## ----setup, include=FALSE-----------------------------------------------------
options(width=80)
knitr::opts_chunk$set(collapse=TRUE,
                      message=FALSE,
                      warning=FALSE,
                      comment="",
                      fig.align="center",
                      fig.wide=TRUE)

## ----eval=FALSE---------------------------------------------------------------
# gsvapar <- gsvaParam(sce, gsets)

## ----eval=FALSE---------------------------------------------------------------
# gsvabtpar <- gsvaBatchtoolsSlurmParam(partition="short", nodes=10,
#                                       ncpus_per_task=4)

## ----eval=FALSE---------------------------------------------------------------
# gsvamaprnorm <- gsvaMap(gsvaRowNorm, gsvapar, BTPARAM=gsvabtpar)

## ----eval=FALSE---------------------------------------------------------------
# gsvarnorm <- gsvaReduce(gsvamaprnorm)

## ----eval=FALSE---------------------------------------------------------------
# gsvaranks <- gsvaReduce(gsvaMap(gsvaColRanks, gsvarnorm, BTPARAM=gsvabtpar))
# gsvaes <- gsvaReduce(gsvaMap(gsvaColScores, gsvaranks, BTPARAM=gsvabtpar))

## ----eval=FALSE---------------------------------------------------------------
# gsvamapranks <- gsvaMap(gsvaColRanks, gsvarnorm, BTPARAM=gsvabtpar)
# gsvaes <- gsvaReduce(gsvaMap(gsvaColScores, gsvamapranks, BTPARAM=gsvabtpar))

## ----eval=FALSE---------------------------------------------------------------
# srun --mpi=none --mem=10G --nodes=1 --ntasks-per-node=1 --partition=short --pty bash -i

## ----session_info, cache=FALSE------------------------------------------------
sessionInfo()