pepDat
This is the development version of pepDat; for the stable release version, see pepDat.
Peptide microarray data package
Bioconductor version: Development (3.24)
Provides sample files and data for the vignettes of pepStat and Pviz as well as peptide collections for HIV and SIV.
Author: Renan Sauteraud, Raphael Gottardo
Maintainer: Renan Sauteraud <rsautera at fhcrc.org>
citation("pepDat")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("pepDat")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pepDat")| The pepDat users guide | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, MicroarrayData |
| Version | 1.33.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0) |
| Imports | GenomicRanges |
| System Requirements | |
| URL |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | pepStat, Pviz |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pepDat_1.33.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/pepDat |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pepDat |
| Package Short Url | https://bioconductor.org/packages/pepDat/ |
| Package Downloads Report | Download Stats |