# Generated by roxygen2: do not edit by hand

export(CDEResult)
export(compoundDE)
export(deTable)
export(filterGenesBySource)
export(plotDecomposition)
export(plotProportion)
export(plotTCRatio)
export(subtypeDE)
export(subtypeProportions)
export(tcRatio)
exportClasses(CDEResult)
exportMethods(deTable)
exportMethods(show)
exportMethods(subtypeDE)
exportMethods(subtypeProportions)
exportMethods(tcRatio)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(BiocParallel,SerialParam)
importFrom(S4Vectors,DataFrame)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_dodge)
importFrom(ggplot2,position_jitter)
importFrom(ggplot2,position_stack)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,topTable)
importFrom(limma,voom)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,show)
importFrom(rlang,.data)
importFrom(stats,aggregate)
importFrom(stats,model.matrix)
importFrom(stats,reshape)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(utils,head)
