Package: SpaMTPData
Type: Package
Title: Experiment Data Resources for SpaMTP Workflows
Version: 0.99.5
Date: 2026-09-13
Authors@R: c(
    person("Tianyao", "Lu",
           email = "lu.t@wehi.edu.au",
           role = c("aut", "cre")),
    person("Andrew", "Causer", role = "aut"),
    person("Quan", "Nguyen", role = "aut")
    )
Description: Provides lightweight, version-aware access to spatial
    metabolomics and multi-omics experiment data used in SpaMTP workflows.
    Resources cover mouse brain, mouse urinary bladder, simulated single-cell
    multi-omics, annotation-refinement, and human brain examples. Large files
    are retrieved through ExperimentHub or verified source-URL caches rather
    than stored in the package repository. A small deterministic synthetic SpatialExperiment
    with a paired transcriptome supports offline examples and interoperability
    tests. Native SpatialExperiment datasets are available in a separate
    resource release; historical archival objects retain their original
    representations. Conversion and analysis are handled by the SpaMTP
    software package. Native experimental files share a Zenodo version family
    with SpaMTPdb without coupling the packages at runtime.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.6.0)
Imports: AnnotationHub, ExperimentHub, S4Vectors, SingleCellExperiment,
        SpatialExperiment, utils
Suggests: BiocStyle, ExperimentHubData, jsonlite, knitr, rmarkdown,
        SummarizedExperiment, testthat (>= 3.0.0)
biocViews: ExperimentData, ExperimentHub, Homo_sapiens_Data,
        Mus_musculus_Data, ReproducibleResearch
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 3
URL: https://github.com/BCRL-tylu/SpaMTPData
BugReports: https://github.com/BCRL-tylu/SpaMTPData/issues
Config/roxygen2/version: 8.1.0
git_url: https://git.bioconductor.org/packages/SpaMTPData
git_branch: devel
git_last_commit: fbe70ba
git_last_commit_date: 2026-09-13
Repository: Bioconductor 3.24
Date/Publication: 2026-09-29
NeedsCompilation: no
Packaged: 2026-09-29 15:41:31 UTC; biocbuild
Author: Tianyao Lu [aut, cre],
  Andrew Causer [aut],
  Quan Nguyen [aut]
Maintainer: Tianyao Lu <lu.t@wehi.edu.au>
