mCSEAdata

This is the development version of mCSEAdata; for the stable release version, see mCSEAdata.

Data package for mCSEA package

Bioconductor version: Development (3.24)

Data objects necessary to some mCSEA package functions. There are also example data objects to illustrate mCSEA package functionality.

Author: Jordi Martorell Marugán

Maintainer: Jordi Martorell Marugán <jmartorellm at gmail.com>

Citation (from within R, enter citation("mCSEAdata")):

Seminal Bioconductor project articles:

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.

Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("mCSEAdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mCSEAdata")

Data for mCSEA package	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version	1.33.0
License	GPL-2
Depends	R (>= 3.5)
Imports	GenomicRanges
System Requirements
URL

Suggests	BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me	mCSEA
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mCSEAdata_1.33.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/mCSEAdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mCSEAdata
Package Short Url	https://bioconductor.org/packages/mCSEAdata/
Package Downloads Report	Download Stats