e6ae6fff5ff2530a5417ba766b8775fa *DESCRIPTION
b4abef7813feb21756d8211edd4c153c *LICENSE
e8cb39129b9d5c0ecfd08839a13ab9e2 *NAMESPACE
ce8666b53819fc68c7e11020841e5f5b *NEWS.md
775e5e38865a50b89154797bdb483c2d *R/accessors.R
fc058fd8edc67d8ac17973640f9ede1d *R/alignFeatures.R
8fbdc82cd4784a11063df747aecc7da3 *R/applySNR.R
fa28b7e38f8dfbdb9b2bcc05e015545d *R/back2NA.R
53ef90bcaf41e9a52a9fd7fa256ef903 *R/bindPanels.R
eb8602289ffd10adc82f7dda32e562a2 *R/buildFeatureMeta.R
daa359000262c3559cb4102b75ca8c8d *R/combineMSIs.R
65a455b4c7623ca2489510a81e1b944e *R/contributionHm.R
5daf61f6fee37b95ea3ae2a0121e81b0 *R/createCalCurve.R
002fdeea1629f88687f924ce6f3ab943 *R/createMSIDataMatrix.R
787e4353c4cfc11c459781786802a55b *R/generateTxtImages.R
129d2d785f52f59b97053a6d07d0f1fd *R/imageR.R
fc110493910fa56fb61bcd77ab48f1b5 *R/int2SNR.R
46bc759e75671a5b400b14ef6bedb5f0 *R/int2conc.R
12ea306600af998c90fc304da8257242 *R/int2response.R
46d8c8faeb7f41dcc24c6d783e2c3664 *R/join_ion_library.R
c9ff68023b4889f2425a23c7d376786e *R/palettes.R
38f13e5f38493a2c7b6ebb29e369cb9e *R/plotCalCoverage.R
0ea82b3b87891264520f7635f15aec0c *R/quantMSImageR-package.R
5a96e24e9b784c311d8b0a12bedecef2 *R/quantileHm.R
7ffb0934aa7d5ff86249f9c47ad0d1f2 *R/readMRM.R
22594c6f4743857e04d8a54f02d39e8a *R/removeBlankMzs.R
263219a34a6fb3e9e9cd5ef9889a3c3a *R/runExample.R
e0138855b542e6cb2799efa2a66c4246 *R/runStudy.R
5f87ee0feb5d0ea222a40d0745000aa0 *R/selectTissuePixels.R
f2753dcdc90b41632df542fdce06921d *R/setClasses.R
dfce8da92645e355acfbb8aba6686613 *R/stitchAcquisitions.R
a18252238ba0cbed191529242c8682be *R/summariseCalLevels.R
ae73aeeff8ef5d2305d0904457d79a31 *R/trimMSI.R
fd803e51cdac8ae9eab6484d4fba7c45 *R/validate.R
f2332e16494b326543264975393e2d38 *R/zero2NA.R
8776dd7b00209a2c9b0cdd9023d4a1b8 *README.md
ca680e313c52b87711a3f7f04342c71f *build/vignette.rds
e7a4fb4269cd0dc08701c9e1e5f3730c *inst/config_template.yaml
fdf1e4ab6bcbcc652a5ce5c4a95119a2 *inst/doc/quantMSImageR.R
fbfd80873c5d9a44e89b8f157d77b876 *inst/doc/quantMSImageR.Rmd
59bc593e4fa47ecea1058b403a59f14b *inst/doc/quantMSImageR.html
8e3b10d088e867fdb1ef2c9450f3227e *inst/doc/quantification.R
79bb7e16f6f10ac38f82dce7a6f1755a *inst/doc/quantification.Rmd
a7ed2eb3edb85c05bc098e97ad6d5c3b *inst/doc/quantification.html
ec3ea4e69fa6ed883a277324b5efd5f2 *inst/extdata/cal_example.raw/cal_MSI.RDS
37ab7d6a161e4096acb963a29a942522 *inst/extdata/cal_example.raw/calibration_metadata.csv
fec04e9439eef8c31dc1244c539e4f35 *inst/extdata/example.raw/section01.RDS
b718682430d84a3057251ba8fe3fe3a0 *inst/extdata/example.raw/section02.RDS
4daa6e7281f49e4a12c57b9ec00c2c80 *inst/extdata/example.raw/section03.RDS
f923a28457c9e10dd1028e3777f8c623 *inst/extdata/example.raw/section04.RDS
4ca1acb76804d27121fff0806cfa0f6b *inst/extdata/example.raw/section05.RDS
