM5_HUMAN&from=91&to=502&var=R137W;medium;3205;16p12.3;ACSM5_HUMAN;NP_060358;396;;;;;;
ADCY2;108;hgsc.bcm.edu;36;5;7819897;7819897;+;Missense_Mutation;SNP;C;C;T;novel;unknown;TCGA-A6-2674-01A-02W-0831-10;TCGA-A6-2674-10A-01W-0831-10;C;C;C;T;C;C;Unknown;Valid;Somatic;Phase_I;Capture;454_PCR_WGA;;;SOLID;NM_020546;exon17;c.C2192T;p.A731V;.;.;.;http://getma.org/v1/?cm=var&var=hg18;5;7819897;C;T&fts=all;1;hg18;5;7819897;C;T;A731V;ADCY2;http://getma.org/v1/?cm=msa&ty=f&p=ADCY2_HUMAN&rb=601&re=800&var=A731V;;low;1845;5p15.3;ADCY2_HUMAN;NP_065433;68;;;;;;
APC;324;hgsc.bcm.edu;36;5;112192485;112192485;+;Nonsense_Mutation;SNP;C;C;T;novel;unknown;TCGA-A6-2674-01A-02W-0831-10;TCGA-A6-2674-10A-01W-0831-10;C;C;.;.;.;.;Unknown;Unknown;Somatic;Phase_I;Capture;.;;;SOLID;NM_001127511;exon12;c.C1606T;p.R536X; APC;ovary;NS;Substitution - Nonsense;0;.;.;http://getma.org/v1/?cm=var&var=hg18;5;112192485;C;T&fts=all;1;hg18;5;112192485;C;T;R554;APC;;;;;5q21-q22;APC_HUMAN;NP_000029;;;1
ASB16;92591;hgsc.bcm.edu;36;17;39610531;39610531;+;Missense_Mutation;SNP;G;G;A;novel;unknown;TCGA-A6-2674-01A-02W-0831-10;TCGA-A6-2674-10A-01W-0831-10;G;G;G;A;G;G;Unknown;Valid;Somatic;Phase_I;Capture;454_PCR_WGA;;;SOLID;NM_080863;exon4;c.G1091A;p.R364Q;.;.;.;http://getma.org/v1/?cm=var&var=hg18;17;39610531;G;A&fts=all;1;hg18;17;39610531;G;A;R364Q;ASB16;http://getma.org/v1/?cm=msa&ty=f&p=ASB16_HUMAN&rb=315&re=407&var=R364Q;;medium;2.19;17q21.31;ASB16_HUMAN;NP_543139;30;;;;;;
A2BP1;54715;hgsc.bcm.edu;36;16;7700697;7700697;+;Silent;SNP;A;A;G;novel;unknown;TCGA-A6-2676-01A-01W-0833-10;TCGA-A6-2676-10A-01W-0833-10;A;A;A;G;A;A;Unknown;Valid;Somatic;Phase_I;Capture;Illumina;;;SOLID;NM_145891;exon13;c.A1206G;p.S402S;.;.;.;http://getma.org/v1/?cm=var&var=hg18;16;7700697;A;G&fts=all;1;hg18;16;7700697;A;G;S381S;A2BP1;;;;;16p13.3;RFOX1_HUMAN;NP_061193;;;;;;;
ABAT;18;hgsc.bcm.edu;36;16;8769566;8769566;+;Missense_Mutation;SNP;G;G;A;novel;unknown;TCGA-A6-2676-01A-01W-0833-10;TCGA-A6-2676-10A-01W-0833-10;G;G;G;A;G;G;Unknown;Valid;Somatic;Phase_I;Capture;Illumina;;;SOLID;NM_000663;exon10;c.G619A;p.D207N;.;.;.;http://getma.org/v1/?cm=var&var=hg18;16;8769566;G;A&fts=all;1;hg18;16;8769566;G;A;D207N;ABAT;http://getma.org/v1/?cm=msa&ty=f&p=GABT_HUMAN&rb=76&re=446&var=D207N;http://getma.org/v1/pdb.php?prot=GABT_HUMAN&from=76&to=446&var=D207N;low;1.36;16p13.2;GABT_HUMAN;NP_065737;423;;;;;;
