Package: TxDb.Osativa.MSU.RGAP7
Title: Transcripts Annotation Database for Rice
Version: 0.99.9
Authors@R: 
    c(
      person("Dwijesh Chandra", "Mishra",
             role="aut",
             email="dwij.mishra@gmail.com",
             comment=c(ORCID="0000-0002-3327-6156")),
      person("Kabilan", "S",
             role=c("aut","cre"),
             email="kabilan151414@gmail.com",
             comment=c(ORCID="0009-0002-9422-0938")),
      person("ICAR-IARI",
             role="fnd",
             email="info@iari.res.in")
    )
Description: 
    Provides transcript, exon, and CDS annotations for Oryza sativa
    (rice) as a Bioconductor TxDb object, generated from the Rice
    Genome Annotation Project (RGAP) Release 7 / MSU7 GFF3 file
    (genome assembly IRGSP-1.0). The TxDb object is distributed
    through AnnotationHub and is retrieved with AnnotationHub(); once
    loaded it can be queried with standard GenomicFeatures accessors
    such as genes(), transcripts(), exonsBy(), and cdsBy() to obtain
    gene models keyed by MSU locus identifiers. The package also
    provides msu_to_rap() for translating MSU locus identifiers into
    RAP-DB identifiers.
Depends: R (>= 4.6.0)
Imports: stats, GenomicFeatures, GenomicRanges, AnnotationHub
Suggests: BiocManager, BiocStyle, knitr, riceidconverter, rmarkdown,
        testthat (>= 3.0.0)
VignetteBuilder: knitr
License: Artistic-2.0
Encoding: UTF-8
URL: https://github.com/kabilanbio/TxDb.Osativa.MSU.RGAP7
BugReports: https://github.com/kabilanbio/TxDb.Osativa.MSU.RGAP7/issues
biocViews: AnnotationData, TxDb, Oryza_sativa, SequenceAnnotation,
        AnnotationHub
Config/testthat/edition: 3
Config/roxygen2/version: 8.1.0
git_url: https://git.bioconductor.org/packages/TxDb.Osativa.MSU.RGAP7
git_branch: devel
git_last_commit: 41e4aeb
git_last_commit_date: 2026-09-04
Repository: Bioconductor 3.24
Date/Publication: 2026-09-30
NeedsCompilation: no
Packaged: 2026-09-30 09:59:00 UTC; biocbuild
Author: Dwijesh Chandra Mishra [aut] (ORCID:
    <https://orcid.org/0000-0002-3327-6156>),
  Kabilan S [aut, cre] (ORCID: <https://orcid.org/0009-0002-9422-0938>),
  ICAR-IARI [fnd]
Maintainer: Kabilan S <kabilan151414@gmail.com>
