ObMiTi
This is the development version of ObMiTi; for the stable release version, see ObMiTi.
Ob/ob Mice Data on Normal and High Fat Diet
Bioconductor version: Development (3.24)
The package provide RNA-seq count for 2 strains of mus musclus; Wild type and Ob/Ob. Each strain was divided into two groups, and each group received either chow diet or high fat diet. RNA expression was measured after 20 weeks in 7 tissues.
Author: Omar Elashkar [aut, cre]
, Mahmoud Ahmed [aut]
Maintainer: Omar Elashkar <omar.i.elashkar at gmail.com>
citation("ObMiTi")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("ObMiTi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ObMiTi")| Using ObMiTi | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, GEO, RNASeqData |
| Version | 1.21.0 |
| License | GPL-3 |
| Depends | R (>= 4.1), SummarizedExperiment, ExperimentHub |
| Imports | |
| System Requirements | |
| URL | https://github.com/OmarElAshkar/ObMiTi |
| Bug Reports | https://github.com/OmarElAshkar/ObMiTi/issues |
See More
| Suggests | knitr, rmarkdown, BiocManager, GenomicFeatures, S4Vectors, devtools, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ObMiTi_1.21.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ObMiTi |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ObMiTi |
| Package Short Url | https://bioconductor.org/packages/ObMiTi/ |
| Package Downloads Report | Download Stats |