##fileformat=VCFv4.0
##fileDate=20130330
##source=pindel
##reference=hs37d5
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##INFO=<ID=HOMLEN,Number=1,Type=Integer,Description="Length of base pair identical micro-homology at event breakpoints">
##INFO=<ID=PF,Number=1,Type=Integer,Description="The number of samples carry the variant">
##INFO=<ID=HOMSEQ,Number=.,Type=String,Description="Sequence of base pair identical micro-homology at event breakpoints">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=NTLEN,Number=.,Type=Integer,Description="Number of bases inserted in place of deleted code">
##FORMAT=<ID=PL,Number=3,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=RD,Number=1,Type=Integer,Description="Reference depth, how many reads support the reference">
##FORMAT=<ID=AD,Number=2,Type=Integer,Description="Allele depth, how many reads support this allele">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	sample
chr1	31163	.	T	<INS>	.	PASS	END=31163;HOMLEN=8;HOMSEQ=CACTCCAC;SVLEN=5;SVTYPE=INS	GT:AD	0/0:1,1
chr1	14355403	.	A	<DEL>	.	PASS	END=14355430;HOMLEN=5;HOMSEQ=TTGTG;SVLEN=-27;SVTYPE=DEL	GT:AD	0/0:1,1
chr1	35034657	.	G	GT	.	PASS	END=35034657;HOMLEN=6;HOMSEQ=TTTTTT;SVLEN=1;SVTYPE=INS	GT:AD	0/0:1,1
chr1	61027526	.	G	<DUP:TANDEM>	.	PASS	END=61027590;HOMLEN=0;SVLEN=64;SVTYPE=DUP:TANDEM;NTLEN=0	GT:AD	0/0:2,1
chr12	1029142	.	T	<RPL>	.	PASS	END=1029182;HOMLEN=0;SVLEN=-40;SVTYPE=RPL;NTLEN=51	GT:AD	0/0:23,1
