VectraPolarisData
This is the development version of VectraPolarisData; for the stable release version, see VectraPolarisData.
Vectra Polaris and Vectra 3 multiplex single-cell imaging data
Bioconductor version: Development (3.24)
Provides two multiplex imaging datasets collected on Vectra instruments at the University of Colorado Anschutz Medical Campus. Data are provided as a Spatial Experiment objects. Data is provided in tabular form and has been segmented and phenotyped using Inform software. Raw .tiff files are not included.
Author: Wrobel Julia [aut, cre]
, Tusharkanti Ghosh [aut]
Maintainer: Wrobel Julia <julia.wrobel at cuanschutz.edu>
citation("VectraPolarisData")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("VectraPolarisData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("VectraPolarisData")| VectraPolarisData | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, Homo_sapiens_Data, ReproducibleResearch, SingleCellData, SpatialData |
| Version | 1.17.0 |
| License | Artistic-2.0 |
| Depends | ExperimentHub, SpatialExperiment, utils |
| Imports | |
| System Requirements | |
| URL | https://github.com/julia-wrobel/VectraPolarisData |
| Bug Reports | https://support.bioconductor.org/t/VectraPolarisData |
See More
| Suggests | BiocStyle, knitr, rmarkdown, dplyr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | VectraPolarisData_1.17.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/VectraPolarisData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/VectraPolarisData |
| Package Short Url | https://bioconductor.org/packages/VectraPolarisData/ |
| Package Downloads Report | Download Stats |