Illumina450ProbeVariants.db
This is the development version of Illumina450ProbeVariants.db; for the stable release version, see Illumina450ProbeVariants.db.
Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes
Bioconductor version: Development (3.24)
Includes details on variants for each probe on the 450k bead chip for each of the four populations (Asian, American, African and European)
Author: Lee Butcher
Maintainer: Tiffany Morris <tiffany.morris at ucl.ac.uk>
citation("Illumina450ProbeVariants.db")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("Illumina450ProbeVariants.db")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CancerData, ChipOnChipData, ExperimentData, Homo_sapiens_Data, SNPData |
| Version | 1.49.0 |
| License | GPL-3 |
| Depends | R (>= 3.0.1) |
| Imports | |
| System Requirements | |
| URL |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Illumina450ProbeVariants.db_1.49.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/Illumina450ProbeVariants.db |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Illumina450ProbeVariants.db |
| Package Short Url | https://bioconductor.org/packages/Illumina450ProbeVariants.db/ |
| Package Downloads Report | Download Stats |