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@incollection{Murata:2014,
	address = {New York, NY},
	series = {Methods in {Molecular} {Biology}},
	title = {Detecting {Expressed} {Genes} {Using} {CAGE}},
	isbn = {978-1-4939-0805-9},
	url = {https://doi.org/10.1007/978-1-4939-0805-9_7},
	abstract = {Cap analysis of gene expression (CAGE) provides accurate high-throughput measurement of RNA expression. By the large-scale analysis of 5′ end of transcripts using CAGE method, it enables not only determination of the transcription start site but also prediction of promoter region. Here we provide a protocol for the construction of no-amplification non-tagging CAGE libraries for Illumina next-generation sequencers (nAnT-iCAGE). We have excluded the commonly used PCR amplification and cleavage of restriction enzyme to eliminate any potential biases. As a result, we achieved less biased simple preparation process.},
	language = {en},
	urldate = {2023-06-30},
	booktitle = {Transcription {Factor} {Regulatory} {Networks}: {Methods} and {Protocols}},
	publisher = {Springer},
	author = {Murata, Mitsuyoshi and Nishiyori-Sueki, Hiromi and Kojima-Ishiyama, Miki and Carninci, Piero and Hayashizaki, Yoshihide and Itoh, Masayoshi},
	editor = {Miyamoto-Sato, Etsuko and Ohashi, Hiroyuki and Sasaki, Hirotaka and Nishikawa, Jun-ichi and Yanagawa, Hiroshi},
	year = {2014},
	doi = {10.1007/978-1-4939-0805-9_7},
	keywords = {Cap analysis of gene expression (CAGE), Next-generation sequencing (NGS), Promoter, RNA expression, Transcription start site (TSS)},
	pages = {67--85},
	file = {Full Text PDF:/home/charles-plessy/Zotero/storage/UWEY9NQX/Murata et al. - 2014 - Detecting Expressed Genes Using CAGE.pdf:application/pdf},
}

@article{Haberle:2015,
author = {Haberle, Vanja and Forrest, Alistair R R and Hayashizaki, Yoshihide and Carninci, Piero and Lenhard, Boris},
title = {{CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses}},
journal = {Nucleic Acids Research},
volume = {Epub ahead of print},
number = {2015 Feb 4},
doi = {10.1093/nar/gkv054},
year = {2015}
}





