Package: curatedOvarianData
Type: Package
Title: Clinically Annotated Data for the Ovarian Cancer Transcriptome
Version: 1.51.5
Date: 2026-10-03
Authors@R: c(
    person("Benjamin", "Ganzfried", role = "aut"),
    person("Markus", "Riester", role = "aut"),
    person("Steve", "Skates", role = "aut"),
    person("Victoria", "Wang", role = "aut"),
    person("Thomas", "Risch", role = "aut"),
    person("Benjamin", "Haibe-Kains", role = "aut"),
    person("Svitlana", "Tyekucheva", role = "aut"),
    person("Jie", "Ding", role = "aut"),
    person("Ina", "Jazic", role = "aut"),
    person("Michael", "Birrer", role = "aut"),
    person("Giovanni", "Parmigiani", role = "aut"),
    person("Curtis", "Huttenhower", role = "aut"),
    person("Levi", "Waldron", , "lwaldron.research@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-2725-0694")),
    person("NCI", role = "fnd",
           comment = c(GrantNo. = "U24CA289073"))
  )
Description: Manually curated human ovarian cancer ExpressionSet objects
    from 30 studies, with uniformly processed expression data and
    standardized clinical metadata including survival outcomes. Datasets
    are hosted on Zenodo and downloaded on first use, then cached locally
    with BiocFileCache. Includes a configurable script for rule-based
    creation of filtered dataset lists for meta-analysis.
Depends: Biobase, R (>= 4.6.0)
Imports: BiocFileCache, tools, utils
Suggests: BiocStyle, futile.logger, genefilter, knitr, logging,
        metafor, rmarkdown, testthat (>= 3.0.0), survival, sva, xtable
License: Artistic-2.0
VignetteBuilder: knitr
URL: https://github.com/waldronlab/curatedOvarianData
BugReports: https://github.com/waldronlab/curatedOvarianData/issues
biocViews: ExperimentData, ExpressionData, CancerData,
        OvarianCancerData, MicroarrayData, miRNAData, RNASeqData,
        ArrayExpress, GEO
BuildResaveData: no
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/curatedOvarianData
git_branch: devel
git_last_commit: 9fe9192
git_last_commit_date: 2026-10-06
Repository: Bioconductor 3.24
Date/Publication: 2026-10-08
NeedsCompilation: no
Packaged: 2026-10-08 15:10:44 UTC; biocbuild
Author: Benjamin Ganzfried [aut],
  Markus Riester [aut],
  Steve Skates [aut],
  Victoria Wang [aut],
  Thomas Risch [aut],
  Benjamin Haibe-Kains [aut],
  Svitlana Tyekucheva [aut],
  Jie Ding [aut],
  Ina Jazic [aut],
  Michael Birrer [aut],
  Giovanni Parmigiani [aut],
  Curtis Huttenhower [aut],
  Levi Waldron [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2725-0694>),
  NCI [fnd] (GrantNo.: U24CA289073)
Maintainer: Levi Waldron <lwaldron.research@gmail.com>
