citHeader(
    "To cite systemPipeR in publications, please use the first reference",
    "below, which describes the current systemPipeR workflow management",
    "system. The second reference is the original systemPipeR publication."
)

bibentry(
    bibtype = "Article",
    title = paste(
        "systemPipeR: a multipurpose workflow management system",
        "for reproducible data analysis"
    ),
    author = c(
        person("Le", "Zhang"),
        person("Daniela", "Cassol"),
        person("Brendan", "Gongol"),
        person("Thomas", "Girke")
    ),
    journal = "NAR Genomics and Bioinformatics",
    year = "2026",
    volume = "8",
    number = "2",
    pages = "lqag032",
    doi = "10.1093/nargab/lqag032",
    url = "https://doi.org/10.1093/nargab/lqag032"
)

bibentry(
    bibtype = "Article",
    title = "systemPipeR: NGS workflow and report generation environment",
    author = c(
        person(c("Tyler", "W.", "H."), "Backman"),
        person("Thomas", "Girke")
    ),
    journal = "BMC Bioinformatics",
    year = "2016",
    volume = "17",
    number = "1",
    pages = "388",
    doi = "10.1186/s12859-016-1241-0",
    url = "https://doi.org/10.1186/s12859-016-1241-0"
)
