golubEsets
This is the development version of golubEsets; for the stable release version, see golubEsets.
exprSets for golub leukemia data
Bioconductor version: Development (3.24)
representation of public golub data with some covariate data of provenance unknown to the maintainer at present; now employs ExpressionSet format
Author: Todd Golub <golub at wi.mit.edu>
Maintainer: Vince Carey <stvjc at channing.harvard.edu>
citation("golubEsets")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("golubEsets")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, Genome, LeukemiaCancerData |
| Version | 1.55.0 |
| License | LGPL |
| Depends | R (>= 2.14.0), Biobase(>= 2.5.5) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | adSplit, Biobase, GlobalAncova, globaltest, idiogram, MLInterfaces, pvca, RDRToolbox, twilight |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | golubEsets_1.55.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/golubEsets |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/golubEsets |
| Package Short Url | https://bioconductor.org/packages/golubEsets/ |
| Package Downloads Report | Download Stats |