# Generated by roxygen2: do not edit by hand

export(ADOSign)
export(APMSign)
export(ASCSign)
export(CD39CD8TcellSign)
export(CINSign)
export(CISSign)
export(COXISSign)
export(CombinedSign)
export(DNArepSign)
export(ECMSign)
export(EMTSign)
export(HRDSSign)
export(ICBResponseSign)
export(IFNSign)
export(IPRESSign)
export(IPSOVSign)
export(IPSSign)
export(IRGSign)
export(ISCSign)
export(LRRC15CAFSign)
export(MITFlowPTENnegSign)
export(MPSSign)
export(PassONSign)
export(SCSubtypeSign)
export(TGFBSign)
export(TLSSign)
export(TinflamSign)
export(VEGFSign)
export(autophagySign)
export(availableSignatures)
export(cellCycleSign)
export(chemokineSign)
export(consensusOVSign)
export(correlationSignPlot)
export(evaluationSignPlot)
export(expandedImmuneSign)
export(ferroptosisSign)
export(geneHeatmapSignPlot)
export(getSignGenes)
export(glycolysisSign)
export(heatmapSignPlot)
export(hypoxiaSign)
export(immuneCytSign)
export(immunoScoreSign)
export(interferonSign)
export(lipidMetabolismSign)
export(matrisomeSign)
export(metalSign)
export(mitoticIndexSign)
export(multipleSign)
export(oneSignPlot)
export(oxphosSign)
export(pyroptosisSign)
export(ridgelineSignPlot)
export(stateSign)
export(stemCellCD49fSign)
export(stressSign)
export(survivalSignPlot)
import(SpatialExperiment)
import(ggplot2)
import(legendry)
import(patchwork)
importFrom(AnnotationDbi,mapIds)
importFrom(BiocGenerics,width)
importFrom(ComplexHeatmap,
  "%v%",
  Heatmap,
  HeatmapAnnotation,
  rowAnnotation
)
importFrom(DGEobj.utils,convertCounts)
importFrom(GSVA,
  gsva,
  gsvaParam,
  ssgseaParam
)
importFrom(IRanges,reduce)
importFrom(RColorBrewer,brewer.pal)
importFrom(SummarizedExperiment,
  "assays<-",
  "colData<-",
  SummarizedExperiment,
  assay,
  assays,
  colData
)
importFrom(TxDb.Hsapiens.UCSC.hg19.knownGene,TxDb.Hsapiens.UCSC.hg19.knownGene)
importFrom(TxDb.Hsapiens.UCSC.hg38.knownGene,TxDb.Hsapiens.UCSC.hg38.knownGene)
importFrom(consensusOV,get.subtypes)
importFrom(cowplot,plot_grid)
importFrom(dplyr,
  group_by,
  summarise_all
)
importFrom(ensembldb,exonsBy)
importFrom(ggplot2,cut_number)
importFrom(ggridges,
  geom_density_ridges,
  geom_density_ridges_gradient
)
importFrom(grid,gpar)
importFrom(magrittr,"%>%")
importFrom(matrixStats,rowMedians)
importFrom(maxstat,maxstat.test)
importFrom(methods,is)
importFrom(openair,corPlot)
importFrom(org.Hs.eg.db,org.Hs.eg.db)
importFrom(scales,rescale)
importFrom(stats,
  cor,
  median,
  prcomp,
  quantile,
  rnorm,
  rpois,
  sd,
  t.test,
  var,
  weighted.mean
)
importFrom(survival,
  Surv,
  survfit
)
importFrom(survminer,ggsurvplot)
importFrom(viridis,
  magma,
  viridis
)
