"Title","Description","BiocVersion","Genome","SourceType","SourceUrl","SourceVersion","Species","TaxonomyId","Coordinate_1_based","DataProvider","Maintainer","RDataClass","DispatchClass","Location_Prefix","RDataPath","PublicationDate","NumberAssays","PreprocessingSoftware","LabelingProtocol","PsmsAvailable","PeptidesAvailable","ProteinsAvailable","ContainsSingleCells","Notes"
"specht2019v2","SCP expression data for monocytes (U-937) and macrophages at PSM, peptide and protein level","3.15",NA,"CSV","https://drive.google.com/drive/folders/1Zhjik_JFjCQNIVjg63-fooJ4K0HZxWjV",NA,"Homo sapiens",9606,TRUE,"GoogleDrive","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/specht2019v2.Rda",2019-12-05,179,"MaxQuant,DART-ID","TMT-11,TMT-16",TRUE,TRUE,TRUE,TRUE,NA
"specht2019v3","SCP expression data for more monocytes (U-937) and macrophages at PSM, peptide and protein level","3.15",NA,"CSV","https://drive.google.com/drive/folders/1Zhjik_JFjCQNIVjg63-fooJ4K0HZxWjV",NA,"Homo sapiens",9606,TRUE,"GoogleDrive","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/specht2019v3.Rda",2020-10-04,179,"MaxQuant,DART-ID","TMT-11,TMT-16",TRUE,TRUE,TRUE,TRUE,NA
"dou2019_lysates","SCP expression data for Hela digests (0.2 or 10 ng) at PSM and protein level","3.14",NA,"XLS/XLSX","ftp://massive.ucsd.edu/MSV000084110/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/dou2019_lysates.Rda",2019-10-15,4,"MS-GF+,MASIC","TMT-10",TRUE,TRUE,TRUE,FALSE,NA
"dou2019_mouse","SCP expression data for C10, SVEC or Raw cells at PSM and protein level","3.14",NA,"XLS/XLSX","ftp://massive.ucsd.edu/MSV000084110/",NA,"Mus musculus",10090,TRUE,"MassIVE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/dou2019_mouse.Rda",2019-10-15,14,"MS-GF+,MASIC","TMT-10",TRUE,TRUE,TRUE,TRUE,NA
"dou2019_boosting","SCP expression data for C10, SVEC or Raw cells and 3 boosters (0, 5 or 50 ng) at PSM and protein level","3.14",NA,"XLS/XLSX","ftp://massive.ucsd.edu/MSV000084110/",NA,"Mus musculus",10090,TRUE,"MassIVE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/dou2019_boosting.Rda",2019-10-15,8,"MS-GF+,MASIC","TMT-10",TRUE,TRUE,TRUE,TRUE,NA
"zhu2018MCP","Near SCP expression data for micro-dissected rat brain samples (50, 100, or 200 um width) at PSM level","3.15",NA,"TXT","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/07/PXD008844",NA,"Rattus norvegicus",10116,TRUE,"PRIDE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/zhu2018MCP.Rda",2018-09-01,4,"MaxQuant","LFQ",FALSE,TRUE,TRUE,FALSE,NA
"zhu2018NC_hela","Near SCP expression data for HeLa samples (aproximately 12, 40, or 140 cells) at PSM level","3.13",NA,"TXT","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/01/PXD006847",NA,"Homo sapiens",9606,TRUE,"PRIDE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/zhu2018NC_hela.Rda",2018-02-28,4,"MaxQuant","LFQ",FALSE,TRUE,TRUE,FALSE,NA
"zhu2018NC_lysates","Near SCP expression data for HeLa lysates (10, 40 and 140 cell equivalent) at PSM level","3.13",NA,"TXT","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/01/PXD006847",NA,"Homo sapiens",9606,TRUE,"PRIDE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/zhu2018NC_lysates.Rda",2018-02-28,4,"MaxQuant","LFQ",FALSE,TRUE,TRUE,FALSE,NA
"zhu2018NC_islets","Near SCP expression data for micro-dissected human pancreas samples (control patients or type 1 diabetes) at PSM level","3.13",NA,"TXT","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/01/PXD006847",NA,"Homo sapiens",9606,TRUE,"PRIDE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/zhu2018NC_islets.Rda",2018-02-28,4,"MaxQuant","LFQ",FALSE,TRUE,TRUE,FALSE,NA