a12737da4cef6e2acc5dd21974fe18d5 *inst/extdata/example.raw/section06.RDS
1fee15d4c1c53f1b287b1c457b5d14f1 *inst/extdata/example_ion_library.csv
d6ef2c5f7d8f94f47c66ac9bd4559cff *inst/extdata/ion_library_pos04.csv
55cdd4c06dc98ff4401ee3963533c6b1 *inst/extdata/pos04_test.raw/MSImagingExperiment.rds
7d711b9464118a64ec3861625de3b5d2 *inst/extdata/pos04_test.raw/_extern.inf
317ee81b41a19b64283665e4a8e8c1e4 *inst/extdata/pos04_test.raw/tissue_pixels.csv
0ed66e8bad166be4bd5440bfbfebf7f5 *inst/quantMSImageR___general_heatmap.Rmd
5216a7497ec51e5f24fc89e8ce855ed1 *inst/runStudy.R
f24ec4ce2a783f57dd5733d05bc481f7 *inst/scripts/README.md
bf5fac08a28715507bf86d5a543a2c4f *inst/scripts/generate_cal_data.R
8f5bf04e810d7be3b41fba0c2a0f918d *inst/scripts/generate_example_data.R
cc015dfa1c4f96dd250057a58a09cfe5 *man/alignFeatures.Rd
93ceaa5c32c2e1b1bc99847ec1426109 *man/applySNR-quant_MSImagingExperiment-method.Rd
683c635e7c476d9b46e477303bbcb246 *man/back2NA-quant_MSImagingExperiment-method.Rd
72e7568a8a595f98fe4cf814cedad43f *man/bindPanels.Rd
3293830176cef7a46224a4815ce1b514 *man/buildFeatureMeta.Rd
dd0bba4363619c7f50f426f1a094e164 *man/calibrationInfo-class.Rd
10ae8add9ccef174aca7c9c9a37edc05 *man/combineMSIs-MSImagingExperiment-method.Rd
f11fb9af4ca5ce9eb297254e087769ef *man/contributionHm.Rd
05729d40b46321f59593481554553ada *man/createCalCurve-quant_MSImagingExperiment-method.Rd
d7a24a53c8b3b3b84e9b42c3872c9f8e *man/createMSIDataMatrix-quant_MSImagingExperiment-method.Rd
c627f08f7db650675a90c77ce07a2eea *man/figures/logo.png
d915518af605794f15c31c5cc28c76cf *man/generateTxtImages.Rd
4b9bcdca378fc6573083f0a4550351b9 *man/imageR-quant_MSImagingExperiment-method.Rd
ead9c63c9e369a5c234345db16153f18 *man/int2SNR-quant_MSImagingExperiment-method.Rd
1974cf0fc72c8baa3a08f2fbfa838802 *man/int2conc-quant_MSImagingExperiment-method.Rd
65c9d207168d621ac4350594ffbe234e *man/int2response-quant_MSImagingExperiment-method.Rd
881b2f81a3191c6c107afc436e8370bd *man/plotCalCoverage-quant_MSImagingExperiment-method.Rd
d7e80eb605d8f91d1c580089fc28e88e *man/print.quantValidation.Rd
9312c2483b2eb6607a5f471bce8693c9 *man/quantMSImageR-accessors.Rd
ec4bb884cd026380fdc81e5213420958 *man/quantMSImageR-package.Rd
37c81e8cdf6f360d1a8d4b6ea3aa682f *man/quantPalettes.Rd
089f510cd7d1909d23fb401d56310632 *man/quant_MSImagingExperiment.Rd
4bd2b7b7cdcd8ac7f71b51c66e17b4a7 *man/quantileHm.Rd
6eb66b3de26a09fd785e27536a0bfb19 *man/readMRM.Rd
e9936db9a9350cc00e101c4cf02cbb6e *man/removeBlankMzs-quant_MSImagingExperiment-method.Rd
7503c6033a07031553830e04839321f7 *man/runExample.Rd
38fb8f571df07eff066a0d39e128016a *man/runStudy.Rd
54fedd32bbc213a38b1986f285b7cfc5 *man/selectTissuePixels.Rd
48ec0278a374a3591a1a14a9171a3306 *man/stitchAcquisitions.Rd
e741b51d1d0b954f4a873bdfd11a851a *man/summariseCalLevels-quant_MSImagingExperiment-method.Rd
