GSE280465
This is the development version of GSE280465; to use it, please install the devel version of Bioconductor.
GSE280465 EPICv2 Methylation ExperimentHub Data
Bioconductor version: Development (3.24)
Provides ExperimentHub access to a processed DNA methylation resource derived from GEO accession GSE280465. The resource contains adult Illumina Infinium MethylationEPIC version 2 data from 163 samples across four tissue types, represented as a RangedSummarizedExperiment with beta, M, and CN assays, hg38 genomic ranges, and sample phenotype metadata.
Author: Paul Ruiz Pinto [aut, cre]
Maintainer: Paul Ruiz Pinto <ruizpint at qut.edu.au>
citation("GSE280465")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("GSE280465")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSE280465")| GSE280465 EPICv2 methylation data | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, ExperimentHub, GEO, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, Tissue |
| Version | 0.99.0 |
| License | Artistic-2.0 |
| Depends | R (>= 4.4.0) |
| Imports | ExperimentHub, utils |
| System Requirements | |
| URL | https://github.com/paulYRP/GSE280465 |
| Bug Reports | https://github.com/paulYRP/GSE280465/issues |
See More
| Suggests | BiocStyle, ExperimentHubData, knitr, rmarkdown, SummarizedExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GSE280465_0.99.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/GSE280465 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSE280465 |
| Package Short Url | https://bioconductor.org/packages/GSE280465/ |
| Package Downloads Report | Download Stats |