EPICv2manifest
This is the development version of EPICv2manifest; for the stable release version, see EPICv2manifest.
Illumina Infinium MethylationEPIC v2.0 extended manifest from Peters et al. 2024
Bioconductor version: Development (3.24)
A data.frame containing an extended probe manifest for the Illumina Infinium Methylation v2.0 Kit. Contains the complete manifest from the Illumina-provided EPIC-8v2-0_EA.csv, plus additional probewise information described in Peters et al. (2024).
Author: Tim Peters [aut, cre], Ruth Pidsley [ctb]
Maintainer: Tim Peters <t.peters at garvan.org.au>
citation("EPICv2manifest")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("EPICv2manifest")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EPICv2manifest")| The EPICv2manifest package user's guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AnnotationData, AnnotationHub, Homo_sapiens, IlluminaChip, probe |
| Version | 0.99.7 |
| License | Artistic-2.0 |
| Depends | R (>= 4.3.0) |
| Imports | AnnotationHub |
| System Requirements | |
| URL | |
| Bug Reports | https://support.bioconductor.org/t/EPICv2manifest |
See More
| Suggests | AnnotationHubData, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | DMRcate |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | EPICv2manifest_0.99.7.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/EPICv2manifest/ |
| Package Downloads Report | Download Stats |