R: Differential Expression Analysis of NanoString nCounter Data

# Differential Expression Analysis of NanoString nCounter Data

## Documentation for package ‘NanoStringDiff’ version 1.41.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

NanoStringDiff-package | A short title line describing what the package does
createNanoStringSet | NanoStringSet object and constructors
createNanoStringSetFromCsv | NanoStringSet object and constructors
estNormalizationFactors | estimate normalization factors,include positive size factors, background noise, housekeeping size factors.
estNormalizationFactors-method | estimate normalization factors,include positive size factors, background noise, housekeeping size factors.
glm.LRT | perform gene-wise likelihood ratio test for NanoString Data
glm.LRT-method | perform gene-wise likelihood ratio test for NanoString Data
housekeepingControl | Acessor functions for the 'housekeepingControl' slot in a NanoStringSet object.
housekeepingControl-method | Acessor functions for the 'housekeepingControl' slot in a NanoStringSet object.
housekeepingControl<- | Acessor functions for the 'housekeepingControl' slot in a NanoStringSet object.
housekeepingControl<--method | Acessor functions for the 'housekeepingControl' slot in a NanoStringSet object.
housekeepingFactor | Acessor functions for the 'housekeepingFactor' slot in a NanoStringSet object.
housekeepingFactor-method | Acessor functions for the 'housekeepingFactor' slot in a NanoStringSet object.
housekeepingFactor<- | Acessor functions for the 'housekeepingFactor' slot in a NanoStringSet object.
housekeepingFactor<--method | Acessor functions for the 'housekeepingFactor' slot in a NanoStringSet object.
NanoStringData | A real 'NanoStringSet' object.
NanoStringDataNormalization | Normalize NanoStringData
NanoStringDataNormalization-method | Normalize NanoStringData
NanoStringDiff | A short title line describing what the package does
NanoStringSet | NanoStringSet object and constructors
NanoStringSet-class | NanoStringSet object and constructors
negativeControl | Acessor functions for the 'negativeControl' slot in a NanoStringSet object.
negativeControl-method | Acessor functions for the 'negativeControl' slot in a NanoStringSet object.
negativeControl<- | Acessor functions for the 'negativeControl' slot in a NanoStringSet object.
negativeControl<--method | Acessor functions for the 'negativeControl' slot in a NanoStringSet object.
negativeFactor | Acessor functions for the 'negativeFactor' slot in a NanoStringSet object.
negativeFactor-method | Acessor functions for the 'negativeFactor' slot in a NanoStringSet object.
negativeFactor<- | Acessor functions for the 'negativeFactor' slot in a NanoStringSet object.
negativeFactor<--method | Acessor functions for the 'negativeFactor' slot in a NanoStringSet object.
PlotsPositiveHousekeeping | Plots of positive controls and housekeeping genes
PlotsPositiveHousekeeping-method | Plots of positive controls and housekeeping genes
positiveControl | Acessor functions for the 'positiveControl' slot in a NanoStringSet object.
positiveControl-method | Acessor functions for the 'positiveControl' slot in a NanoStringSet object.
positiveControl<- | Acessor functions for the 'positiveControl' slot in a NanoStringSet object.
positiveControl<--method | Acessor functions for the 'positiveControl' slot in a NanoStringSet object.
positiveFactor | Acessor functions for the 'positiveFactor' slot in a NanoStringSet object.
positiveFactor-method | Acessor functions for the 'positiveFactor' slot in a NanoStringSet object.
positiveFactor<- | Acessor functions for the 'positiveFactor' slot in a NanoStringSet object.
positiveFactor<--method | Acessor functions for the 'positiveFactor' slot in a NanoStringSet object.