"cong2020AC","SCP expression data for Hela cells at PSM, peptide and protein level","3.13",NA,"TXT","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/02/PXD016921",NA,"Homo sapiens",9606,TRUE,"PRIDE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/cong2020AC.Rda",2020-01-02,9,"MaxQuant","LFQ",TRUE,TRUE,TRUE,TRUE,NA
"zhu2019EL","SCP expression data for chicken utricle samples (1, 3, 5 or 20 cells) at PSM, peptide and protein level","3.15",NA,"TXT","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD014256",NA,"Gallus gallus",9031,TRUE,"PRIDE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/zhu2019EL.Rda",2019-11-04,63,"MaxQuant","LFQ",TRUE,TRUE,TRUE,TRUE,NA
"liang2020_hela","Expression data for HeLa cells (0, 1, 10, 150, 500 cells) at PSM, peptide and protein level","3.13",NA,"TXT","ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/12/PXD021882/",NA,"Homo sapiens",9606,TRUE,"PRIDE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/liang2020_hela.Rda",2020-12-22,17,"MaxQuant","LFQ",TRUE,TRUE,TRUE,TRUE,NA
"schoof2021","Single-cell proteomics data from OCI-AML8227 cell culture to reconstruct the cellular hierarchy.","3.14",NA,"TXT","http://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD020586/",NA,"Homo sapiens",9606,TRUE,"PRIDE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/schoof2021.Rda",2021-06-07,194,"ProteomeDiscoverer","TMT-16",TRUE,FALSE,TRUE,TRUE,NA
"williams2020_lfq","Single-cell label free proteomics data from a MCF10A cell line culture.","3.15",NA,"TXT","ftp://massive.ucsd.edu/MSV000085230/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/williams2020_lfq.Rda",2020-08-04,9,"MaxQuant","LFQ",FALSE,TRUE,TRUE,TRUE,NA
"williams2020_tmt","Single-cell proteomics data from three acute myeloid leukemia cell line culture (MOLM-14, K562, CMK).","3.15",NA,"TXT","ftp://massive.ucsd.edu/MSV000085230/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/williams2020_tmt.Rda",2020-08-04,4,"MaxQuant","TMT-11",FALSE,TRUE,TRUE,TRUE,NA
"derks2022","Single-cell and bulk (100-cell) proteomics data of PDAC, melanoma cells and monocytes.","3.16",NA,"TXT","ftp://massive.ucsd.edu/MSV000089093/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/derks2022.Rda",2022-07-14,66,"DIA-NN","mTRAQ",TRUE,FALSE,TRUE,TRUE,NA
"brunner2022","Single-cell proteomics data of cell cycle stages in HeLa.","3.16",NA,"TXT","https://www.ebi.ac.uk/pride/archive/projects/PXD024043",NA,"Homo sapiens",9606,TRUE,"PRIDE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/brunner2022.Rda",2022-02-08,435,"DIA-NN","LFQ",TRUE,FALSE,TRUE,TRUE,NA
"leduc2022_pSCoPE","Single-cell proteomics data of 878 melanoma cells and 877 monocytes (pSCoPE).","3.19",NA,"TXT","ftp://massive.ucsd.edu/MSV000089159/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/leduc2022_pSCoPE.Rda",2022-03-30,138,"MaxQuant","TMT-18",TRUE,TRUE,TRUE,TRUE,NA
"leduc2022_plexDIA","Single-cell proteomics data of 126 melanoma cells (plexDIA).","3.18",NA,"TXT","ftp://massive.ucsd.edu/MSV000089159/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/leduc2022_plexDIA.Rda",2022-12-06,48,"DIA-NN","mTRAQ-3",TRUE,TRUE,TRUE,TRUE,NA
"woo2022_macrophage","Single-cell proteomics data from LPS-treated macrophages.","3.18",NA,"TXT","ftp://massive.ucsd.edu/MSV000085937/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/woo2022_macrophage.Rda",2022-05-18,5,"MaxQuant","LFQ",FALSE,TRUE,TRUE,TRUE,NA
"woo2022_lung","Single-cell proteomics data from primary human lung cells.","3.18",NA,"TXT","ftp://massive.ucsd.edu/MSV000085937/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/woo2022_lung.Rda",2022-05-18,5,"MaxQuant","LFQ",FALSE,TRUE,TRUE,TRUE,NA
