fca61e65deb41d2d7c43a2e44c48b2db *DESCRIPTION
d5e60b3f44df9ccc7a16b839738d3e34 *Dockerfile
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
d671979cfd6b64f564a46171a0841886 *NAMESPACE
6b6a234fbd4ad5b80cf02b2f50db2120 *R/atac.R
cee836b5128d909a4867b0b3952fbb8f *R/atac_processing.R
786eba339da792a3993152b0a5d9660a *R/clustering.R
c1946c8cb8d609dbfebd2162c771014a *R/computeDoubletDensity.R
0e82ef545226ae3a2fc914c893abd785 *R/doubletThresholding.R
d76beedac3586b203cb2b29c69d839bf *R/enrichment.R
77f7cab0c590dca4510eb7263c39146e *R/findDoubletClusters.R
e2be291bc3b86d77adfdbd2b045b8558 *R/getArtificialDoublets.R
511da59e5fbf577b76d1667507588658 *R/getFragmentOverlaps.R
e922f0eb5dbcdd09939008ef0dc5f73d *R/identifyDoubletOrigins.R
a2d9472c6d234c71d1480d229f4bbad9 *R/misc.R
0989371041b093dd4e0dbad5a40dc9ad *R/plotting.R
04495ca36113753e3c6b711fa28acd32 *R/recoverDoublets.R
99275fbbdbe6881692124aa1651e4c87 *R/scDblFinder.R
ba3df256f4713fec9dd1eb653fca01ab *R/smoothScores.R
f234d89ca29feb311f79a2c6072fbc5a *README.md
6cdac5852d6e45e9148a9169f7cfdeae *build/vignette.rds
4e3aca4b8d906aeb9f5869800ea7509c *inst/CITATION
6a253ecffad3ce7e26449ccff20d716f *inst/NEWS
11a3f1b2a83b7f53bec50d195ff229ab *inst/doc/computeDoubletDensity.R
9b9c2ca69739ee5c63e4e6054f066817 *inst/doc/computeDoubletDensity.Rmd
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ac7a0174ce2c02a47184d00f044c0f52 *inst/doc/scDblFinder.R
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58dcc208f9e2f6f57ecf950935b6f342 *inst/extdata/example_fragments.tsv.gz
82a42c7e0076ac0844e9a18c06c10cc5 *man/TFIDF.Rd
13392625f503c73a773336c1968bab41 *man/addDoublets.Rd
7b2f78ed854d82dbe57ef63f9d833649 *man/aggregateFeatures.Rd
389295148af92c761bb6a74344693a66 *man/amulet.Rd
3aec3c1b6bacd6df619693ec012277f9 *man/amuletFromCounts.Rd
7d971954654c69ee1adfcbbb328af41c *man/clamulet.Rd
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1a26027f06cb6bad53b6e4ec5c6fcc1c *man/computeDoubletDensity.Rd
e592856d8169821dd921478c716766df *man/createDoublets.Rd
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4e06183743b9d496e4706e27bd33667d *man/directDblClassification.Rd
1e549c3e77366a3b3f65bce04509ce0b *man/doubletPairwiseEnrichment.Rd
b8cd77541cc56b84510965e1ae7f1a89 *man/doubletThresholding.Rd
d3aaf1c916c7339125a446dfbdaf2cd6 *man/fastcluster.Rd
13f2ba5f9ed23f2980494d1bcdca9066 *man/findDoubletClusters.Rd
661b301bbf39dfc72e7bd97170bb78cf *man/getArtificialDoublets.Rd
aabe8a063c6fc20c49429f8b6c3abd01 *man/getCellPairs.Rd
2bc44945d6ff8fc307d3c36d190036f5 *man/getExpectedDoublets.Rd
fc2ab189eae5b88398e69b722e39c90f *man/getFragmentOverlaps.Rd
4c0a2eaa54556a314b2b897bb9cabbd1 *man/identifyDoubletOrigins.Rd
718e35893fc0776d562d243f9bcad3b5 *man/mockDoubletSCE.Rd
a86eb0f8db511861ba7e287413571f55 *man/plotDoubletMap.Rd
c90f888cc63d18970755e96ac747db5f *man/plotThresholds.Rd
df0bb4a5a1bbd11fcbf45b7db2e5b2f5 *man/predictDoubletOrigins.Rd
dac5fdef37c3995647b4485797e9c07d *man/propHomotypic.Rd
2105dded144e80aed9710a0aa9b022b7 *man/recoverDoublets.Rd
74d891469ee20eca3c2e93004fad1397 *man/scDblFinder.Rd
aafb140169bbf55e6ca8fae1d6cc58c1 *man/selFeatures.Rd
5b160ba8f3d12d1e89f004f4c361674a *man/smoothDoubletScores.Rd
fb1a27f87b8b4a8979a688fafc7f206c *tests/testthat.R
63bf4de1b4ee5600b1766c8082199d8a *tests/testthat/test-computeDoubletDensity.R
688d0b4c083f5cad3a47d9cdd97baae4 *tests/testthat/test-doubletOrigins.R
85a147769bcf343a7ec4d233b5961808 *tests/testthat/test-findDoubletClusters.R
baa0b66dc740a059202038a2b6b156bb *tests/testthat/test-recoverDoublets.R
db037e63aaeb0e658f4596a34a6a0a37 *tests/testthat/test-scDblFinder.R
9b9c2ca69739ee5c63e4e6054f066817 *vignettes/computeDoubletDensity.Rmd
cde6aed66dda409416669c4dac04f683 *vignettes/doubletOrigins.Rmd
b85f67546136b6d6a40056a646487216 *vignettes/findDoubletClusters.Rmd
cf273879f2a49c40176ec1e6cebe6126 *vignettes/introduction.Rmd
14b4cc4eff3abcf6faff74313469d7f9 *vignettes/recoverDoublets.Rmd
7716cbd4712b92fa3588fef543c4bb88 *vignettes/scATAC.Rmd
60f8b896cf76f4c46e5c8f04e730831f *vignettes/scDblFinder.Rmd