e0c4623068c2d86eceffd1a3e7572856 *man/tissueInfo-class.Rd
a53ebd43f2177e13a89837277364aad1 *man/trimMSI.Rd
dcc7ab6f37d81f06ea4ce8c9a5415415 *man/validateConfig.Rd
fb52079c4bafa22c2009719a5bfa50c2 *man/zero2NA-quant_MSImagingExperiment-method.Rd
e09d2fd82f6c833e79e477d00d63e868 *tests/testthat.R
29c635aa2f31f2ba2c0aec8a4886837e *tests/testthat/test-accessors.R
6efacc8e9d0b6d537bede60d828530d7 *tests/testthat/test-alignFeatures-identity.R
a0af3728e5958a04bfcf986d2b258afb *tests/testthat/test-applySNR.R
c048ed55dc4853dfaf5f3db4853ccb9b *tests/testthat/test-back2NA.R
8f2726c2d08fe336753938e21ceba247 *tests/testthat/test-bindPanels-layers.R
fa47f529800efa35c03eaeafe3efc4ab *tests/testthat/test-cal-weighting.R
2e96ab0e72b4e62ca7c56cfba33891e3 *tests/testthat/test-combineMSIs-validation.R
1453753e5db402cd65956273fc183140 *tests/testthat/test-combineMSIs.R
c24a0338bbc906a6577db3123f968d80 *tests/testthat/test-contributionHm.R
17b878de4eec53d2860c5d51e71e1bed *tests/testthat/test-createCalCurve.R
fefa498147d6b2f02370bfb3a98070c0 *tests/testthat/test-createMSIDataMatrix.R
9d81ff8d71f7f32d677effe9cf7f2e37 *tests/testthat/test-defaults.R
c313bf2700c6be0a25f8f5b2f425f56e *tests/testthat/test-generateTxtImages-output.R
9c8bb39cd955497938ccabddca0a5731 *tests/testthat/test-generateTxtImages.R
31b19d82ea9a575c03651a70b79d2aff *tests/testthat/test-imageR.R
4b658ee891fc2bc54af38831dfa17385 *tests/testthat/test-int2SNR.R
4b3dc9c780c260fddc64147316188ba4 *tests/testthat/test-int2conc.R
295c29550b5aae736f5e47b6c6614d93 *tests/testthat/test-int2response-pipeline.R
109afb2014290d5050bd710555ad0a11 *tests/testthat/test-int2response-standards.R
82295f6fdcd26db6fc65c8255f56f527 *tests/testthat/test-int2response-window.R
bf66a52b8cc593031ca0c8bbab6eb5d4 *tests/testthat/test-int2response.R
38dd5f528dbccdf2c553b5e541ec9376 *tests/testthat/test-palettes.R
8dace2381d601a9f394b797925dc6233 *tests/testthat/test-plotCalCoverage.R
931ba6798c6e61424bc76f789f0159eb *tests/testthat/test-quantileHm.R
55c706ee8e22f31c664bec06ef42c961 *tests/testthat/test-readMRM.R
c43f5ee174448c7bfaf0708129e44f2e *tests/testthat/test-removeBlankMzs.R
db85debb4e0da0966652cf2e18c5276b *tests/testthat/test-stitchAcquisitions.R
11408e24385936362aedb1433bf7e85a *tests/testthat/test-summariseCalLevels-validation.R
dae3f48e66e58c2697ca30dfc6524834 *tests/testthat/test-summariseCalLevels.R
eb5e2ab2ffab7a8edd1a96ff734d8c80 *tests/testthat/test-transition-matching.R
cbda5d8096e5d91b67e080652e52822d *tests/testthat/test-trimMSI.R
9679707179491a72357bde89bcdf6d10 *tests/testthat/test-validate-config.R
24da07d5dfae3024b643c0a942d8f03f *tests/testthat/test-zero2NA-slot.R
8014bb4a72e61565b314ee274bc599a4 *tests/testthat/test-zero2NA.R
fbfd80873c5d9a44e89b8f157d77b876 *vignettes/quantMSImageR.Rmd
79bb7e16f6f10ac38f82dce7a6f1755a *vignettes/quantification.Rmd