"gregoire2023_mixCTRL","Single-cell proteomics data from two monocyte cell lines","3.19",NA,"TXT","https://www.ebi.ac.uk/pride/archive/projects/PXD046211",NA,"Homo sapiens",9606,TRUE,"PRIDE","Samuel Gregoire <samuel.gregoire@uclouvain.be>","QFeatures","Rda","","scpdata/gregoire2023_mixCTRL.Rda",2024-01-22,119,"Sage","TMT-16",TRUE,TRUE,TRUE,TRUE,NA
"khan2023","Single-cell proteomics data of 421 MCF-10A cells undergoing EMT triggered by TGFβ","3.19",NA,"TXT","https://drive.google.com/drive/folders/1zCsRKWNQuAz5msxx0DfjDrIe6pUjqQmj",NA,"Homo sapiens",9606,TRUE,"MassIVE","Enes Sefa Ayar <enes.ayar@uclouvain.be>","QFeatures","Rda","","scpdata/khan2023.Rda",2023-12-21,47,"MaxQuant","TMTPro 16plex",TRUE,TRUE,TRUE,TRUE,NA
"guise2024","Single-cell proteomics data of 108 postmortem CTL or ALS spinal moto neurons","3.19",NA,"TXT","ftp://massive.ucsd.edu/v05/MSV000092119/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Christophe Vanderaa <christophe.vanderaa@uclouvain.be>","QFeatures","Rda","","scpdata/guise2024.rda",2024-01-05,47,"Proteome Discoverer","LFQ",TRUE,TRUE,TRUE,TRUE,NA
"petrosius2023_mES","Mouse embryonic stem cells across ground-state (m2i) and differentiation-permissive (m15) culture conditions.","3.19",NA,"TXT","https://dataverse.uclouvain.be/dataset.xhtml?persistentId=doi:10.14428/DVN/EMAVLT",NA,"Homo sapiens",9606,TRUE,"Dataverse","Enes Sefa Ayar <enes.ayar@uclouvain.be>","QFeatures","Rda","","scpdata/petrosius2023_mES.Rda",2024-04-09,605,"Spectronaut","LFQ",TRUE,TRUE,TRUE,TRUE,NA
"petrosius2023_AstralAML","Single-cell proteomics data of 4 cell types from the OCI-AML8227 model.","3.19",NA,"TXT","https://dataverse.uclouvain.be/dataset.xhtml?persistentId=doi:10.14428/DVN/4DSPJM",NA,"Homo sapiens",9606,TRUE,"Dataverse","Samuel Gregoire <samuel.gregoire@uclouvain.be>","QFeatures","Rda","","scpdata/petrosius2023_AstralAML.Rda",2023-06-08,217,"Spectronaut","LFQ",TRUE,TRUE,TRUE,TRUE,NA
"krull2024","Single-cell proteomics data IFN-γ response of U-2 OS cells","3.19",NA,"TXT","https://www.ebi.ac.uk/pride/archive/projects/PXD053464",NA,"Homo sapiens",9606,TRUE,"PRIDE","Enes Sefa Ayar <enes.ayar@uclouvain.be>","QFeatures","Rda","","scpdata/krull2024.Rda",2024-10-24,159,"DIA-NN","LFQ",TRUE,FALSE,TRUE,TRUE,NA
"hu2023_K562","Single-cell proteomics data of K562 cells","3.19",NA,"TXT","ftp://massive.ucsd.edu/MSV000089625/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Enes Sefa Ayar <enes.ayar@uclouvain.be>","SingleCellExperiment","Rda","","scpdata/hu2023_K562.Rda",2024-10-24,1,"Proteome Discoverer","LFQ",FALSE,FALSE,TRUE,TRUE,NA
"hu2023_oocyte","Single-cell proteomics data of oocytes","3.19",NA,"TXT","ftp://massive.ucsd.edu/MSV000089625/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Enes Sefa Ayar <enes.ayar@uclouvain.be>","SingleCellExperiment","Rda","","scpdata/hu2023_oocyte.Rda",2024-10-24,1,"Proteome Discoverer","LFQ",FALSE,FALSE,TRUE,TRUE,NA
"ai2025a","Single-cell proteomics data of adult cardiomyocytes from Ai et al. (2025)","3.21",NA,"TXT","ftp://massive.ucsd.edu/v07/MSV000094438/updates/2024-10-23_bineka_5deafa61/other/Supplementary%20Files/aCMs/report.tsv",NA,"Homo sapiens",9606,TRUE,"MassIVE","Laurent Gatto <laurent.gatto@uclouvain.be>","QFeatures","Rda","","scpdata/ai2025a.rda",2025-02-22,304,"DIA-NN","LFQ",TRUE,TRUE,TRUE,TRUE,"DIA-NN output retrieved using MsDataHub::Ai2025_aCMs_report.tsv()"
"leduc2025","Principles of protein abundance regulation across single cells in a mammalian tissue Leduc et al, (2025)","3.23",NA,"CSV","https://zenodo.org/records/21904283/files/leduc2025.rda",NA,"Mus musculus",10090,TRUE,"Zenodo","Enes Sefa Ayar <enes.ayar@uclouvain.be>","QFeatures","Rda","https://zenodo.org/","records/21904283/files/leduc2025.rda",2026-08-12,11,"DIA-NN","mTRAQ",FALSE,TRUE,TRUE,TRUE,NA