ABCA10;10349;hgsc.bcm.edu;36;17;64722504;64722505;+;Frame_Shift_Ins;INS;-;-;A;novel;unknown;TCGA-A6-2676-01A-01W-0833-10;TCGA-A6-2676-10A-01W-0833-10;-;-;-;A;-;-;Unknown;Valid;Somatic;Phase_I;Capture;Illumina;;;SOLID;NM_080282;exon10;c.942_943insT;p.F314fs;.;.;.;;;;;;;;;;;;;;;;;;;;;;;;;;;
ABCC3;8714;hgsc.bcm.edu;36;17;46108744;46108744;+;Silent;SNP;C;C;T;novel;unknown;TCGA-A6-2676-01A-01W-0833-10;TCGA-A6-2676-10A-01W-0833-10;C;C;C;T;C;C;Unknown;Valid;Somatic;Phase_I;Capture;Illumina;;;SOLID;NM_003786;exon23;c.C3174T;p.S1058S;.;.;.;http://getma.org/v1/?cm=var&var=hg18;17;46108744;C;T&fts=all;1;hg18;17;46108744;C;T;S1058S;ABCC3;;;;;17q22;MRP3_HUMAN;NP_003777;;;;;;;
ABHD12;26090;hgsc.bcm.edu;36;20;25248888;25248888;+;Silent;SNP;G;G;T;novel;unknown;TCGA-A6-2676-01A-01W-0833-10;TCGA-A6-2676-10A-01W-0833-10;G;G;G;T;G;G;Unknown;Valid;Somatic;Phase_I;Capture;Illumina;;;SOLID;NM_001042472;exon4;c.C489A;p.A163A;.;.;.;http://getma.org/v1/?cm=var&var=hg18;20;25248888;G;T&fts=all;1;hg18;20;25248888;G;T;A163A;ABHD12;;;;;20p11.21;ABD12_HUMAN;NP_056415;;;;;;;
ABR;29;hgsc.bcm.edu;36;17;908746;908746;+;Missense_Mutation;SNP;G;G;A;novel;unknown;TCGA-A6-2676-01A-01W-0833-10;TCGA-A6-2676-10A-01W-0833-10;G;G;G;A;G;G;Unknown;Valid;Somatic;Phase_I;Capture;Illumina;;;SOLID;NM_021962;exon11;c.C1294T;p.R432W;.;.;.;http://getma.org/v1/?cm=var&var=hg18;17;908746;G;A&fts=all;1;hg18;17;908746;G;A;R432W;ABR;http://getma.org/v1/?cm=msa&ty=f&p=ABR_HUMAN&rb=302&re=459&var=R432W;;low;1.73;17p13.3;ABR_HUMAN;NP_068781;44;;;;;;
ACAD11;84129;hgsc.bcm.edu;36;3;133820174;133820174;+;Missense_Mutation;SNP;C;C;T;novel;unknown;TCGA-A6-2676-01A-01W-0833-10;TCGA-A6-2676-10A-01W-0833-10;C;C;C;T;C;C;Unknown;Valid;Somatic;Phase_I;Capture;Illumina;;;SOLID;NM_032169;exon11;c.G1408A;p.A470T;.;.;.;http://getma.org/v1/?cm=var&var=hg18;3;133820174;C;T&fts=all;1;hg18;3;133820174;C;T;A470T;ACAD11;http://getma.org/v1/?cm=msa&ty=f&p=ACD11_HUMAN&rb=376&re=499&var=A470T;http://getma.org/v1/pdb.php?prot=ACD11_HUMAN&from=376&to=499&var=A470T;high;4315;3q22.1;ACD11_HUMAN;NP_115545;523;;;;;;
