Package: scMerge
Type: Package
Title: scMerge: Merging multiple batches of scRNA-seq data
Version: 1.29.1
Authors@R: c(
    person("Yingxin", "Lin", email = "yingxin.lin@sydney.edu.au", role = c("aut", "cre")
    ),
    person("Kevin", "Wang", email = "kevin.wang@sydney.edu.au", role = c("aut")
    ),
    person("Sydney Bioinformatics and Biometrics Group", email = "bioinformatics@maths.usyd.edu.au", role = c("fnd"))
    )
Description: Like all gene expression data, single-cell data suffers from 
    batch effects and other unwanted variations that makes accurate biological interpretations difficult. 
    The scMerge method leverages factor analysis, stably expressed genes (SEGs) and (pseudo-) replicates to 
    remove unwanted variations and merge multiple single-cell data. 
    This package contains all the necessary functions in the 
    scMerge pipeline, including the identification of SEGs, replication-identification methods, and 
    merging of single-cell data. 
License: GPL-3
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.6.0)
Imports: BiocGenerics, BiocParallel, BiocSingular, BiocNeighbors,
        cluster, DelayedArray, DelayedMatrixStats, distr, igraph,
        M3Drop, proxyC, ruv, cvTools, scater, batchelor, scran,
        methods, S4Vectors, SingleCellExperiment, SummarizedExperiment
RoxygenNote: 7.2.3
Suggests: BiocStyle, covr, HDF5Array, knitr, Matrix, rmarkdown, scales,
        proxy, testthat, badger
VignetteBuilder: knitr
biocViews: BatchEffect, GeneExpression, Normalization, RNASeq,
        Sequencing, SingleCell, Software, Transcriptomics
URL: https://github.com/SydneyBioX/scMerge
BugReports: https://github.com/SydneyBioX/scMerge/issues
git_url: https://git.bioconductor.org/packages/scMerge
git_branch: devel
git_last_commit: 3ece494
git_last_commit_date: 2026-10-07
Repository: Bioconductor 3.24
Date/Publication: 2026-10-08
NeedsCompilation: no
Packaged: 2026-10-09 00:15:55 UTC; biocbuild
Author: Yingxin Lin [aut, cre],
  Kevin Wang [aut],
  Sydney Bioinformatics and Biometrics Group [fnd]
Maintainer: Yingxin Lin <yingxin.lin@sydney.edu.au>
